Mutagenetix > Incidental Mutation

Incidental Mutation 'R7560:Grik5'

585020

Institutional Source

Beutler Lab

Gene Symbol

Grik5

Ensembl Gene

ENSMUSG00000003378

Gene Name

glutamate receptor, ionotropic, kainate 5 (gamma 2)

Synonyms

KA2, GluRgamma2

MMRRC Submission

045626-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.179) question?

Stock #

R7560 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

24709274-24771771 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 24757951 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Phenylalanine at position 377 (I377F)

Ref Sequence

ENSEMBL: ENSMUSP00000003468 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000003468] [ENSMUST00000205328] [ENSMUST00000206134]

AlphaFold

Q61626

Predicted Effect

probably damaging
Transcript: ENSMUST00000003468
AA Change: I377F

PolyPhen 2 Score 0.988 (Sensitivity: 0.73; Specificity: 0.96)

SMART Domains

Protein: ENSMUSP00000003468
Gene: ENSMUSG00000003378
AA Change: I377F

Domain	Start	End	E-Value	Type
signal peptide	1	19	N/A	INTRINSIC
Pfam:ANF_receptor	40	381	3.4e-64	PFAM
PBPe	416	785	3.7e-122	SMART
Lig_chan-Glu_bd	426	490	1.65e-29	SMART
transmembrane domain	804	823	N/A	INTRINSIC
low complexity region	859	872	N/A	INTRINSIC
low complexity region	893	921	N/A	INTRINSIC
low complexity region	962	973	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000205328

Predicted Effect

probably benign
Transcript: ENSMUST00000206134

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.4%

Validation Efficiency

100% (100/100)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that belongs to the glutamate-gated ionic channel family. Glutamate functions as the major excitatory neurotransmitter in the central nervous system through activation of ligand-gated ion channels and G protein-coupled membrane receptors. The protein encoded by this gene forms functional heteromeric kainate-preferring ionic channels with the subunits encoded by related gene family members. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jul 2014]
PHENOTYPE: Mice homozygous for one allele display abnormal hippocampal synapse function. Mice homozygous for a second allele display decreased thermal nociception, increased startle response and increased susceptibility to pharmacologically induced seizures. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 101 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acot12	A	G	13: 91,932,510 (GRCm39)	D502G	probably benign	Het
Adrb1	T	C	19: 56,711,120 (GRCm39)	V106A	probably damaging	Het
Ahcyl2	G	T	6: 29,886,139 (GRCm39)	G352W	probably damaging	Het
Ahnak2	T	G	12: 112,745,851 (GRCm39)	D446A		Het
Arhgap42	T	C	9: 9,035,532 (GRCm39)	D270G	probably benign	Het
Atp2a1	A	G	7: 126,058,828 (GRCm39)	V129A	possibly damaging	Het
B9d2	G	A	7: 25,380,784 (GRCm39)		probably benign	Het
Bace1	A	T	9: 45,767,437 (GRCm39)	I207F	possibly damaging	Het
Blnk	T	A	19: 40,940,834 (GRCm39)	I190F	possibly damaging	Het
Bmp7	C	T	2: 172,781,757 (GRCm39)	E36K	possibly damaging	Het
Brsk2	A	G	7: 141,554,597 (GRCm39)	E654G	probably benign	Het
Cacna2d3	T	C	14: 28,780,378 (GRCm39)	H661R	probably benign	Het
Cdh4	T	C	2: 179,532,695 (GRCm39)	V719A	probably benign	Het
Cdkn2d	G	T	9: 21,200,540 (GRCm39)	P77H	probably damaging	Het
Chd3	A	G	11: 69,247,096 (GRCm39)	V1024A	probably damaging	Het
Chsy1	T	A	7: 65,820,992 (GRCm39)	M409K	possibly damaging	Het
Chsy1	T	C	7: 65,821,319 (GRCm39)	L518P	probably damaging	Het
Cic	G	A	7: 24,972,278 (GRCm39)	V670M	probably damaging	Het
Clock	A	T	5: 76,390,738 (GRCm39)		probably null	Het
Coro1a	C	A	7: 126,302,306 (GRCm39)	V14L	probably damaging	Het
Ctcfl	C	A	2: 172,960,199 (GRCm39)	C128F	probably damaging	Het
Cyb5b	A	G	8: 107,896,491 (GRCm39)	T71A	probably damaging	Het
Cyp2c40	C	G	19: 39,795,658 (GRCm39)	V174L	possibly damaging	Het
D630045J12Rik	T	A	6: 38,173,562 (GRCm39)	Q202L	possibly damaging	Het
Dgkz	T	C	2: 91,773,160 (GRCm39)		probably benign	Het
Dlgap2	T	C	8: 14,872,697 (GRCm39)		probably null	Het
Dnah1	T	C	14: 31,026,940 (GRCm39)	I695V	probably benign	Het
Dst	T	A	1: 34,221,532 (GRCm39)	S2445R	possibly damaging	Het
Elob	T	C	17: 24,043,950 (GRCm39)	D83G	probably benign	Het
Elp4	T	A	2: 105,624,933 (GRCm39)	D320V	probably damaging	Het
Enpp5	G	A	17: 44,396,155 (GRCm39)	G356S	probably damaging	Het
Etfdh	T	C	3: 79,530,886 (GRCm39)	Y45C	probably damaging	Het
Exph5	A	G	9: 53,287,073 (GRCm39)	I1385V	probably benign	Het
Fat3	A	T	9: 15,908,138 (GRCm39)	D2621E	probably damaging	Het
Fbxl6	G	T	15: 76,422,669 (GRCm39)	A83D	probably benign	Het
Fmo2	A	G	1: 162,716,318 (GRCm39)	Y90H	probably damaging	Het
Fzd4	T	A	7: 89,056,761 (GRCm39)	Y269*	probably null	Het
Havcr2	C	A	11: 46,349,889 (GRCm39)	P137Q	probably damaging	Het
Hectd4	A	G	5: 121,392,405 (GRCm39)	N223S	possibly damaging	Het
Hmcn2	A	G	2: 31,347,185 (GRCm39)	S4792G	probably benign	Het
Hps3	T	G	3: 20,084,616 (GRCm39)	I191L	probably benign	Het
Ica1l	T	A	1: 60,049,369 (GRCm39)	K195*	probably null	Het
Idh2	TCCCAGGGCC	TCC	7: 79,748,079 (GRCm39)		probably null	Het
Ift140	A	G	17: 25,311,315 (GRCm39)	D1170G	probably benign	Het
Igflr1	T	C	7: 30,266,776 (GRCm39)	F208S	possibly damaging	Het
Kcnma1	T	C	14: 23,580,310 (GRCm39)	T313A	probably benign	Het
Krt6a	T	A	15: 101,598,994 (GRCm39)	I524F	unknown	Het
Lce1d	G	T	3: 92,593,148 (GRCm39)	H88Q	unknown	Het
Lrmda	A	G	14: 22,878,770 (GRCm39)	E177G	probably benign	Het
Lrrn3	T	A	12: 41,502,712 (GRCm39)	N535I	possibly damaging	Het
Map2k4	T	A	11: 65,666,583 (GRCm39)	I40L	unknown	Het
Map7d1	A	G	4: 126,130,429 (GRCm39)	L459P	probably damaging	Het
Mipol1	A	T	12: 57,352,859 (GRCm39)	N66I	possibly damaging	Het
Mycn	A	C	12: 12,990,292 (GRCm39)	F35V	probably benign	Het
Mzt2	A	C	16: 15,680,669 (GRCm39)	M40R	possibly damaging	Het
N4bp2	T	G	5: 65,948,458 (GRCm39)	L363V	probably damaging	Het
Nfat5	T	A	8: 108,097,221 (GRCm39)	M1532K	probably benign	Het
Notch1	G	A	2: 26,350,177 (GRCm39)	T2321M	probably benign	Het
Nr1h4	T	C	10: 89,334,123 (GRCm39)	D89G	probably benign	Het
Nsun4	G	A	4: 115,908,691 (GRCm39)	T623I	possibly damaging	Het
Nup155	T	C	15: 8,184,531 (GRCm39)	S1309P	probably benign	Het
Or4e1	T	C	14: 52,700,851 (GRCm39)	N205S	probably damaging	Het
Or51f5	T	C	7: 102,430,889 (GRCm39)	S69P	probably damaging	Het
Or8h10	T	C	2: 86,809,122 (GRCm39)	Y6C	probably benign	Het
Pcsk5	A	G	19: 17,814,336 (GRCm39)	F61L	probably benign	Het
Phrf1	A	T	7: 140,811,138 (GRCm39)		probably null	Het
Pkd1	G	A	17: 24,792,605 (GRCm39)	E1431K	probably benign	Het
Pkd2	T	A	5: 104,628,219 (GRCm39)	I431N	probably damaging	Het
Plcb2	A	G	2: 118,546,124 (GRCm39)	L557P	probably damaging	Het
Poteg	A	G	8: 27,984,988 (GRCm39)	N449S	probably benign	Het
Ppargc1b	C	A	18: 61,445,281 (GRCm39)	G192W	probably damaging	Het
Rab13	T	C	3: 90,132,206 (GRCm39)	S178P	probably benign	Het
Ralgds	A	G	2: 28,437,607 (GRCm39)	D571G	probably damaging	Het
Ror2	A	G	13: 53,264,849 (GRCm39)	S748P	probably benign	Het
Sart1	A	T	19: 5,434,905 (GRCm39)	L167Q	probably damaging	Het
Septin12	A	G	16: 4,810,055 (GRCm39)	V160A	possibly damaging	Het
Sgo1	T	C	17: 53,986,295 (GRCm39)	S299G	probably benign	Het
Shoc1	T	C	4: 59,076,140 (GRCm39)	N601S	possibly damaging	Het
Slc35b4	T	A	6: 34,140,296 (GRCm39)	D152V	probably benign	Het
Spata31h1	T	C	10: 82,120,449 (GRCm39)	Y4187C	probably damaging	Het
Specc1	T	A	11: 62,019,235 (GRCm39)		probably null	Het
Synj1	G	A	16: 90,737,371 (GRCm39)	T1308I	probably benign	Het
Thap12	T	G	7: 98,359,438 (GRCm39)	L106V	probably damaging	Het
Togaram1	T	C	12: 65,057,916 (GRCm39)	M1501T	possibly damaging	Het
Top2a	G	T	11: 98,891,663 (GRCm39)	N1153K	probably benign	Het
Trpm5	A	G	7: 142,634,723 (GRCm39)	L658P	probably damaging	Het
Ttc21b	G	A	2: 66,047,548 (GRCm39)	A849V	possibly damaging	Het
Vcf1	C	T	11: 113,554,215 (GRCm39)	G160D	probably damaging	Het
Vmn1r80	A	T	7: 11,927,750 (GRCm39)	I287F	probably damaging	Het
Vmn1r87	T	C	7: 12,865,745 (GRCm39)	S181G	probably damaging	Het
Vmn2r71	A	T	7: 85,273,115 (GRCm39)	H643L	probably benign	Het
Washc5	G	A	15: 59,238,041 (GRCm39)	R228C	probably damaging	Het
Wdr72	T	C	9: 74,117,408 (GRCm39)	S719P	probably damaging	Het
Xrcc3	G	T	12: 111,774,336 (GRCm39)	D164E	probably benign	Het
Zc2hc1b	G	A	10: 13,044,529 (GRCm39)	R45C	probably damaging	Het
Zfp335	A	G	2: 164,737,912 (GRCm39)	Y900H	probably damaging	Het
Zfp512b	G	A	2: 181,228,875 (GRCm39)	R697C	probably damaging	Het
Zfp60	T	C	7: 27,448,561 (GRCm39)	Y410H	probably damaging	Het
Zfp60	T	A	7: 27,448,696 (GRCm39)	C455S	probably damaging	Het
Zfp605	C	T	5: 110,275,157 (GRCm39)	Q92*	probably null	Het
Zfp64	C	T	2: 168,767,585 (GRCm39)	D676N	probably damaging	Het

Other mutations in Grik5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00788:Grik5	APN	7	24,764,818 (GRCm39)	missense	probably damaging	1.00
IGL00974:Grik5	APN	7	24,713,310 (GRCm39)	missense	probably damaging	1.00
IGL01941:Grik5	APN	7	24,764,607 (GRCm39)	missense	probably damaging	1.00
IGL02642:Grik5	APN	7	24,758,408 (GRCm39)	missense	possibly damaging	0.51
IGL03177:Grik5	APN	7	24,714,879 (GRCm39)	missense	probably damaging	1.00
IGL03402:Grik5	APN	7	24,714,894 (GRCm39)	missense	probably damaging	1.00
Griffin	UTSW	7	24,758,502 (GRCm39)	missense	possibly damaging	0.78
G1citation:Grik5	UTSW	7	24,745,780 (GRCm39)	missense	possibly damaging	0.46
PIT4453001:Grik5	UTSW	7	24,710,119 (GRCm39)	missense	probably damaging	0.99
R0077:Grik5	UTSW	7	24,722,805 (GRCm39)	missense	probably damaging	1.00
R0412:Grik5	UTSW	7	24,713,099 (GRCm39)	missense	possibly damaging	0.59
R0427:Grik5	UTSW	7	24,757,923 (GRCm39)	missense	probably benign	0.34
R1191:Grik5	UTSW	7	24,757,750 (GRCm39)	nonsense	probably null
R1830:Grik5	UTSW	7	24,745,726 (GRCm39)	missense	possibly damaging	0.94
R2072:Grik5	UTSW	7	24,714,738 (GRCm39)	missense	possibly damaging	0.92
R2369:Grik5	UTSW	7	24,757,962 (GRCm39)	missense	probably damaging	1.00
R3410:Grik5	UTSW	7	24,762,397 (GRCm39)	missense	probably benign	0.04
R3411:Grik5	UTSW	7	24,762,397 (GRCm39)	missense	probably benign	0.04
R3615:Grik5	UTSW	7	24,721,996 (GRCm39)	missense	probably benign	0.37
R3616:Grik5	UTSW	7	24,721,996 (GRCm39)	missense	probably benign	0.37
R4600:Grik5	UTSW	7	24,767,489 (GRCm39)	missense	probably damaging	0.99
R4658:Grik5	UTSW	7	24,760,152 (GRCm39)	splice site	probably benign
R4735:Grik5	UTSW	7	24,757,713 (GRCm39)	missense	probably damaging	1.00
R4810:Grik5	UTSW	7	24,714,922 (GRCm39)	missense	probably damaging	0.98
R5113:Grik5	UTSW	7	24,714,952 (GRCm39)	missense	probably damaging	1.00
R5120:Grik5	UTSW	7	24,710,065 (GRCm39)	missense	probably damaging	1.00
R5132:Grik5	UTSW	7	24,764,629 (GRCm39)	missense	probably benign	0.02
R5173:Grik5	UTSW	7	24,762,319 (GRCm39)	missense	possibly damaging	0.76
R5186:Grik5	UTSW	7	24,715,244 (GRCm39)	missense	probably damaging	1.00
R5239:Grik5	UTSW	7	24,764,895 (GRCm39)	missense	probably damaging	1.00
R5935:Grik5	UTSW	7	24,758,502 (GRCm39)	missense	possibly damaging	0.78
R6335:Grik5	UTSW	7	24,713,019 (GRCm39)	missense	probably benign
R6609:Grik5	UTSW	7	24,714,951 (GRCm39)	nonsense	probably null
R6760:Grik5	UTSW	7	24,758,364 (GRCm39)	critical splice donor site	probably null
R6820:Grik5	UTSW	7	24,745,780 (GRCm39)	missense	possibly damaging	0.46
R6821:Grik5	UTSW	7	24,745,780 (GRCm39)	missense	possibly damaging	0.46
R6822:Grik5	UTSW	7	24,745,780 (GRCm39)	missense	possibly damaging	0.46
R6824:Grik5	UTSW	7	24,745,780 (GRCm39)	missense	possibly damaging	0.46
R7173:Grik5	UTSW	7	24,767,587 (GRCm39)	missense	probably damaging	1.00
R7230:Grik5	UTSW	7	24,722,495 (GRCm39)	missense	probably damaging	1.00
R7555:Grik5	UTSW	7	24,760,022 (GRCm39)	missense	probably benign
R7571:Grik5	UTSW	7	24,713,310 (GRCm39)	missense	possibly damaging	0.87
R8228:Grik5	UTSW	7	24,745,735 (GRCm39)	missense	possibly damaging	0.93
R8228:Grik5	UTSW	7	24,709,933 (GRCm39)	missense	probably damaging	1.00
R8681:Grik5	UTSW	7	24,709,897 (GRCm39)	missense	probably benign	0.06
R8879:Grik5	UTSW	7	24,722,489 (GRCm39)	missense	possibly damaging	0.95
R8933:Grik5	UTSW	7	24,722,743 (GRCm39)	missense	probably benign	0.11
R9129:Grik5	UTSW	7	24,767,429 (GRCm39)	splice site	probably benign
R9130:Grik5	UTSW	7	24,767,429 (GRCm39)	splice site	probably benign
R9154:Grik5	UTSW	7	24,758,403 (GRCm39)	missense	probably damaging	1.00
R9317:Grik5	UTSW	7	24,745,660 (GRCm39)	missense	probably damaging	0.99
R9355:Grik5	UTSW	7	24,767,597 (GRCm39)	missense	possibly damaging	0.82
R9406:Grik5	UTSW	7	24,757,969 (GRCm39)	missense	probably benign	0.00
X0017:Grik5	UTSW	7	24,760,013 (GRCm39)	missense	probably damaging	1.00
Z1176:Grik5	UTSW	7	24,713,229 (GRCm39)	missense	probably damaging	0.98
Z1177:Grik5	UTSW	7	24,715,250 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACAGGTTGATGTCCAGGGTG -3'
(R):5'- TGTCTGACCATGCCACTGTC -3'

Sequencing Primer
(F):5'- CCAGGGTGGTGGCATTC -3'
(R):5'- ACCATGCCACTGTCCCTGTG -3'

Posted On

2019-10-17