Incidental Mutation 'R0619:Rnf6'
ID 58527
Institutional Source Beutler Lab
Gene Symbol Rnf6
Ensembl Gene ENSMUSG00000029634
Gene Name ring finger protein (C3H2C3 type) 6
Synonyms 5730419H05Rik, 1200013I08Rik
MMRRC Submission 038808-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.778) question?
Stock # R0619 (G1)
Quality Score 225
Status Not validated
Chromosome 5
Chromosomal Location 146146003-146158267 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to A at 146147531 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Arginine to Cysteine at position 496 (R496C)
Ref Sequence ENSEMBL: ENSMUSP00000128774 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000067837] [ENSMUST00000159074] [ENSMUST00000161331] [ENSMUST00000161574] [ENSMUST00000161859] [ENSMUST00000169407]
AlphaFold Q9DBU5
Predicted Effect possibly damaging
Transcript: ENSMUST00000067837
AA Change: R496C

PolyPhen 2 Score 0.585 (Sensitivity: 0.88; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000067559
Gene: ENSMUSG00000029634
AA Change: R496C

DomainStartEndE-ValueType
low complexity region 4 16 N/A INTRINSIC
low complexity region 79 95 N/A INTRINSIC
low complexity region 187 215 N/A INTRINSIC
low complexity region 513 530 N/A INTRINSIC
RING 614 654 6.68e-6 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000159074
SMART Domains Protein: ENSMUSP00000123926
Gene: ENSMUSG00000029634

DomainStartEndE-ValueType
low complexity region 15 27 N/A INTRINSIC
low complexity region 90 106 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000161331
SMART Domains Protein: ENSMUSP00000125611
Gene: ENSMUSG00000029634

DomainStartEndE-ValueType
low complexity region 4 16 N/A INTRINSIC
low complexity region 79 95 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000161574
SMART Domains Protein: ENSMUSP00000123730
Gene: ENSMUSG00000029634

DomainStartEndE-ValueType
low complexity region 15 27 N/A INTRINSIC
low complexity region 90 106 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000161859
AA Change: R496C

PolyPhen 2 Score 0.585 (Sensitivity: 0.88; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000124293
Gene: ENSMUSG00000029634
AA Change: R496C

DomainStartEndE-ValueType
low complexity region 4 16 N/A INTRINSIC
low complexity region 79 95 N/A INTRINSIC
low complexity region 187 215 N/A INTRINSIC
low complexity region 513 530 N/A INTRINSIC
RING 614 654 6.68e-6 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000162219
SMART Domains Protein: ENSMUSP00000123708
Gene: ENSMUSG00000029634

DomainStartEndE-ValueType
low complexity region 49 65 N/A INTRINSIC
low complexity region 157 185 N/A INTRINSIC
Predicted Effect possibly damaging
Transcript: ENSMUST00000169407
AA Change: R496C

PolyPhen 2 Score 0.585 (Sensitivity: 0.88; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000128774
Gene: ENSMUSG00000029634
AA Change: R496C

DomainStartEndE-ValueType
low complexity region 4 16 N/A INTRINSIC
low complexity region 79 95 N/A INTRINSIC
low complexity region 187 215 N/A INTRINSIC
low complexity region 513 530 N/A INTRINSIC
RING 614 654 6.68e-6 SMART
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 99.0%
  • 10x: 97.8%
  • 20x: 96.1%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains a RING-H2 finger motif. Deletions and mutations in this gene were detected in esophageal squamous cell carcinoma (ESCC), suggesting that this protein may be a potential tumor suppressor. Studies of the mouse counterpart suggested a role of this protein in the transcription regulation that controls germinal differentiation. Multiple alternatively spliced transcript variants encoding the same protein are observed. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 55 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adad2 G A 8: 120,339,739 (GRCm39) D74N probably benign Het
Adgre4 T A 17: 56,127,679 (GRCm39) V573D possibly damaging Het
Ak7 A G 12: 105,699,770 (GRCm39) K230E probably damaging Het
Amdhd2 T C 17: 24,375,562 (GRCm39) D375G possibly damaging Het
Anpep T C 7: 79,490,757 (GRCm39) E253G probably benign Het
Bbs7 A G 3: 36,661,725 (GRCm39) L158S probably benign Het
Bdp1 T C 13: 100,174,366 (GRCm39) T2057A probably benign Het
C2 G T 17: 35,091,479 (GRCm39) H61Q probably damaging Het
Ccdc18 A G 5: 108,328,282 (GRCm39) K661E probably benign Het
Cdh23 C T 10: 60,269,556 (GRCm39) V655I probably damaging Het
Cep78 T C 19: 15,956,226 (GRCm39) T238A probably damaging Het
Ces2a T A 8: 105,462,742 (GRCm39) N110K probably benign Het
Crat T C 2: 30,299,996 (GRCm39) D128G probably benign Het
Dclre1a A T 19: 56,533,841 (GRCm39) M233K probably benign Het
Dsg4 T C 18: 20,594,416 (GRCm39) V515A probably benign Het
Fer1l6 T C 15: 58,534,784 (GRCm39) probably null Het
Fryl T C 5: 73,226,074 (GRCm39) D1863G probably benign Het
Fsip2 T A 2: 82,774,484 (GRCm39) L57Q probably damaging Het
Gnb4 C T 3: 32,645,356 (GRCm39) V112I probably benign Het
Iqsec1 T C 6: 90,647,388 (GRCm39) probably null Het
Kcnn3 A C 3: 89,559,337 (GRCm39) T536P probably damaging Het
Kctd3 T C 1: 188,710,840 (GRCm39) D441G probably damaging Het
Kifc3 G A 8: 95,829,293 (GRCm39) T528M probably benign Het
Kmt2c G A 5: 25,503,914 (GRCm39) T3798I probably benign Het
Map1a T A 2: 121,135,736 (GRCm39) M1946K probably damaging Het
Mfhas1 T A 8: 36,057,829 (GRCm39) V768E probably benign Het
Mroh8 C A 2: 157,107,001 (GRCm39) V223F possibly damaging Het
Mss51 A T 14: 20,537,641 (GRCm39) V30E probably benign Het
Mtmr10 G A 7: 63,970,961 (GRCm39) R392H probably benign Het
Mup3 T C 4: 62,004,198 (GRCm39) N105S probably benign Het
Myh7b T C 2: 155,453,642 (GRCm39) M22T probably benign Het
Or1o2 T A 17: 37,543,046 (GRCm39) I72F possibly damaging Het
Or2aj5 T A 16: 19,425,022 (GRCm39) Y132F probably damaging Het
Or5m9 T A 2: 85,877,655 (GRCm39) Y276* probably null Het
Os9 A G 10: 126,956,860 (GRCm39) I43T probably damaging Het
Pkhd1l1 T C 15: 44,347,234 (GRCm39) L200P probably damaging Het
Ptpru C T 4: 131,548,198 (GRCm39) V100M possibly damaging Het
Rsad1 C T 11: 94,433,465 (GRCm39) R407Q probably damaging Het
Rspo3 T C 10: 29,380,633 (GRCm39) D127G probably damaging Het
Sbf2 T A 7: 109,909,469 (GRCm39) T1760S possibly damaging Het
Sh2d3c T A 2: 32,643,037 (GRCm39) V588E probably damaging Het
Siglech A T 7: 55,418,910 (GRCm39) T238S probably benign Het
Slc15a2 T A 16: 36,579,669 (GRCm39) N328I probably damaging Het
Slc16a11 G T 11: 70,105,858 (GRCm39) G94C probably damaging Het
Stub1 T C 17: 26,050,296 (GRCm39) probably null Het
Tacc2 T A 7: 130,318,483 (GRCm39) V40D probably damaging Het
Tagln3 C A 16: 45,544,635 (GRCm39) R12L probably damaging Het
Trappc14 A G 5: 138,262,088 (GRCm39) probably benign Het
Tsen54 A G 11: 115,705,890 (GRCm39) E69G probably damaging Het
Tsks A G 7: 44,600,258 (GRCm39) E150G probably damaging Het
Ubap2l A C 3: 89,924,527 (GRCm39) V680G probably benign Het
Usp16 A T 16: 87,269,052 (GRCm39) H315L probably benign Het
Vav2 A G 2: 27,186,133 (GRCm39) probably null Het
Zfc3h1 T C 10: 115,256,715 (GRCm39) F1562L possibly damaging Het
Zfp764 C A 7: 127,005,713 (GRCm39) V22L probably benign Het
Other mutations in Rnf6
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00706:Rnf6 APN 5 146,148,715 (GRCm39) missense possibly damaging 0.86
IGL01432:Rnf6 APN 5 146,152,931 (GRCm39) missense possibly damaging 0.61
IGL01722:Rnf6 APN 5 146,147,036 (GRCm39) missense probably benign
IGL01866:Rnf6 APN 5 146,147,717 (GRCm39) missense probably damaging 0.99
R0141:Rnf6 UTSW 5 146,148,645 (GRCm39) missense possibly damaging 0.95
R0551:Rnf6 UTSW 5 146,148,205 (GRCm39) missense possibly damaging 0.65
R0685:Rnf6 UTSW 5 146,148,468 (GRCm39) missense probably damaging 0.99
R1363:Rnf6 UTSW 5 146,148,369 (GRCm39) missense probably benign
R1387:Rnf6 UTSW 5 146,148,055 (GRCm39) missense probably benign 0.00
R1671:Rnf6 UTSW 5 146,147,998 (GRCm39) nonsense probably null
R2047:Rnf6 UTSW 5 146,148,674 (GRCm39) missense probably damaging 0.99
R2074:Rnf6 UTSW 5 146,147,716 (GRCm39) missense probably damaging 0.98
R2107:Rnf6 UTSW 5 146,148,091 (GRCm39) missense probably damaging 0.99
R2871:Rnf6 UTSW 5 146,147,215 (GRCm39) missense probably benign 0.07
R2871:Rnf6 UTSW 5 146,147,215 (GRCm39) missense probably benign 0.07
R2873:Rnf6 UTSW 5 146,147,215 (GRCm39) missense probably benign 0.07
R2874:Rnf6 UTSW 5 146,147,215 (GRCm39) missense probably benign 0.07
R4361:Rnf6 UTSW 5 146,148,089 (GRCm39) missense probably damaging 1.00
R5421:Rnf6 UTSW 5 146,147,339 (GRCm39) missense probably benign 0.06
R5437:Rnf6 UTSW 5 146,147,090 (GRCm39) missense probably damaging 1.00
R5614:Rnf6 UTSW 5 146,154,910 (GRCm39) splice site probably null
R5848:Rnf6 UTSW 5 146,147,959 (GRCm39) missense probably benign 0.25
R7515:Rnf6 UTSW 5 146,148,602 (GRCm39) missense probably damaging 1.00
R7589:Rnf6 UTSW 5 146,148,239 (GRCm39) missense possibly damaging 0.92
R7767:Rnf6 UTSW 5 146,147,987 (GRCm39) nonsense probably null
R7767:Rnf6 UTSW 5 146,147,986 (GRCm39) missense probably damaging 0.98
R8155:Rnf6 UTSW 5 146,147,815 (GRCm39) missense probably damaging 0.96
R8205:Rnf6 UTSW 5 146,147,714 (GRCm39) missense probably damaging 0.98
R8302:Rnf6 UTSW 5 146,148,334 (GRCm39) missense probably benign
R8433:Rnf6 UTSW 5 146,148,088 (GRCm39) missense probably damaging 0.96
R9561:Rnf6 UTSW 5 146,147,936 (GRCm39) missense probably benign 0.00
R9732:Rnf6 UTSW 5 146,152,931 (GRCm39) missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- ACGTAGTCACTGATGCACACGC -3'
(R):5'- ACGTGAGCACCATCACAGTTCC -3'

Sequencing Primer
(F):5'- AGAATGGGTAATGTTCCAGCCTC -3'
(R):5'- CTCTTCGCAGGATTTCTGAGAATG -3'
Posted On 2013-07-11