Mutagenetix > Incidental Mutation

Incidental Mutation 'R0008:Tox'

58199

Institutional Source

Beutler Lab

Gene Symbol

Tox

Ensembl Gene

ENSMUSG00000041272

Gene Name

thymocyte selection-associated high mobility group box

Synonyms

1700007F02Rik

MMRRC Submission

038303-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0008 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

6686353-6991557 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 6842411 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Leucine at position 40 (M40L)

Ref Sequence

ENSEMBL: ENSMUSP00000037966 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039987]

AlphaFold

Q66JW3

PDB Structure

Solution structure of the HMG_box domain of thymus high mobility group box protein TOX from mouse [SOLUTION NMR]

Predicted Effect

probably benign
Transcript: ENSMUST00000039987
AA Change: M40L

PolyPhen 2 Score 0.406 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000037966
Gene: ENSMUSG00000041272
AA Change: M40L

Domain	Start	End	E-Value	Type
low complexity region	7	19	N/A	INTRINSIC
low complexity region	204	220	N/A	INTRINSIC
HMG	260	330	1.11e-19	SMART
low complexity region	416	439	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000147657

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000150082

Meta Mutation Damage Score

0.0845

Coding Region Coverage

1x: 99.4%
3x: 98.8%
10x: 97.4%
20x: 94.8%

Validation Efficiency

98% (109/111)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains a HMG box DNA binding domain. HMG boxes are found in many eukaryotic proteins involved in chromatin assembly, transcription and replication. This protein may function to regulate T-cell development.[provided by RefSeq, Apr 2009]
PHENOTYPE: Mice homozygous for a knock-out allele have a severe block in thymic positive selection leading to loss of CD4 T lineage cells, and display decreased NK cell numbers, severely reduced numbers of lymphoid tissue inducer cells, absence of all peripheral lymph nodes, and loss of Peyer's patches. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 98 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930579F01Rik	T	C	3: 137,882,346 (GRCm39)	K118R	possibly damaging	Het
Adtrp	T	C	13: 41,920,941 (GRCm39)	T88A	probably damaging	Het
Afap1l1	A	G	18: 61,889,976 (GRCm39)	S87P	probably benign	Het
Ankrd27	A	G	7: 35,303,125 (GRCm39)	K196R	probably benign	Het
Apoe	G	A	7: 19,431,005 (GRCm39)	T79M	probably damaging	Het
Arrdc3	T	A	13: 81,032,011 (GRCm39)	Y81*	probably null	Het
Arrdc3	T	A	13: 81,039,194 (GRCm39)	I75N	probably damaging	Het
Asah2	T	A	19: 31,981,131 (GRCm39)	K629*	probably null	Het
Ass1	A	T	2: 31,404,831 (GRCm39)	N371Y	probably damaging	Het
C130074G19Rik	A	G	1: 184,615,119 (GRCm39)	S24P	probably benign	Het
C87436	A	G	6: 86,423,265 (GRCm39)		probably benign	Het
Calcrl	T	C	2: 84,203,618 (GRCm39)	D54G	probably benign	Het
Clcn2	T	C	16: 20,529,140 (GRCm39)	N367S	probably null	Het
Cnot1	G	T	8: 96,487,969 (GRCm39)	D562E	probably damaging	Het
Commd6	G	A	14: 101,877,709 (GRCm39)		probably benign	Het
Cox6a2	G	A	7: 127,805,212 (GRCm39)		probably benign	Het
Cp	T	A	3: 20,022,287 (GRCm39)	Y230N	probably damaging	Het
Dclre1c	T	C	2: 3,439,032 (GRCm39)	V64A	probably damaging	Het
Eng	T	C	2: 32,567,692 (GRCm39)	V110A	probably damaging	Het
Esyt3	T	C	9: 99,220,860 (GRCm39)	I114M	possibly damaging	Het
Fam83h	A	T	15: 75,875,811 (GRCm39)	Y509N	probably damaging	Het
Fat2	A	T	11: 55,202,075 (GRCm39)	L333H	probably damaging	Het
Fbxo21	A	G	5: 118,146,078 (GRCm39)	N567S	possibly damaging	Het
Fcsk	T	C	8: 111,610,865 (GRCm39)		probably benign	Het
Fn1	A	T	1: 71,634,879 (GRCm39)	L1964Q	probably damaging	Het
Gorasp1	G	T	9: 119,757,312 (GRCm39)	S353R	possibly damaging	Het
Grk2	C	T	19: 4,337,262 (GRCm39)	E646K	probably damaging	Het
Hoxc11	T	C	15: 102,863,397 (GRCm39)	V146A	probably damaging	Het
Igf2bp2	T	C	16: 21,894,841 (GRCm39)	T301A	probably benign	Het
Il11	T	C	7: 4,776,658 (GRCm39)	S111G	probably benign	Het
Ist1	A	T	8: 110,403,418 (GRCm39)	I273K	probably benign	Het
Kdm2b	G	A	5: 123,019,806 (GRCm39)	S738L	probably benign	Het
Lrp2	T	A	2: 69,346,895 (GRCm39)	N784Y	probably benign	Het
Lrp6	T	C	6: 134,462,716 (GRCm39)	E648G	probably damaging	Het
Mapk15	G	A	15: 75,870,103 (GRCm39)	E408K	probably benign	Het
Mdn1	T	A	4: 32,718,317 (GRCm39)	F2191I	possibly damaging	Het
Metrn	C	A	17: 26,015,479 (GRCm39)	V79F	possibly damaging	Het
Mtbp	T	A	15: 55,449,889 (GRCm39)		probably benign	Het
Myh11	C	A	16: 14,041,883 (GRCm39)	Q720H	probably damaging	Het
Myo3a	T	A	2: 22,469,753 (GRCm39)	I508N	probably damaging	Het
Nat9	A	T	11: 115,075,941 (GRCm39)	Y27N	probably damaging	Het
Ncapg2	T	C	12: 116,393,455 (GRCm39)	F553S	probably damaging	Het
Nipsnap3b	T	A	4: 53,015,112 (GRCm39)	L53Q	probably damaging	Het
Nlrp3	A	T	11: 59,449,274 (GRCm39)	H852L	probably benign	Het
Or2d3b	A	G	7: 106,514,226 (GRCm39)	I274V	probably benign	Het
Or2t6	T	A	14: 14,176,092 (GRCm38)		probably benign	Het
Or4a78	T	A	2: 89,497,428 (GRCm39)	K267N	probably damaging	Het
Or52e3	A	T	7: 102,869,558 (GRCm39)	D211V	probably damaging	Het
Or52e3	G	A	7: 102,869,584 (GRCm39)	A220T	probably benign	Het
Or5b122	A	G	19: 13,563,240 (GRCm39)	I191V	probably benign	Het
Pax9	A	G	12: 56,756,528 (GRCm39)	T289A	probably benign	Het
Pcyt2	A	T	11: 120,506,695 (GRCm39)	I53N	possibly damaging	Het
Pdlim4	C	T	11: 53,945,875 (GRCm39)	V327M	probably damaging	Het
Pdzph1	T	A	17: 59,229,756 (GRCm39)		probably benign	Het
Plekhm2	C	T	4: 141,369,704 (GRCm39)		probably benign	Het
Ppt1	T	C	4: 122,742,216 (GRCm39)		probably benign	Het
Prdm1	C	T	10: 44,317,675 (GRCm39)	E398K	probably damaging	Het
Prep	T	C	10: 44,991,174 (GRCm39)	V280A	probably benign	Het
Prkdc	T	A	16: 15,526,565 (GRCm39)		probably benign	Het
Proser3	G	A	7: 30,239,563 (GRCm39)	R514C	probably damaging	Het
Ptk7	G	A	17: 46,883,688 (GRCm39)		probably benign	Het
Rbm45	T	C	2: 76,208,742 (GRCm39)	Y293H	probably damaging	Het
Rnf213	A	C	11: 119,355,878 (GRCm39)	E4108A	possibly damaging	Het
Sdk2	A	G	11: 113,747,581 (GRCm39)	L643P	probably damaging	Het
Sec24d	C	A	3: 123,144,525 (GRCm39)		probably benign	Het
Sh2d3c	C	G	2: 32,643,033 (GRCm39)	H587D	probably damaging	Het
Slc1a1	G	A	19: 28,878,884 (GRCm39)	G208S	probably benign	Het
Slc35b4	A	T	6: 34,135,452 (GRCm39)	Y287N	probably damaging	Het
Slc46a2	T	A	4: 59,914,544 (GRCm39)	L126F	probably damaging	Het
Slc4a8	T	C	15: 100,698,374 (GRCm39)	M621T	possibly damaging	Het
Slc9b2	T	A	3: 135,042,269 (GRCm39)	V516D	possibly damaging	Het
Slco1a6	T	A	6: 142,102,948 (GRCm39)		probably benign	Het
Sncg	C	T	14: 34,096,495 (GRCm39)	V15I	probably benign	Het
Srgap2	T	C	1: 131,283,302 (GRCm39)	T260A	probably damaging	Het
Stk10	T	A	11: 32,537,305 (GRCm39)		probably benign	Het
Taf5	A	G	19: 47,064,301 (GRCm39)	S415G	possibly damaging	Het
Tdp1	C	T	12: 99,921,217 (GRCm39)		probably benign	Het
Tdp2	T	G	13: 25,025,333 (GRCm39)		probably null	Het
Tgfbi	T	A	13: 56,777,587 (GRCm39)	I357N	probably benign	Het
Tmem116	A	G	5: 121,633,159 (GRCm39)	T178A	probably damaging	Het
Tnrc6a	G	A	7: 122,769,617 (GRCm39)	R469H	probably benign	Het
Top2a	A	T	11: 98,893,729 (GRCm39)	L1055*	probably null	Het
Trib2	A	T	12: 15,859,930 (GRCm39)	H110Q	probably benign	Het
Trpa1	A	G	1: 14,973,439 (GRCm39)	I293T	possibly damaging	Het
Trpv2	A	G	11: 62,481,086 (GRCm39)	Y395C	probably damaging	Het
Ubn2	T	A	6: 38,411,535 (GRCm39)		probably null	Het
Ubr4	C	T	4: 139,157,487 (GRCm39)	T2348M	probably damaging	Het
Ubxn4	G	A	1: 128,190,641 (GRCm39)	E256K	probably benign	Het
Vmn1r33	C	A	6: 66,589,510 (GRCm39)	G15*	probably null	Het
Vmn1r37	T	A	6: 66,708,769 (GRCm39)	S95T	probably benign	Het
Vmn2r57	A	G	7: 41,050,076 (GRCm39)	C558R	probably damaging	Het
Vnn1	T	C	10: 23,774,500 (GRCm39)		probably null	Het
Vps13c	T	C	9: 67,826,544 (GRCm39)	V1395A	probably benign	Het
Vwa7	A	G	17: 35,238,781 (GRCm39)	I290V	probably benign	Het
Wdr93	A	G	7: 79,408,221 (GRCm39)	E234G	probably damaging	Het
Zfp385b	A	T	2: 77,246,291 (GRCm39)	S245R	probably benign	Het
Zfp942	A	T	17: 22,147,319 (GRCm39)	C437S	probably damaging	Het
Zfyve9	T	A	4: 108,575,902 (GRCm39)	E393V	possibly damaging	Het

Other mutations in Tox

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01359:Tox	APN	4	6,697,583 (GRCm39)	missense	probably damaging	0.99
IGL01481:Tox	APN	4	6,842,396 (GRCm39)	missense	probably damaging	0.99
IGL01600:Tox	APN	4	6,697,585 (GRCm39)	missense	probably damaging	0.98
IGL01616:Tox	APN	4	6,688,430 (GRCm39)	missense	probably damaging	0.99
IGL02160:Tox	APN	4	6,711,537 (GRCm39)	missense	probably damaging	0.99
IGL02390:Tox	APN	4	6,697,534 (GRCm39)	missense	possibly damaging	0.90
IGL03243:Tox	APN	4	6,697,597 (GRCm39)	missense	possibly damaging	0.76
R0008:Tox	UTSW	4	6,842,411 (GRCm39)	missense	probably benign	0.41
R1147:Tox	UTSW	4	6,823,055 (GRCm39)	missense	possibly damaging	0.74
R1147:Tox	UTSW	4	6,823,055 (GRCm39)	missense	possibly damaging	0.74
R1159:Tox	UTSW	4	6,697,600 (GRCm39)	missense	probably benign	0.37
R1903:Tox	UTSW	4	6,688,948 (GRCm39)	missense	probably damaging	0.99
R1961:Tox	UTSW	4	6,688,886 (GRCm39)	missense	probably damaging	0.96
R2484:Tox	UTSW	4	6,688,886 (GRCm39)	missense	probably damaging	0.96
R3692:Tox	UTSW	4	6,697,535 (GRCm39)	missense	probably benign	0.05
R4072:Tox	UTSW	4	6,842,396 (GRCm39)	missense	probably damaging	0.99
R4635:Tox	UTSW	4	6,990,501 (GRCm39)	utr 5 prime	probably benign
R4815:Tox	UTSW	4	6,823,033 (GRCm39)	missense	probably benign
R5099:Tox	UTSW	4	6,688,958 (GRCm39)	missense	probably benign	0.28
R5421:Tox	UTSW	4	6,842,409 (GRCm39)	missense	possibly damaging	0.79
R5537:Tox	UTSW	4	6,697,510 (GRCm39)	missense	probably damaging	1.00
R5630:Tox	UTSW	4	6,688,835 (GRCm39)	small insertion	probably benign
R5883:Tox	UTSW	4	6,697,444 (GRCm39)	missense	probably benign
R6351:Tox	UTSW	4	6,741,536 (GRCm39)	missense	probably benign	0.11
R6351:Tox	UTSW	4	6,697,439 (GRCm39)	missense	probably benign
R6448:Tox	UTSW	4	6,822,975 (GRCm39)	missense	probably benign	0.08
R6934:Tox	UTSW	4	6,697,635 (GRCm39)	missense	probably damaging	0.98
R7513:Tox	UTSW	4	6,741,507 (GRCm39)	missense	probably benign
R7915:Tox	UTSW	4	6,822,949 (GRCm39)	missense	probably benign
R8223:Tox	UTSW	4	6,842,408 (GRCm39)	missense	probably damaging	1.00
R8766:Tox	UTSW	4	6,823,047 (GRCm39)	missense	probably damaging	0.99
R9702:Tox	UTSW	4	6,697,418 (GRCm39)	missense	probably benign	0.02
Z1088:Tox	UTSW	4	6,688,450 (GRCm39)	missense	probably damaging	1.00
Z1176:Tox	UTSW	4	6,990,629 (GRCm39)	start gained	probably benign

Predicted Primers

PCR Primer
(F):5'- CATTCTTCAACAACTGCCAAGGCTG -3'
(R):5'- CCAAATCAATGACACGCAGGGTCAG -3'

Sequencing Primer
(F):5'- CAACTGCCAAGGCTGGTATTTTATC -3'
(R):5'- GATGTGGCTCACTCACTACAAC -3'

Posted On

2013-07-11