Mutagenetix > Incidental Mutation

Incidental Mutation 'R7493:Gigyf1'

580909

Institutional Source

Beutler Lab

Gene Symbol

Gigyf1

Ensembl Gene

ENSMUSG00000029714

Gene Name

GRB10 interacting GYF protein 1

Synonyms

Perq1

MMRRC Submission

045567-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.470) question?

Stock #

R7493 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

137516810-137526197 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 137523795 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 1019 (M1019K)

Ref Sequence

ENSEMBL: ENSMUSP00000031727 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031726] [ENSMUST00000031727] [ENSMUST00000111020] [ENSMUST00000111023] [ENSMUST00000111027] [ENSMUST00000111038] [ENSMUST00000132525] [ENSMUST00000140139] [ENSMUST00000143495] [ENSMUST00000150063] [ENSMUST00000168746] [ENSMUST00000170293]

AlphaFold

Q99MR1

Predicted Effect

probably benign
Transcript: ENSMUST00000031726

SMART Domains

Protein: ENSMUSP00000031726
Gene: ENSMUSG00000029713

Domain	Start	End	E-Value	Type
low complexity region	3	17	N/A	INTRINSIC
WD40	44	83	1.05e-7	SMART
WD40	86	125	3.96e-3	SMART
WD40	132	170	1.57e-6	SMART
WD40	173	212	2.98e-7	SMART
WD40	215	254	2.1e-7	SMART
WD40	257	298	1.72e-3	SMART
WD40	301	340	2.04e-5	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000031727
AA Change: M1019K

PolyPhen 2 Score 0.984 (Sensitivity: 0.74; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000031727
Gene: ENSMUSG00000029714
AA Change: M1019K

Domain	Start	End	E-Value	Type
low complexity region	17	32	N/A	INTRINSIC
low complexity region	69	87	N/A	INTRINSIC
low complexity region	114	129	N/A	INTRINSIC
low complexity region	253	269	N/A	INTRINSIC
low complexity region	323	352	N/A	INTRINSIC
low complexity region	360	379	N/A	INTRINSIC
coiled coil region	424	450	N/A	INTRINSIC
GYF	477	532	1.6e-25	SMART
low complexity region	534	543	N/A	INTRINSIC
low complexity region	553	576	N/A	INTRINSIC
low complexity region	597	613	N/A	INTRINSIC
coiled coil region	671	735	N/A	INTRINSIC
low complexity region	748	759	N/A	INTRINSIC
low complexity region	826	837	N/A	INTRINSIC
low complexity region	848	877	N/A	INTRINSIC
low complexity region	881	893	N/A	INTRINSIC
coiled coil region	957	984	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111020

SMART Domains

Protein: ENSMUSP00000106649
Gene: ENSMUSG00000029713

Domain	Start	End	E-Value	Type
WD40	1	39	2.65e-4	SMART
WD40	42	81	3.96e-3	SMART
WD40	88	126	1.57e-6	SMART
WD40	129	168	2.98e-7	SMART
WD40	171	210	2.1e-7	SMART
WD40	213	254	1.72e-3	SMART
WD40	257	296	2.04e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000111023

SMART Domains

Protein: ENSMUSP00000106652
Gene: ENSMUSG00000029713

Domain	Start	End	E-Value	Type
WD40	1	39	2.65e-4	SMART
WD40	42	81	3.96e-3	SMART
WD40	88	126	1.57e-6	SMART
WD40	129	168	2.98e-7	SMART
WD40	171	210	2.1e-7	SMART
WD40	213	254	1.72e-3	SMART
WD40	257	296	2.04e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000111027

SMART Domains

Protein: ENSMUSP00000106656
Gene: ENSMUSG00000029713

Domain	Start	End	E-Value	Type
low complexity region	23	41	N/A	INTRINSIC
low complexity region	45	59	N/A	INTRINSIC
WD40	86	125	1.05e-7	SMART
WD40	128	167	3.96e-3	SMART
WD40	174	212	1.57e-6	SMART
WD40	215	254	2.98e-7	SMART
WD40	257	296	2.1e-7	SMART
WD40	299	340	1.72e-3	SMART
WD40	343	382	2.04e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000111038

SMART Domains

Protein: ENSMUSP00000106667
Gene: ENSMUSG00000029711

Domain	Start	End	E-Value	Type
signal peptide	1	23	N/A	INTRINSIC
Pfam:EPO_TPO	30	191	2.8e-69	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000132525

SMART Domains

Protein: ENSMUSP00000119725
Gene: ENSMUSG00000029713

Domain	Start	End	E-Value	Type
low complexity region	3	17	N/A	INTRINSIC
WD40	44	83	1.05e-7	SMART
WD40	86	125	3.96e-3	SMART
WD40	132	170	1.57e-6	SMART
WD40	173	212	2.98e-7	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000140139

SMART Domains

Protein: ENSMUSP00000121942
Gene: ENSMUSG00000029713

Domain	Start	End	E-Value	Type
low complexity region	3	17	N/A	INTRINSIC
WD40	44	83	1.05e-7	SMART
WD40	86	125	3.96e-3	SMART
WD40	132	170	1.57e-6	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000143495

SMART Domains

Protein: ENSMUSP00000126823
Gene: ENSMUSG00000029713

Domain	Start	End	E-Value	Type
Pfam:WD40	1	25	3.8e-3	PFAM
WD40	32	70	1.57e-6	SMART
WD40	73	112	2.98e-7	SMART
WD40	115	154	2.1e-7	SMART
WD40	157	198	1.72e-3	SMART
WD40	201	240	2.04e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000150063

SMART Domains

Protein: ENSMUSP00000129353
Gene: ENSMUSG00000029713

Domain	Start	End	E-Value	Type
low complexity region	3	17	N/A	INTRINSIC
WD40	44	83	1.05e-7	SMART
WD40	86	125	3.96e-3	SMART
WD40	132	170	1.57e-6	SMART
WD40	173	212	2.98e-7	SMART
WD40	215	254	2.1e-7	SMART
WD40	257	298	1.72e-3	SMART
WD40	301	340	2.04e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000168746

SMART Domains

Protein: ENSMUSP00000132908
Gene: ENSMUSG00000029713

Domain	Start	End	E-Value	Type
Pfam:WD40	1	25	3.8e-3	PFAM
WD40	32	70	1.57e-6	SMART
WD40	73	112	2.98e-7	SMART
WD40	115	154	2.1e-7	SMART
WD40	157	198	1.72e-3	SMART
WD40	201	240	2.04e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000170293

SMART Domains

Protein: ENSMUSP00000128038
Gene: ENSMUSG00000029713

Domain	Start	End	E-Value	Type
WD40	1	39	2.65e-4	SMART
WD40	42	81	3.96e-3	SMART
WD40	88	126	1.57e-6	SMART
WD40	129	168	2.98e-7	SMART
WD40	171	210	2.1e-7	SMART
WD40	213	254	1.72e-3	SMART
WD40	257	296	2.04e-5	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

97% (74/76)

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
3425401B19Rik	A	G	14: 32,385,257 (GRCm39)	L236P	possibly damaging	Het
Abca7	T	A	10: 79,837,896 (GRCm39)	D488E	probably damaging	Het
Adora2a	A	G	10: 75,169,423 (GRCm39)	K296E	possibly damaging	Het
Aopep	A	G	13: 63,163,345 (GRCm39)	D122G	probably benign	Het
Atp13a4	T	A	16: 29,290,774 (GRCm39)	E225V		Het
Bpifb2	A	G	2: 153,731,397 (GRCm39)	M258V	possibly damaging	Het
Brd2	G	A	17: 34,341,231 (GRCm39)		probably benign	Het
Btaf1	G	T	19: 36,987,005 (GRCm39)	V1700F	probably damaging	Het
C2cd3	A	G	7: 100,076,433 (GRCm39)	I797V		Het
Ccdc148	T	G	2: 58,899,160 (GRCm39)	E71A	probably damaging	Het
Ccdc18	T	A	5: 108,354,483 (GRCm39)	L1074*	probably null	Het
Ccne2	A	G	4: 11,198,772 (GRCm39)	D215G	probably damaging	Het
Cers6	T	A	2: 68,692,151 (GRCm39)		probably null	Het
Copz1	A	G	15: 103,204,971 (GRCm39)	E110G	probably damaging	Het
Cped1	A	T	6: 22,215,512 (GRCm39)	D682V	probably damaging	Het
Crb1	A	T	1: 139,164,768 (GRCm39)	C1180S	probably damaging	Het
Cyren	A	T	6: 34,851,593 (GRCm39)	L114Q	probably damaging	Het
Echdc3	A	T	2: 6,194,368 (GRCm39)	L229Q	probably damaging	Het
Etfb	C	T	7: 43,104,000 (GRCm39)	P145L	probably damaging	Het
Exoc3l2	G	T	7: 19,203,813 (GRCm39)	R135L		Het
Fam83a	G	A	15: 57,849,569 (GRCm39)	A38T	probably damaging	Het
G6pc2	T	C	2: 69,053,344 (GRCm39)	Y133H	probably benign	Het
Gfy	T	C	7: 44,827,518 (GRCm39)	I193V	probably benign	Het
Ggnbp2	T	C	11: 84,744,899 (GRCm39)	T208A	probably benign	Het
Gm45783	T	C	7: 7,373,599 (GRCm39)	D61G	probably damaging	Het
Golga5	T	C	12: 102,450,835 (GRCm39)		probably null	Het
Ighe	A	G	12: 113,235,023 (GRCm39)	V379A		Het
Itpr3	C	A	17: 27,313,774 (GRCm39)	H573Q	probably benign	Het
Klhl2	A	G	8: 65,202,809 (GRCm39)	L463P	probably damaging	Het
Large1	T	G	8: 73,550,343 (GRCm39)	M619L	probably benign	Het
Limd1	T	A	9: 123,308,748 (GRCm39)	V149E	probably benign	Het
Lyz2	T	C	10: 117,118,144 (GRCm39)	K2E	probably damaging	Het
Man2c1	T	A	9: 57,048,412 (GRCm39)	S858T	probably damaging	Het
Nt5dc1	A	T	10: 34,180,932 (GRCm39)	N439K	probably benign	Het
Or4a2	A	G	2: 89,248,145 (GRCm39)	I204T	probably benign	Het
Or4n4b	G	A	14: 50,536,281 (GRCm39)	L162F	probably benign	Het
Or4p7	T	C	2: 88,222,224 (GRCm39)	V211A	possibly damaging	Het
Or51f1	A	T	7: 102,506,278 (GRCm39)	Y70*	probably null	Het
Or5d43	T	C	2: 88,105,445 (GRCm39)		probably benign	Het
Or7g27	A	C	9: 19,250,109 (GRCm39)	M118L	probably damaging	Het
Otogl	T	C	10: 107,722,843 (GRCm39)	N296S	probably benign	Het
Patj	A	G	4: 98,383,298 (GRCm39)	N789D	probably benign	Het
Pcsk6	A	G	7: 65,693,314 (GRCm39)	D851G	possibly damaging	Het
Peg3	T	C	7: 6,712,723 (GRCm39)	H833R	probably damaging	Het
Pira1	T	C	7: 3,742,023 (GRCm39)	E119G	not run	Het
Plekha5	A	G	6: 140,526,161 (GRCm39)	D933G	probably benign	Het
Pnma1	G	A	12: 84,193,903 (GRCm39)	R267C	probably damaging	Het
Ppp3cb	T	A	14: 20,558,619 (GRCm39)	H481L	probably benign	Het
Prl8a8	T	C	13: 27,695,418 (GRCm39)		probably null	Het
Ptma	GGAAGAAG	GGAAGAAGAAG	1: 86,457,261 (GRCm39)		probably benign	Het
Ptpro	C	A	6: 137,359,647 (GRCm39)	L406I	probably benign	Het
Rbpj	T	C	5: 53,758,276 (GRCm39)	S18P	probably benign	Het
Rhbg	C	T	3: 88,154,886 (GRCm39)	V173M	probably damaging	Het
Rps6kc1	A	G	1: 190,532,254 (GRCm39)	S583P	probably benign	Het
Ryr1	T	C	7: 28,794,630 (GRCm39)	S1217G	probably benign	Het
S1pr1	A	T	3: 115,505,922 (GRCm39)	I224N	probably damaging	Het
Sall1	C	T	8: 89,757,681 (GRCm39)	D808N	probably benign	Het
Shoc2	T	C	19: 53,976,467 (GRCm39)	V119A	probably benign	Het
Spata31h1	A	T	10: 82,124,798 (GRCm39)	Y2737*	probably null	Het
Spata31h1	T	C	10: 82,152,264 (GRCm39)	Y34C	unknown	Het
Ssh2	A	T	11: 77,328,542 (GRCm39)	E369D	probably benign	Het
Stx1b	C	T	7: 127,406,531 (GRCm39)	V273M	possibly damaging	Het
Syne2	A	G	12: 76,012,654 (GRCm39)	H2615R	probably benign	Het
Tmc8	T	C	11: 117,675,758 (GRCm39)	I225T	probably benign	Het
Tmem126b	A	G	7: 90,121,854 (GRCm39)	I52T	probably benign	Het
Top2b	G	A	14: 16,416,605 (GRCm38)	D1122N	probably benign	Het
Trav13-2	T	A	14: 53,872,363 (GRCm39)	S7T	possibly damaging	Het
Ttc1	A	T	11: 43,636,189 (GRCm39)	L18Q	probably damaging	Het
Ttn	A	T	2: 76,567,553 (GRCm39)	I27780N	probably damaging	Het
Ubfd1	T	C	7: 121,666,635 (GRCm39)	S44P	probably benign	Het
Vmn1r89	A	G	7: 12,953,632 (GRCm39)	K123E	probably damaging	Het
Vmn2r62	A	C	7: 42,437,316 (GRCm39)	F389L	possibly damaging	Het
Vps35l	C	T	7: 118,393,800 (GRCm39)		probably null	Het
Zdhhc11	T	A	13: 74,121,726 (GRCm39)	M79K	possibly damaging	Het
Zfp202	G	T	9: 40,118,640 (GRCm39)	V18F	possibly damaging	Het
Zfp39	A	G	11: 58,781,869 (GRCm39)	F298L	possibly damaging	Het
Znrf1	G	A	8: 112,264,071 (GRCm39)	G100D	probably damaging	Het

Other mutations in Gigyf1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00230:Gigyf1	APN	5	137,521,007 (GRCm39)	unclassified	probably benign
IGL00326:Gigyf1	APN	5	137,517,210 (GRCm39)	utr 5 prime	probably benign
IGL00935:Gigyf1	APN	5	137,523,096 (GRCm39)	missense	possibly damaging	0.95
IGL01717:Gigyf1	APN	5	137,523,953 (GRCm39)	missense	probably damaging	1.00
IGL02090:Gigyf1	APN	5	137,523,826 (GRCm39)	splice site	probably null
IGL02354:Gigyf1	APN	5	137,517,989 (GRCm39)	splice site	probably benign
IGL02361:Gigyf1	APN	5	137,517,989 (GRCm39)	splice site	probably benign
IGL03370:Gigyf1	APN	5	137,523,952 (GRCm39)	missense	possibly damaging	0.93
PIT4354001:Gigyf1	UTSW	5	137,522,366 (GRCm39)	missense	unknown
R1415:Gigyf1	UTSW	5	137,517,478 (GRCm39)	splice site	probably null
R1764:Gigyf1	UTSW	5	137,520,770 (GRCm39)	unclassified	probably benign
R2259:Gigyf1	UTSW	5	137,518,594 (GRCm39)	missense	possibly damaging	0.93
R2260:Gigyf1	UTSW	5	137,518,594 (GRCm39)	missense	possibly damaging	0.93
R4656:Gigyf1	UTSW	5	137,523,477 (GRCm39)	nonsense	probably null
R4717:Gigyf1	UTSW	5	137,523,494 (GRCm39)	missense	probably damaging	1.00
R4732:Gigyf1	UTSW	5	137,523,032 (GRCm39)	missense	probably benign	0.39
R4733:Gigyf1	UTSW	5	137,523,032 (GRCm39)	missense	probably benign	0.39
R4942:Gigyf1	UTSW	5	137,523,952 (GRCm39)	missense	possibly damaging	0.93
R5338:Gigyf1	UTSW	5	137,521,422 (GRCm39)	unclassified	probably benign
R5503:Gigyf1	UTSW	5	137,521,729 (GRCm39)	unclassified	probably benign
R5790:Gigyf1	UTSW	5	137,522,517 (GRCm39)	unclassified	probably benign
R5888:Gigyf1	UTSW	5	137,523,959 (GRCm39)	missense	probably damaging	1.00
R5955:Gigyf1	UTSW	5	137,521,769 (GRCm39)	splice site	probably null
R6544:Gigyf1	UTSW	5	137,523,321 (GRCm39)	missense	probably damaging	1.00
R7227:Gigyf1	UTSW	5	137,522,085 (GRCm39)	missense	unknown
R7660:Gigyf1	UTSW	5	137,519,231 (GRCm39)	missense	probably benign	0.23
R7959:Gigyf1	UTSW	5	137,522,581 (GRCm39)	missense	probably damaging	1.00
R8026:Gigyf1	UTSW	5	137,523,740 (GRCm39)	missense	probably damaging	1.00
R8159:Gigyf1	UTSW	5	137,520,457 (GRCm39)	missense	unknown
R8552:Gigyf1	UTSW	5	137,521,401 (GRCm39)	unclassified	probably benign
R8936:Gigyf1	UTSW	5	137,523,469 (GRCm39)	missense	probably damaging	0.99
R9622:Gigyf1	UTSW	5	137,522,926 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- AAACAATTCCTGGAGCGGAG -3'
(R):5'- GTAGTCATCCACGCTCTCGATC -3'

Sequencing Primer
(F):5'- CAGCAGCAGGTGGAGTCTTG -3'
(R):5'- GCTCTCGATCTCACCGGAAG -3'

Posted On

2019-10-17