Mutagenetix > Incidental Mutation

Incidental Mutation 'R7520:Sp110'

582604

Institutional Source

Beutler Lab

Gene Symbol

Sp110

Ensembl Gene

ENSMUSG00000070034

Gene Name

Sp110 nuclear body protein

Synonyms

Ifi75, 5830484A20Rik, 5031415C07Rik, Ipr1, 52kDa

MMRRC Submission

045592-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.572) question?

Stock #

R7520 (G1)

Quality Score

106.008

Status

Not validated

Chromosome

Chromosomal Location

85504620-85526538 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 85506813 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Cysteine at position 417 (R417C)

Ref Sequence

ENSEMBL: ENSMUSP00000091226 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000093508] [ENSMUST00000178024]

AlphaFold

Q8BVK9

PDB Structure

Solution structure of the SAND domain of the putative nuclear protein homolog (5830484A20Rik) [SOLUTION NMR]

Predicted Effect

probably benign
Transcript: ENSMUST00000093508
AA Change: R417C

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000091226
Gene: ENSMUSG00000070034
AA Change: R417C

Domain	Start	End	E-Value	Type
Pfam:Sp100	8	106	2.3e-41	PFAM
low complexity region	242	254	N/A	INTRINSIC
low complexity region	259	269	N/A	INTRINSIC
SAND	360	433	3.55e-28	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000178024

SMART Domains

Protein: ENSMUSP00000136816
Gene: ENSMUSG00000094127

Domain	Start	End	E-Value	Type
low complexity region	1	10	N/A	INTRINSIC
low complexity region	82	122	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

100% (50/50)

Allele List at MGI

Other mutations in this stock

Total: 50 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadacl4fm2	T	C	4: 144,281,859 (GRCm39)	Y311C	probably damaging	Het
Abca1	A	T	4: 53,078,114 (GRCm39)	I886N	probably benign	Het
Adamts6	A	G	13: 104,433,694 (GRCm39)	H41R	probably benign	Het
Adck1	T	C	12: 88,425,975 (GRCm39)		probably null	Het
Atat1	G	T	17: 36,208,706 (GRCm39)	T398K	probably benign	Het
Bahcc1	A	G	11: 120,167,031 (GRCm39)	E1144G	possibly damaging	Het
Cand2	G	T	6: 115,762,212 (GRCm39)	E213*	probably null	Het
Cep350	A	G	1: 155,791,375 (GRCm39)	S1250P	probably benign	Het
Cln3	A	G	7: 126,180,852 (GRCm39)	L63P	probably damaging	Het
Col4a4	A	T	1: 82,484,808 (GRCm39)	C486*	probably null	Het
Ctnnal1	A	T	4: 56,837,838 (GRCm39)	M264K	probably damaging	Het
Ddr2	T	A	1: 169,812,008 (GRCm39)	D738V	probably damaging	Het
Dnah6	T	C	6: 73,104,887 (GRCm39)	M1901V	probably benign	Het
Dnhd1	A	G	7: 105,345,255 (GRCm39)	T2200A	probably benign	Het
Dolk	A	G	2: 30,174,555 (GRCm39)	Y497H	probably benign	Het
Drd5	T	C	5: 38,478,195 (GRCm39)	V396A	probably benign	Het
Epsti1	A	T	14: 78,200,883 (GRCm39)		probably null	Het
Erich3	A	G	3: 154,468,763 (GRCm39)	T1072A	unknown	Het
Ero1a	A	T	14: 45,544,032 (GRCm39)	N57K	probably damaging	Het
Exph5	T	C	9: 53,278,514 (GRCm39)		probably null	Het
Frmd5	C	T	2: 121,384,745 (GRCm39)		probably null	Het
H2-Q7	A	G	17: 35,661,686 (GRCm39)	T310A	probably benign	Het
Hecw2	G	T	1: 53,965,215 (GRCm39)	A537E	probably benign	Het
Itga4	A	T	2: 79,131,333 (GRCm39)	D567V	probably damaging	Het
Kcnu1	A	T	8: 26,375,368 (GRCm39)	N361Y	probably damaging	Het
Keap1	A	G	9: 21,144,787 (GRCm39)	S408P	probably benign	Het
Mamdc4	T	A	2: 25,455,360 (GRCm39)	I928F	possibly damaging	Het
Mboat4	T	C	8: 34,591,028 (GRCm39)	F155S	probably benign	Het
Mtbp	A	G	15: 55,440,742 (GRCm39)		probably benign	Het
Nmi	T	G	2: 51,842,492 (GRCm39)	K200T	probably benign	Het
Or2n1e	G	A	17: 38,586,331 (GRCm39)	C223Y	probably benign	Het
Or8g19	G	T	9: 39,055,414 (GRCm39)	R6L	probably benign	Het
Pcdha7	G	A	18: 37,108,366 (GRCm39)	V464M	probably damaging	Het
Peg10	T	A	6: 4,756,796 (GRCm39)	N457K	unknown	Het
Plekha7	A	T	7: 115,736,519 (GRCm39)	I944N	possibly damaging	Het
Plpp1	T	A	13: 112,937,781 (GRCm39)	D13E	possibly damaging	Het
Pnpla6	G	T	8: 3,587,508 (GRCm39)	V1070F	probably damaging	Het
Riox1	T	A	12: 83,998,545 (GRCm39)	Y360*	probably null	Het
Sdhb	A	G	4: 140,693,882 (GRCm39)	D50G	possibly damaging	Het
Slc35f2	T	A	9: 53,708,385 (GRCm39)	V126D	possibly damaging	Het
Slmap	A	G	14: 26,148,575 (GRCm39)	V612A	probably benign	Het
Snap91	T	A	9: 86,721,702 (GRCm39)	I46F	probably damaging	Het
Taar7b	T	C	10: 23,876,381 (GRCm39)	L182P	probably damaging	Het
Tmc1	T	A	19: 20,776,542 (GRCm39)	M606L	probably damaging	Het
Trpm8	T	A	1: 88,271,043 (GRCm39)	D444E	probably benign	Het
Tsen54	A	G	11: 115,711,797 (GRCm39)	T405A	probably damaging	Het
Ttll5	T	C	12: 85,946,245 (GRCm39)	W492R	probably damaging	Het
Ttn	T	A	2: 76,728,123 (GRCm39)	T5566S	unknown	Het
Utp20	A	T	10: 88,654,457 (GRCm39)	M210K	probably damaging	Het
Zfand1	A	G	3: 10,411,009 (GRCm39)	V115A	probably damaging	Het

Other mutations in Sp110

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00503:Sp110	APN	1	85,505,050 (GRCm39)	missense	probably benign
IGL00510:Sp110	APN	1	85,505,050 (GRCm39)	missense	probably benign
IGL00516:Sp110	APN	1	85,505,050 (GRCm39)	missense	probably benign
IGL00990:Sp110	APN	1	85,514,002 (GRCm39)	missense	possibly damaging	0.51
IGL03382:Sp110	APN	1	85,505,050 (GRCm39)	missense	probably benign
FR4342:Sp110	UTSW	1	85,515,209 (GRCm39)	small insertion	probably benign
FR4976:Sp110	UTSW	1	85,515,210 (GRCm39)	small insertion	probably benign
IGL03147:Sp110	UTSW	1	85,519,288 (GRCm39)	frame shift	probably null
PIT4131001:Sp110	UTSW	1	85,513,975 (GRCm39)	missense	probably benign	0.01
PIT4131001:Sp110	UTSW	1	85,513,971 (GRCm39)	missense	probably benign	0.05
PIT4142001:Sp110	UTSW	1	85,513,975 (GRCm39)	missense	probably benign	0.01
PIT4142001:Sp110	UTSW	1	85,513,971 (GRCm39)	missense	probably benign	0.05
R0472:Sp110	UTSW	1	85,516,841 (GRCm39)	missense	possibly damaging	0.79
R0483:Sp110	UTSW	1	85,516,839 (GRCm39)	missense	probably damaging	0.99
R0551:Sp110	UTSW	1	85,516,821 (GRCm39)	splice site	probably benign
R0638:Sp110	UTSW	1	85,505,050 (GRCm39)	missense	probably benign
R0806:Sp110	UTSW	1	85,514,002 (GRCm39)	missense	possibly damaging	0.51
R0806:Sp110	UTSW	1	85,513,975 (GRCm39)	missense	probably benign	0.01
R1074:Sp110	UTSW	1	85,516,839 (GRCm39)	missense	probably damaging	0.99
R1079:Sp110	UTSW	1	85,516,825 (GRCm39)	splice site	probably benign
R1228:Sp110	UTSW	1	85,519,481 (GRCm39)	missense	probably benign	0.03
R1403:Sp110	UTSW	1	85,506,800 (GRCm39)	missense	probably benign	0.00
R1406:Sp110	UTSW	1	85,506,800 (GRCm39)	missense	probably benign	0.00
R1418:Sp110	UTSW	1	85,522,106 (GRCm39)	missense	probably benign	0.08
R1718:Sp110	UTSW	1	85,522,106 (GRCm39)	missense	probably benign	0.08
R1744:Sp110	UTSW	1	85,522,093 (GRCm39)	missense	probably benign	0.26
R1747:Sp110	UTSW	1	85,516,839 (GRCm39)	missense	probably damaging	0.99
R1806:Sp110	UTSW	1	85,523,831 (GRCm39)	critical splice acceptor site	probably null
R1957:Sp110	UTSW	1	85,505,050 (GRCm39)	missense	probably benign
R2404:Sp110	UTSW	1	85,505,050 (GRCm39)	missense	probably benign
R2964:Sp110	UTSW	1	85,505,050 (GRCm39)	missense	probably benign
R3176:Sp110	UTSW	1	85,505,050 (GRCm39)	missense	probably benign
R4190:Sp110	UTSW	1	85,516,839 (GRCm39)	missense	probably damaging	0.99
R4398:Sp110	UTSW	1	85,505,050 (GRCm39)	missense	probably benign
R4505:Sp110	UTSW	1	85,516,894 (GRCm39)	missense	probably damaging	1.00
R4565:Sp110	UTSW	1	85,516,839 (GRCm39)	missense	probably damaging	0.99
R4625:Sp110	UTSW	1	85,505,050 (GRCm39)	missense	probably benign
R4922:Sp110	UTSW	1	85,516,839 (GRCm39)	missense	probably damaging	0.99
R4986:Sp110	UTSW	1	85,519,481 (GRCm39)	missense	probably benign	0.03
R5014:Sp110	UTSW	1	85,505,050 (GRCm39)	missense	probably benign
R5080:Sp110	UTSW	1	85,523,776 (GRCm39)	nonsense	probably null
R5087:Sp110	UTSW	1	85,516,839 (GRCm39)	missense	probably damaging	0.99
R5254:Sp110	UTSW	1	85,504,923 (GRCm39)	utr 3 prime	probably benign
R5335:Sp110	UTSW	1	85,516,839 (GRCm39)	missense	probably damaging	0.99
R5353:Sp110	UTSW	1	85,516,841 (GRCm39)	missense	possibly damaging	0.79
R5383:Sp110	UTSW	1	85,519,290 (GRCm39)	frame shift	probably null
R5387:Sp110	UTSW	1	85,516,839 (GRCm39)	missense	probably damaging	0.99
R5389:Sp110	UTSW	1	85,516,839 (GRCm39)	missense	probably damaging	0.99
R5398:Sp110	UTSW	1	85,516,839 (GRCm39)	missense	probably damaging	0.99
R5443:Sp110	UTSW	1	85,516,841 (GRCm39)	missense	possibly damaging	0.79
R5447:Sp110	UTSW	1	85,516,839 (GRCm39)	missense	probably damaging	0.99
R5729:Sp110	UTSW	1	85,516,839 (GRCm39)	missense	probably damaging	0.99
R5752:Sp110	UTSW	1	85,504,923 (GRCm39)	utr 3 prime	probably benign
R5754:Sp110	UTSW	1	85,504,923 (GRCm39)	utr 3 prime	probably benign
R5799:Sp110	UTSW	1	85,505,050 (GRCm39)	missense	probably benign
R6027:Sp110	UTSW	1	85,505,039 (GRCm39)	missense	possibly damaging	0.83
R6171:Sp110	UTSW	1	85,505,050 (GRCm39)	missense	probably benign
R6367:Sp110	UTSW	1	85,522,013 (GRCm39)	missense	probably benign	0.00
R6771:Sp110	UTSW	1	85,520,000 (GRCm39)	splice site	probably null
R7097:Sp110	UTSW	1	85,507,406 (GRCm39)	missense	possibly damaging	0.80
R7519:Sp110	UTSW	1	85,506,813 (GRCm39)	missense	probably benign	0.01
R7594:Sp110	UTSW	1	85,506,813 (GRCm39)	missense	probably benign	0.01
R7596:Sp110	UTSW	1	85,506,813 (GRCm39)	missense	probably benign	0.01
R7598:Sp110	UTSW	1	85,506,813 (GRCm39)	missense	probably benign	0.01
R7600:Sp110	UTSW	1	85,506,813 (GRCm39)	missense	probably benign	0.01
R7601:Sp110	UTSW	1	85,506,813 (GRCm39)	missense	probably benign	0.01
R7602:Sp110	UTSW	1	85,506,813 (GRCm39)	missense	probably benign	0.01
R7640:Sp110	UTSW	1	85,506,813 (GRCm39)	missense	probably benign	0.01
R7641:Sp110	UTSW	1	85,506,813 (GRCm39)	missense	probably benign	0.01
R7674:Sp110	UTSW	1	85,506,813 (GRCm39)	missense	probably benign	0.01
R7691:Sp110	UTSW	1	85,506,813 (GRCm39)	missense	probably benign	0.01
R7695:Sp110	UTSW	1	85,506,813 (GRCm39)	missense	probably benign	0.01
R8072:Sp110	UTSW	1	85,515,207 (GRCm39)	small insertion	probably benign
R8794:Sp110	UTSW	1	85,511,231 (GRCm39)	critical splice donor site	probably null
R9284:Sp110	UTSW	1	85,507,363 (GRCm39)	critical splice donor site	probably null
R9350:Sp110	UTSW	1	85,506,813 (GRCm39)	missense	probably benign	0.01
X0035:Sp110	UTSW	1	85,513,975 (GRCm39)	missense	probably benign	0.01

Predicted Primers

Posted On

2019-10-17