Mutagenetix > Incidental Mutation

Incidental Mutation 'R0239:Orc1'

59209

Institutional Source

Beutler Lab

Gene Symbol

Orc1

Ensembl Gene

ENSMUSG00000028587

Gene Name

origin recognition complex, subunit 1

Synonyms

MmORC1, Orc1l

MMRRC Submission

038477-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R0239 (G1)

Quality Score

202

Status

Validated

Chromosome

Chromosomal Location

108436651-108472030 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to C at 108452843 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000099805 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000102744]

AlphaFold

Q9Z1N2

PDB Structure

Structure of free mouse ORC1 BAH domain [X-RAY DIFFRACTION]
Structure of mouse ORC1 BAH domain bound to H4K20me2 [X-RAY DIFFRACTION]

Predicted Effect

probably null
Transcript: ENSMUST00000102744

SMART Domains

Protein: ENSMUSP00000099805
Gene: ENSMUSG00000028587

Domain	Start	End	E-Value	Type
BAH	44	170	1.88e-31	SMART
low complexity region	394	417	N/A	INTRINSIC
AAA	505	656	1e-7	SMART
Cdc6_C	757	837	5.45e-12	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000126668

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130162

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139772

Meta Mutation Damage Score

0.9490

Coding Region Coverage

1x: 99.4%
3x: 99.0%
10x: 97.9%
20x: 96.2%

Validation Efficiency

98% (81/83)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The origin recognition complex (ORC) is a highly conserved six subunits protein complex essential for the initiation of the DNA replication in eukaryotic cells. Studies in yeast demonstrated that ORC binds specifically to origins of replication and serves as a platform for the assembly of additional initiation factors such as Cdc6 and Mcm proteins. The protein encoded by this gene is the largest subunit of the ORC complex. While other ORC subunits are stable throughout the cell cycle, the levels of this protein vary during the cell cycle, which has been shown to be controlled by ubiquitin-mediated proteolysis after initiation of DNA replication. This protein is found to be selectively phosphorylated during mitosis. It is also reported to interact with MYST histone acetyltransferase 2 (MyST2/HBO1), a protein involved in control of transcription silencing. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jun 2010]

Allele List at MGI

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adra1d	C	A	2: 131,388,134 (GRCm39)	V474F	probably benign	Het
Alg8	A	T	7: 97,032,891 (GRCm39)		probably null	Het
Ash1l	A	G	3: 88,974,529 (GRCm39)	D2618G	possibly damaging	Het
Atp6v1c2	C	A	12: 17,344,676 (GRCm39)		probably null	Het
Cacna1d	A	G	14: 29,845,453 (GRCm39)	V572A	probably benign	Het
Camta1	A	G	4: 151,228,187 (GRCm39)	W882R	probably damaging	Het
Cd72	A	G	4: 43,453,163 (GRCm39)	V91A	probably benign	Het
Cdh12	T	C	15: 21,586,493 (GRCm39)	W771R	probably damaging	Het
Cdx2	G	T	5: 147,240,097 (GRCm39)	T193K	probably damaging	Het
Cfap70	A	C	14: 20,498,673 (GRCm39)	S5A	probably benign	Het
Chmp7	A	G	14: 69,958,446 (GRCm39)	V241A	probably damaging	Het
Col4a1	C	T	8: 11,268,780 (GRCm39)		probably benign	Het
D3Ertd751e	A	G	3: 41,708,313 (GRCm39)	Y150C	probably damaging	Het
Depdc5	T	C	5: 33,100,584 (GRCm39)	S832P	probably damaging	Het
Dnhd1	A	G	7: 105,370,738 (GRCm39)	S4673G	probably benign	Het
Dock4	G	T	12: 40,787,539 (GRCm39)	S818I	probably damaging	Het
Dysf	C	T	6: 84,041,461 (GRCm39)	Q156*	probably null	Het
Elp1	C	A	4: 56,784,596 (GRCm39)	V466L	probably benign	Het
Espnl	T	C	1: 91,250,009 (GRCm39)	V52A	probably damaging	Het
Flcn	T	C	11: 59,691,902 (GRCm39)	N249S	probably benign	Het
Gemin6	C	A	17: 80,533,139 (GRCm39)	A24D	probably damaging	Het
Gm5773	A	G	3: 93,681,339 (GRCm39)	H337R	probably benign	Het
Greb1l	C	T	18: 10,458,567 (GRCm39)		probably benign	Het
Hal	T	C	10: 93,339,344 (GRCm39)	S478P	possibly damaging	Het
Hectd1	T	A	12: 51,816,101 (GRCm39)	M1324L	possibly damaging	Het
Hyal5	T	A	6: 24,876,343 (GRCm39)	L72Q	probably damaging	Het
Ift140	C	A	17: 25,264,497 (GRCm39)	C557*	probably null	Het
Il4ra	T	C	7: 125,174,371 (GRCm39)		probably benign	Het
Ipo9	A	G	1: 135,332,074 (GRCm39)		probably benign	Het
Irag2	G	A	6: 145,117,704 (GRCm39)		probably benign	Het
Kbtbd3	G	T	9: 4,330,144 (GRCm39)	V173L	possibly damaging	Het
Kif14	A	G	1: 136,455,131 (GRCm39)	E1551G	probably damaging	Het
Klc1	A	G	12: 111,751,758 (GRCm39)		probably benign	Het
Krt17	G	A	11: 100,151,704 (GRCm39)	R30*	probably null	Het
Lamb3	A	T	1: 193,003,361 (GRCm39)	D100V	probably damaging	Het
Map2	A	G	1: 66,455,265 (GRCm39)	D1385G	probably damaging	Het
Mettl25	C	T	10: 105,662,386 (GRCm39)	V195I	probably damaging	Het
Micu2	G	A	14: 58,154,835 (GRCm39)		probably benign	Het
Mrrf	T	C	2: 36,067,293 (GRCm39)		probably benign	Het
Myh8	A	G	11: 67,192,518 (GRCm39)	T1466A	probably benign	Het
Myo3b	T	A	2: 69,935,769 (GRCm39)	C61S	probably benign	Het
Nacc2	T	G	2: 25,952,273 (GRCm39)	N361T	probably damaging	Het
Nf1	A	T	11: 79,309,400 (GRCm39)	K438M	possibly damaging	Het
Nipal4	A	G	11: 46,041,268 (GRCm39)	V309A	possibly damaging	Het
Nomo1	T	C	7: 45,729,018 (GRCm39)		probably null	Het
Nubp2	T	C	17: 25,103,445 (GRCm39)	E144G	probably damaging	Het
Nwd2	A	T	5: 63,957,467 (GRCm39)	I266F	probably benign	Het
Or12e7	T	C	2: 87,288,381 (GRCm39)	F291L	probably benign	Het
Or2ag1b	A	G	7: 106,288,462 (GRCm39)	Y159H	probably benign	Het
Or52s1	G	A	7: 102,861,933 (GRCm39)	V289M	possibly damaging	Het
Otogl	T	A	10: 107,642,557 (GRCm39)	N1291I	probably damaging	Het
Pah	C	T	10: 87,403,143 (GRCm39)	P173S	possibly damaging	Het
Pga5	A	G	19: 10,646,817 (GRCm39)	Y305H	probably damaging	Het
Plekha4	A	G	7: 45,181,782 (GRCm39)	H62R	probably damaging	Het
Plxnd1	G	T	6: 115,945,754 (GRCm39)	D906E	probably benign	Het
Ppfia4	T	C	1: 134,256,927 (GRCm39)	E98G	possibly damaging	Het
Ptk2	A	T	15: 73,215,132 (GRCm39)		probably null	Het
Pzp	C	T	6: 128,466,119 (GRCm39)		probably benign	Het
Raet1c	C	A	10: 22,056,761 (GRCm39)	H112Q	possibly damaging	Het
Scai	T	A	2: 38,965,054 (GRCm39)	I597F	probably benign	Het
Scgb1b2	T	A	7: 30,991,155 (GRCm39)		probably benign	Het
Sec31b	G	A	19: 44,513,908 (GRCm39)		probably benign	Het
Sirpd	A	G	3: 15,361,661 (GRCm39)	L163P	probably damaging	Het
Slc35c2	C	T	2: 165,122,757 (GRCm39)	G176S	probably damaging	Het
Slc35f4	A	T	14: 49,541,713 (GRCm39)	I347N	possibly damaging	Het
Slc49a3	G	T	5: 108,591,882 (GRCm39)		probably benign	Het
Slc52a3	T	C	2: 151,850,076 (GRCm39)	*461Q	probably null	Het
Slc6a1	G	A	6: 114,279,761 (GRCm39)	V142I	probably benign	Het
Tbc1d31	C	A	15: 57,804,149 (GRCm39)	T388N	probably benign	Het
Tmem131	T	C	1: 36,867,131 (GRCm39)		probably benign	Het
Tmem63c	T	C	12: 87,122,413 (GRCm39)	W404R	probably damaging	Het
Tmem79	A	G	3: 88,240,628 (GRCm39)	S107P	probably benign	Het
Trip11	C	T	12: 101,850,987 (GRCm39)	E741K	probably damaging	Het
Trpm5	G	T	7: 142,636,695 (GRCm39)	T414N	probably damaging	Het
Tsnaxip1	T	A	8: 106,571,120 (GRCm39)	I660N	possibly damaging	Het
Ube2q2	T	C	9: 55,070,291 (GRCm39)	S78P	probably damaging	Het
Vac14	A	T	8: 111,362,007 (GRCm39)		probably null	Het
Vps51	G	T	19: 6,121,467 (GRCm39)	S185*	probably null	Het
Zfp11	C	T	5: 129,735,302 (GRCm39)	G53E	possibly damaging	Het
Zfp532	A	T	18: 65,816,056 (GRCm39)	I810F	possibly damaging	Het
Zfp599	C	T	9: 22,161,055 (GRCm39)	C370Y	probably damaging	Het

Other mutations in Orc1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00333:Orc1	APN	4	108,452,522 (GRCm39)	splice site	probably benign
IGL00709:Orc1	APN	4	108,447,975 (GRCm39)	critical splice donor site	probably null
IGL01124:Orc1	APN	4	108,445,984 (GRCm39)	splice site	probably benign
IGL01514:Orc1	APN	4	108,459,249 (GRCm39)	missense	probably damaging	0.97
IGL01677:Orc1	APN	4	108,461,782 (GRCm39)	missense	probably damaging	1.00
IGL01782:Orc1	APN	4	108,463,465 (GRCm39)	missense	possibly damaging	0.78
IGL01886:Orc1	APN	4	108,461,154 (GRCm39)	splice site	probably null
IGL01912:Orc1	APN	4	108,447,941 (GRCm39)	missense	probably damaging	1.00
IGL02057:Orc1	APN	4	108,445,926 (GRCm39)	missense	possibly damaging	0.53
IGL02155:Orc1	APN	4	108,447,874 (GRCm39)	missense	probably benign	0.00
IGL02311:Orc1	APN	4	108,457,171 (GRCm39)	missense	probably benign
IGL02616:Orc1	APN	4	108,452,676 (GRCm39)	missense	probably benign	0.00
R0012:Orc1	UTSW	4	108,452,843 (GRCm39)	critical splice donor site	probably null
R0195:Orc1	UTSW	4	108,471,505 (GRCm39)	nonsense	probably null
R0239:Orc1	UTSW	4	108,452,843 (GRCm39)	critical splice donor site	probably null
R0611:Orc1	UTSW	4	108,459,229 (GRCm39)	missense	probably benign
R1351:Orc1	UTSW	4	108,452,564 (GRCm39)	missense	probably benign	0.01
R1966:Orc1	UTSW	4	108,469,414 (GRCm39)	missense	probably damaging	1.00
R2018:Orc1	UTSW	4	108,447,897 (GRCm39)	missense	possibly damaging	0.95
R2398:Orc1	UTSW	4	108,459,166 (GRCm39)	missense	possibly damaging	0.68
R3110:Orc1	UTSW	4	108,461,757 (GRCm39)	missense	probably benign	0.01
R3112:Orc1	UTSW	4	108,461,757 (GRCm39)	missense	probably benign	0.01
R3712:Orc1	UTSW	4	108,461,218 (GRCm39)	missense	probably damaging	1.00
R3716:Orc1	UTSW	4	108,471,656 (GRCm39)	missense	probably damaging	1.00
R3829:Orc1	UTSW	4	108,462,828 (GRCm39)	missense	probably damaging	1.00
R4282:Orc1	UTSW	4	108,463,471 (GRCm39)	missense	probably benign	0.18
R4320:Orc1	UTSW	4	108,445,973 (GRCm39)	missense	probably benign
R4321:Orc1	UTSW	4	108,445,973 (GRCm39)	missense	probably benign
R4322:Orc1	UTSW	4	108,445,973 (GRCm39)	missense	probably benign
R4348:Orc1	UTSW	4	108,450,649 (GRCm39)	missense	probably damaging	0.98
R4562:Orc1	UTSW	4	108,459,252 (GRCm39)	critical splice donor site	probably null
R4772:Orc1	UTSW	4	108,436,765 (GRCm39)	utr 5 prime	probably benign
R4914:Orc1	UTSW	4	108,461,755 (GRCm39)	missense	probably damaging	1.00
R4964:Orc1	UTSW	4	108,471,670 (GRCm39)	makesense	probably null
R5219:Orc1	UTSW	4	108,447,966 (GRCm39)	missense	probably damaging	1.00
R5428:Orc1	UTSW	4	108,457,137 (GRCm39)	missense	probably benign	0.00
R5655:Orc1	UTSW	4	108,450,636 (GRCm39)	missense	probably benign	0.09
R5693:Orc1	UTSW	4	108,470,276 (GRCm39)	missense	probably benign	0.01
R5936:Orc1	UTSW	4	108,459,180 (GRCm39)	missense	probably benign	0.10
R5960:Orc1	UTSW	4	108,463,495 (GRCm39)	missense	possibly damaging	0.67
R6294:Orc1	UTSW	4	108,447,867 (GRCm39)	missense	probably benign	0.01
R6504:Orc1	UTSW	4	108,447,914 (GRCm39)	missense	probably benign	0.15
R6533:Orc1	UTSW	4	108,454,644 (GRCm39)	missense	probably benign	0.05
R6775:Orc1	UTSW	4	108,460,652 (GRCm39)	missense	probably damaging	1.00
R7123:Orc1	UTSW	4	108,445,884 (GRCm39)	start codon destroyed	probably damaging	0.99
R7156:Orc1	UTSW	4	108,452,656 (GRCm39)	missense	probably benign	0.00
R7327:Orc1	UTSW	4	108,445,911 (GRCm39)	missense	probably benign	0.01
R7552:Orc1	UTSW	4	108,445,951 (GRCm39)	missense	probably benign	0.41
R7842:Orc1	UTSW	4	108,462,744 (GRCm39)	missense	probably benign	0.00
R7899:Orc1	UTSW	4	108,460,568 (GRCm39)	splice site	probably null
R8033:Orc1	UTSW	4	108,462,761 (GRCm39)	missense	probably damaging	1.00
R9442:Orc1	UTSW	4	108,469,357 (GRCm39)	missense	probably benign	0.06
R9762:Orc1	UTSW	4	108,447,874 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GTAGTGGCATTAGCCCCAGAAGAAG -3'
(R):5'- AGAGGCATCAAGTGTCAGTGTGAATC -3'

Sequencing Primer
(F):5'- CCCCAGAAGAAGTGATTCCTGTG -3'
(R):5'- ggataactcccaaatggatgaaac -3'

Posted On

2013-07-11