Mutagenetix > Incidental Mutation

Incidental Mutation 'R0616:Pcdhb9'

58368

Institutional Source

Beutler Lab

Gene Symbol

Pcdhb9

Ensembl Gene

ENSMUSG00000051242

Gene Name

protocadherin beta 9

Synonyms

Pcdhb4C, PcdhbI

MMRRC Submission

038805-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.106) question?

Stock #

R0616 (G1)

Quality Score

206

Status

Not validated

Chromosome

Chromosomal Location

37533908-37536962 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 37535028 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Lysine to Stop codon at position 341 (K341*)

Ref Sequence

ENSEMBL: ENSMUSP00000058801 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000057228] [ENSMUST00000115661] [ENSMUST00000194544]

AlphaFold

E9Q5G2

Predicted Effect

probably null
Transcript: ENSMUST00000057228
AA Change: K341*

SMART Domains

Protein: ENSMUSP00000058801
Gene: ENSMUSG00000051242
AA Change: K341*

Domain	Start	End	E-Value	Type
Pfam:Cadherin_2	65	147	2.3e-33	PFAM
CA	190	275	1.28e-17	SMART
CA	299	380	7.6e-25	SMART
CA	403	484	5.81e-21	SMART
CA	508	594	9.8e-28	SMART
CA	624	705	1.86e-10	SMART
Pfam:Cadherin_C_2	722	805	2.3e-27	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000115661

SMART Domains

Protein: ENSMUSP00000111325
Gene: ENSMUSG00000103458

Domain	Start	End	E-Value	Type
CA	20	131	5.3e-2	SMART
CA	155	240	1.51e-19	SMART
CA	264	348	7.6e-25	SMART
CA	372	453	1.42e-24	SMART
CA	477	563	1.42e-24	SMART
CA	594	674	4.12e-12	SMART
low complexity region	706	721	N/A	INTRINSIC
Pfam:Cadherin_tail	796	930	3.9e-58	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000193984

Predicted Effect

probably benign
Transcript: ENSMUST00000194544

SMART Domains

Protein: ENSMUSP00000141847
Gene: ENSMUSG00000102836

Domain	Start	End	E-Value	Type
Blast:CA	18	66	5e-20	BLAST

Coding Region Coverage

1x: 99.4%
3x: 98.9%
10x: 97.5%
20x: 95.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 89 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca12	G	T	1: 71,341,830 (GRCm39)	Q1044K	probably damaging	Het
Abi3bp	A	T	16: 56,474,433 (GRCm39)	T723S	probably damaging	Het
Ackr3	G	A	1: 90,142,191 (GRCm39)	V217I	probably benign	Het
Acnat2	A	G	4: 49,380,269 (GRCm39)	S370P	probably damaging	Het
Arap1	A	G	7: 101,050,857 (GRCm39)	R1152G	possibly damaging	Het
Arhgap15	G	A	2: 44,006,729 (GRCm39)		probably null	Het
Arhgap5	C	T	12: 52,563,848 (GRCm39)	T273I	possibly damaging	Het
Armh4	G	T	14: 50,011,113 (GRCm39)	T198K	possibly damaging	Het
C1s2	T	C	6: 124,605,723 (GRCm39)	E332G	probably damaging	Het
Camp	G	A	9: 109,677,707 (GRCm39)	R88W	probably benign	Het
Cdkl2	A	G	5: 92,156,863 (GRCm39)	M564T	probably benign	Het
Ceacam20	A	G	7: 19,704,321 (GRCm39)	H124R	probably benign	Het
Cep19	C	T	16: 31,922,829 (GRCm39)	R32C	probably damaging	Het
Cep295	G	A	9: 15,243,618 (GRCm39)	Q1565*	probably null	Het
Chd3	T	C	11: 69,236,313 (GRCm39)	E1932G	probably damaging	Het
Cibar1	G	A	4: 12,168,234 (GRCm39)	R210*	probably null	Het
Cnr2	G	T	4: 135,644,873 (GRCm39)	W317L	probably benign	Het
Cntnap5a	C	T	1: 116,508,279 (GRCm39)	H1264Y	possibly damaging	Het
Depdc7	T	A	2: 104,557,650 (GRCm39)	N200I	probably benign	Het
Dock4	T	C	12: 40,754,414 (GRCm39)	S468P	probably benign	Het
Dscc1	C	A	15: 54,946,966 (GRCm39)	C253F	probably benign	Het
Fam217a	C	A	13: 35,097,666 (GRCm39)	S55I	probably benign	Het
Farp1	G	A	14: 121,514,434 (GRCm39)	R921H	probably damaging	Het
Fat4	A	G	3: 38,997,019 (GRCm39)	D1746G	probably damaging	Het
Fbxw5	T	C	2: 25,392,517 (GRCm39)	F100L	probably damaging	Het
Gli3	C	A	13: 15,836,991 (GRCm39)	T458K	possibly damaging	Het
Gm4841	T	C	18: 60,404,009 (GRCm39)	Y28C	probably benign	Het
Gprc5d	T	C	6: 135,093,430 (GRCm39)	E159G	probably benign	Het
Grm4	A	T	17: 27,653,538 (GRCm39)	I757N	probably damaging	Het
Hagh	A	G	17: 25,076,551 (GRCm39)	Y94C	probably damaging	Het
Hycc1	T	C	5: 24,191,770 (GRCm39)	T44A	probably damaging	Het
Itpkb	T	C	1: 180,249,301 (GRCm39)	I892T	probably damaging	Het
Kcmf1	T	C	6: 72,827,467 (GRCm39)	I58V	probably benign	Het
Khdrbs2	A	G	1: 32,506,856 (GRCm39)	I167V	possibly damaging	Het
Kmt2c	A	G	5: 25,504,250 (GRCm39)	I275T	probably benign	Het
Lingo4	A	G	3: 94,310,388 (GRCm39)	K442R	probably benign	Het
Mak	T	C	13: 41,195,661 (GRCm39)	N382D	probably benign	Het
Maob	G	A	X: 16,576,402 (GRCm39)	T480I	possibly damaging	Het
Mcoln1	A	G	8: 3,565,025 (GRCm39)	E573G	probably benign	Het
Ms4a6b	G	A	19: 11,504,262 (GRCm39)		probably null	Het
Muc5ac	A	G	7: 141,349,981 (GRCm39)	M576V	probably benign	Het
Nme8	T	A	13: 19,875,029 (GRCm39)	D126V	probably benign	Het
Npy2r	T	A	3: 82,448,670 (GRCm39)	D35V	possibly damaging	Het
Nrxn1	T	C	17: 90,670,285 (GRCm39)	D193G	probably damaging	Het
Or2g7	A	C	17: 38,378,131 (GRCm39)	E23A	probably damaging	Het
Or2y1e	T	C	11: 49,218,583 (GRCm39)	L115P	probably damaging	Het
Or4c10b	T	A	2: 89,711,935 (GRCm39)	V255E	probably benign	Het
Or4d5	A	T	9: 40,012,283 (GRCm39)	F168I	probably damaging	Het
Or52b4i	T	A	7: 102,191,761 (GRCm39)	M206K	possibly damaging	Het
Or6d14	A	G	6: 116,533,889 (GRCm39)	I168V	probably benign	Het
Or8b3b	A	T	9: 38,584,776 (GRCm39)	M1K	probably null	Het
Or8c17	G	T	9: 38,180,630 (GRCm39)	V266L	probably benign	Het
Or8g18	G	A	9: 39,148,946 (GRCm39)	T258M	probably benign	Het
Pabpc2	A	T	18: 39,906,792 (GRCm39)	H19L	possibly damaging	Het
Pde4dip	T	C	3: 97,654,849 (GRCm39)	I859M	probably benign	Het
Pfkfb2	T	C	1: 130,634,159 (GRCm39)		probably null	Het
Pigg	C	T	5: 108,461,951 (GRCm39)	T94M	probably damaging	Het
Pik3c2b	T	C	1: 133,028,569 (GRCm39)	F1353L	probably damaging	Het
Prg4	T	C	1: 150,336,462 (GRCm39)	D87G	probably damaging	Het
Prkdc	A	T	16: 15,508,271 (GRCm39)	D974V	probably damaging	Het
Prmt3	A	G	7: 49,437,076 (GRCm39)	Y217C	probably damaging	Het
Proser1	A	G	3: 53,382,118 (GRCm39)	T192A	probably damaging	Het
Rab3d	G	A	9: 21,826,060 (GRCm39)	T118M	probably damaging	Het
Rb1cc1	A	G	1: 6,314,486 (GRCm39)	K386R	possibly damaging	Het
Rcn2	A	G	9: 55,963,534 (GRCm39)	D221G	probably benign	Het
Rhbdl3	T	G	11: 80,222,687 (GRCm39)	H245Q	probably damaging	Het
Ribc1	T	C	X: 150,788,787 (GRCm39)	E204G	probably damaging	Het
Rpap1	G	A	2: 119,608,601 (GRCm39)	L254F	probably damaging	Het
Rrp12	A	G	19: 41,880,988 (GRCm39)	F148L	possibly damaging	Het
Rusf1	A	T	7: 127,871,803 (GRCm39)		probably null	Het
Setdb1	A	T	3: 95,249,109 (GRCm39)	I333K	probably damaging	Het
Simc1	A	G	13: 54,694,845 (GRCm39)	I1210V	probably benign	Het
Smchd1	T	A	17: 71,686,569 (GRCm39)	D1379V	probably benign	Het
Snap29	A	T	16: 17,240,370 (GRCm39)	K159*	probably null	Het
Spdye4c	A	T	2: 128,436,132 (GRCm39)	K176M	possibly damaging	Het
Stk31	T	A	6: 49,400,419 (GRCm39)	W415R	probably damaging	Het
Supt6	C	T	11: 78,100,321 (GRCm39)	R1497Q	probably damaging	Het
Tenm3	A	G	8: 48,729,191 (GRCm39)	I1605T	possibly damaging	Het
Ttn	T	C	2: 76,676,967 (GRCm39)		probably null	Het
Ttn	A	G	2: 76,728,011 (GRCm39)		probably benign	Het
Ucp3	A	T	7: 100,129,368 (GRCm39)	T68S	probably benign	Het
Ugt2b36	T	C	5: 87,237,336 (GRCm39)	N316D	probably benign	Het
Usp4	T	G	9: 108,244,003 (GRCm39)	S247A	probably benign	Het
Utp20	A	T	10: 88,606,613 (GRCm39)	V1653D	probably benign	Het
Vmn1r183	A	G	7: 23,754,250 (GRCm39)	I18V	probably benign	Het
Vmn1r237	A	G	17: 21,534,885 (GRCm39)	M203V	probably damaging	Het
Vmn1r61	A	T	7: 5,613,998 (GRCm39)	F105L	possibly damaging	Het
Zfp462	T	C	4: 55,011,951 (GRCm39)	C158R	probably damaging	Het
Zfyve16	C	G	13: 92,657,637 (GRCm39)	R758P	probably damaging	Het

Other mutations in Pcdhb9

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00157:Pcdhb9	APN	18	37,536,332 (GRCm39)	missense	possibly damaging	0.59
IGL01557:Pcdhb9	APN	18	37,536,100 (GRCm39)	missense	probably damaging	1.00
IGL01716:Pcdhb9	APN	18	37,536,228 (GRCm39)	missense	probably damaging	0.99
IGL01954:Pcdhb9	APN	18	37,534,794 (GRCm39)	missense	probably damaging	1.00
IGL02063:Pcdhb9	APN	18	37,534,810 (GRCm39)	missense	probably benign	0.21
IGL03057:Pcdhb9	APN	18	37,534,330 (GRCm39)	missense	probably benign	0.00
R0140:Pcdhb9	UTSW	18	37,536,014 (GRCm39)	missense	possibly damaging	0.89
R0180:Pcdhb9	UTSW	18	37,535,307 (GRCm39)	missense	probably damaging	1.00
R0349:Pcdhb9	UTSW	18	37,535,632 (GRCm39)	missense	probably damaging	0.99
R0669:Pcdhb9	UTSW	18	37,535,308 (GRCm39)	missense	probably damaging	1.00
R1256:Pcdhb9	UTSW	18	37,536,169 (GRCm39)	missense	possibly damaging	0.94
R1642:Pcdhb9	UTSW	18	37,533,987 (GRCm39)	intron	probably benign
R1678:Pcdhb9	UTSW	18	37,534,682 (GRCm39)	missense	probably damaging	1.00
R1711:Pcdhb9	UTSW	18	37,536,380 (GRCm39)	nonsense	probably null
R1762:Pcdhb9	UTSW	18	37,536,136 (GRCm39)	missense	probably benign	0.00
R1823:Pcdhb9	UTSW	18	37,535,871 (GRCm39)	missense	probably benign	0.14
R1868:Pcdhb9	UTSW	18	37,535,137 (GRCm39)	missense	probably damaging	1.00
R1959:Pcdhb9	UTSW	18	37,536,369 (GRCm39)	missense	probably damaging	1.00
R2446:Pcdhb9	UTSW	18	37,536,340 (GRCm39)	missense	probably damaging	0.99
R2889:Pcdhb9	UTSW	18	37,536,276 (GRCm39)	missense	probably benign	0.06
R2890:Pcdhb9	UTSW	18	37,536,379 (GRCm39)	missense	probably benign	0.23
R3196:Pcdhb9	UTSW	18	37,534,663 (GRCm39)	missense	probably benign	0.02
R3725:Pcdhb9	UTSW	18	37,534,654 (GRCm39)	missense	possibly damaging	0.95
R3726:Pcdhb9	UTSW	18	37,534,654 (GRCm39)	missense	possibly damaging	0.95
R4179:Pcdhb9	UTSW	18	37,534,168 (GRCm39)	missense	probably benign	0.17
R4326:Pcdhb9	UTSW	18	37,534,876 (GRCm39)	missense	probably benign	0.15
R4326:Pcdhb9	UTSW	18	37,534,875 (GRCm39)	missense	probably benign	0.04
R4327:Pcdhb9	UTSW	18	37,534,876 (GRCm39)	missense	probably benign	0.15
R4327:Pcdhb9	UTSW	18	37,534,875 (GRCm39)	missense	probably benign	0.04
R4329:Pcdhb9	UTSW	18	37,534,876 (GRCm39)	missense	probably benign	0.15
R4329:Pcdhb9	UTSW	18	37,534,875 (GRCm39)	missense	probably benign	0.04
R4626:Pcdhb9	UTSW	18	37,535,302 (GRCm39)	missense	probably benign	0.01
R4738:Pcdhb9	UTSW	18	37,536,468 (GRCm39)	missense	probably benign	0.33
R4888:Pcdhb9	UTSW	18	37,536,286 (GRCm39)	missense	probably benign	0.22
R5140:Pcdhb9	UTSW	18	37,534,186 (GRCm39)	missense	probably benign	0.00
R5186:Pcdhb9	UTSW	18	37,534,285 (GRCm39)	missense	probably damaging	1.00
R5502:Pcdhb9	UTSW	18	37,534,656 (GRCm39)	missense	possibly damaging	0.95
R5586:Pcdhb9	UTSW	18	37,534,167 (GRCm39)	missense	probably benign
R5601:Pcdhb9	UTSW	18	37,535,259 (GRCm39)	missense	probably damaging	1.00
R5624:Pcdhb9	UTSW	18	37,534,459 (GRCm39)	missense	probably benign
R5827:Pcdhb9	UTSW	18	37,535,011 (GRCm39)	missense	possibly damaging	0.72
R5829:Pcdhb9	UTSW	18	37,534,942 (GRCm39)	missense	probably damaging	0.97
R5837:Pcdhb9	UTSW	18	37,535,851 (GRCm39)	missense	probably damaging	1.00
R6147:Pcdhb9	UTSW	18	37,535,494 (GRCm39)	missense	possibly damaging	0.95
R6228:Pcdhb9	UTSW	18	37,535,115 (GRCm39)	missense	probably benign	0.00
R6245:Pcdhb9	UTSW	18	37,536,207 (GRCm39)	missense	probably damaging	1.00
R6304:Pcdhb9	UTSW	18	37,534,420 (GRCm39)	missense	probably damaging	0.99
R6542:Pcdhb9	UTSW	18	37,534,642 (GRCm39)	missense	probably damaging	0.99
R6904:Pcdhb9	UTSW	18	37,534,970 (GRCm39)	missense	probably benign	0.01
R7058:Pcdhb9	UTSW	18	37,536,334 (GRCm39)	missense	probably benign	0.35
R7159:Pcdhb9	UTSW	18	37,534,545 (GRCm39)	missense	possibly damaging	0.89
R7258:Pcdhb9	UTSW	18	37,535,167 (GRCm39)	missense	probably damaging	1.00
R7800:Pcdhb9	UTSW	18	37,534,602 (GRCm39)	missense	probably benign	0.01
R8027:Pcdhb9	UTSW	18	37,536,069 (GRCm39)	missense	possibly damaging	0.81
R8141:Pcdhb9	UTSW	18	37,535,361 (GRCm39)	missense	probably damaging	1.00
R8157:Pcdhb9	UTSW	18	37,536,208 (GRCm39)	missense	probably damaging	1.00
R8729:Pcdhb9	UTSW	18	37,535,639 (GRCm39)	missense	possibly damaging	0.88
R8748:Pcdhb9	UTSW	18	37,535,901 (GRCm39)	missense	probably damaging	1.00
R8833:Pcdhb9	UTSW	18	37,534,468 (GRCm39)	missense	probably benign
R9083:Pcdhb9	UTSW	18	37,535,770 (GRCm39)	missense	probably damaging	1.00
R9562:Pcdhb9	UTSW	18	37,534,665 (GRCm39)	missense	probably benign
R9779:Pcdhb9	UTSW	18	37,535,253 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GTGAACAGTCCCTATGAGGTGCAG -3'
(R):5'- CCCATGTCAGAGACCATGATGGTG -3'

Sequencing Primer
(F):5'- AGGTCCTAGAGAGCAGTCCTC -3'
(R):5'- CCCAACTCTGAAGATGCTTATG -3'

Posted On

2013-07-11