Incidental Mutation 'R0032:Opa1'
ID 59445
Institutional Source Beutler Lab
Gene Symbol Opa1
Ensembl Gene ENSMUSG00000038084
Gene Name OPA1, mitochondrial dynamin like GTPase
Synonyms optic atrophy 1, lilr3, 1200011N24Rik
MMRRC Submission 038326-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R0032 (G1) of strain 731
Quality Score 112
Status Validated
Chromosome 16
Chromosomal Location 29398152-29473702 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 29433887 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Histidine to Leucine at position 574 (H574L)
Ref Sequence ENSEMBL: ENSMUSP00000123880 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000038867] [ENSMUST00000160475] [ENSMUST00000160597] [ENSMUST00000161186]
AlphaFold P58281
Predicted Effect possibly damaging
Transcript: ENSMUST00000038867
AA Change: H555L

PolyPhen 2 Score 0.549 (Sensitivity: 0.88; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000036993
Gene: ENSMUSG00000038084
AA Change: H555L

DomainStartEndE-ValueType
low complexity region 63 76 N/A INTRINSIC
low complexity region 91 101 N/A INTRINSIC
low complexity region 189 205 N/A INTRINSIC
coiled coil region 228 271 N/A INTRINSIC
DYNc 283 533 2.18e-10 SMART
coiled coil region 918 967 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159036
Predicted Effect noncoding transcript
Transcript: ENSMUST00000160101
Predicted Effect noncoding transcript
Transcript: ENSMUST00000160153
Predicted Effect possibly damaging
Transcript: ENSMUST00000160475
AA Change: H555L

PolyPhen 2 Score 0.692 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000124739
Gene: ENSMUSG00000038084
AA Change: H555L

DomainStartEndE-ValueType
low complexity region 63 76 N/A INTRINSIC
low complexity region 91 101 N/A INTRINSIC
low complexity region 189 205 N/A INTRINSIC
coiled coil region 228 271 N/A INTRINSIC
DYNc 283 533 2.18e-10 SMART
Blast:DYNc 608 632 1e-5 BLAST
Predicted Effect possibly damaging
Transcript: ENSMUST00000160597
AA Change: H537L

PolyPhen 2 Score 0.549 (Sensitivity: 0.88; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000124223
Gene: ENSMUSG00000038084
AA Change: H537L

DomainStartEndE-ValueType
low complexity region 63 76 N/A INTRINSIC
low complexity region 91 101 N/A INTRINSIC
coiled coil region 210 253 N/A INTRINSIC
DYNc 265 515 2.18e-10 SMART
coiled coil region 900 949 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000161186
AA Change: H574L

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000123880
Gene: ENSMUSG00000038084
AA Change: H574L

DomainStartEndE-ValueType
low complexity region 63 76 N/A INTRINSIC
low complexity region 91 101 N/A INTRINSIC
coiled coil region 207 290 N/A INTRINSIC
DYNc 302 552 2.18e-10 SMART
coiled coil region 937 986 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000162240
SMART Domains Protein: ENSMUSP00000124029
Gene: ENSMUSG00000038084

DomainStartEndE-ValueType
low complexity region 58 74 N/A INTRINSIC
coiled coil region 93 176 N/A INTRINSIC
Pfam:Dynamin_N 215 296 5.7e-18 PFAM
Meta Mutation Damage Score 0.0921 question?
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 98.9%
  • 10x: 97.4%
  • 20x: 94.8%
Validation Efficiency 100% (89/89)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene product is a nuclear-encoded mitochondrial protein with similarity to dynamin-related GTPases. It is a component of the mitochondrial network. Mutations in this gene have been associated with optic atrophy type 1, which is a dominantly inherited optic neuropathy resulting in progressive loss of visual acuity, leading in many cases to legal blindness. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Mar 2009]
PHENOTYPE: Mice homozygous for an ENU mutation exhibit embryonic lethality, embryonic growth retardation and morphological abnormalities. Mice heterozygous for an ENU mutation exhibit abnormal cellular morphology, altered optic nerve myelination, abnormal responseto a new environment and decreased vision. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 84 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acss3 T A 10: 106,959,156 (GRCm39) T97S probably benign Het
Adcy1 T C 11: 7,094,729 (GRCm39) S552P possibly damaging Het
Arrb1 T C 7: 99,231,472 (GRCm39) F9L probably damaging Het
Auts2 G C 5: 131,468,931 (GRCm39) D571E probably damaging Het
C2cd3 T A 7: 100,093,652 (GRCm39) probably benign Het
Ccbe1 T G 18: 66,424,723 (GRCm39) T35P possibly damaging Het
Cct6b G T 11: 82,644,469 (GRCm39) T202K possibly damaging Het
Cd86 A T 16: 36,441,235 (GRCm39) S77R probably damaging Het
Cdk5rap3 A T 11: 96,799,579 (GRCm39) L412Q possibly damaging Het
Cdsn G A 17: 35,866,452 (GRCm39) G327D probably damaging Het
Cfap54 C T 10: 92,768,559 (GRCm39) R188H probably benign Het
Clca3a2 T A 3: 144,522,494 (GRCm39) I176F probably benign Het
Cop1 T C 1: 159,152,606 (GRCm39) probably null Het
Cpne8 T A 15: 90,453,771 (GRCm39) probably benign Het
Ctsg T A 14: 56,339,196 (GRCm39) I21F probably damaging Het
Cyp2j9 T G 4: 96,457,043 (GRCm39) N476T possibly damaging Het
Dcaf4 G A 12: 83,582,762 (GRCm39) probably benign Het
Dennd4c T C 4: 86,746,387 (GRCm39) probably null Het
Des A G 1: 75,338,810 (GRCm39) E195G possibly damaging Het
Dicer1 A T 12: 104,671,057 (GRCm39) L995* probably null Het
Dnah10 A G 5: 124,877,955 (GRCm39) K2623R possibly damaging Het
Dnajc21 G T 15: 10,461,963 (GRCm39) T146K probably benign Het
Dnmbp A C 19: 43,891,158 (GRCm39) L203R probably damaging Het
Eif4g1 C T 16: 20,504,648 (GRCm39) S829F probably damaging Het
Enkur T C 2: 21,194,115 (GRCm39) I153V probably benign Het
Epb41l3 G T 17: 69,517,379 (GRCm39) probably null Het
Erf T C 7: 24,944,500 (GRCm39) Y277C possibly damaging Het
Fcsk G A 8: 111,618,735 (GRCm39) T341M possibly damaging Het
Fstl5 T A 3: 76,555,742 (GRCm39) probably benign Het
Galnt16 T C 12: 80,639,243 (GRCm39) V419A probably damaging Het
Gm10226 A G 17: 21,910,963 (GRCm39) D66G possibly damaging Het
Gm15821 T A 17: 34,431,199 (GRCm39) probably benign Het
Grm3 A G 5: 9,561,452 (GRCm39) probably null Het
Il11ra1 A G 4: 41,768,187 (GRCm39) E366G probably damaging Het
Impdh2 A G 9: 108,438,860 (GRCm39) D71G probably damaging Het
Ipo11 A C 13: 106,970,971 (GRCm39) probably benign Het
Ipo8 A G 6: 148,712,209 (GRCm39) C261R probably damaging Het
Iqsec3 T C 6: 121,450,089 (GRCm39) D145G possibly damaging Het
Itga11 T C 9: 62,681,377 (GRCm39) F998L probably benign Het
Junb T C 8: 85,704,415 (GRCm39) H215R probably benign Het
Kcnh4 C T 11: 100,637,758 (GRCm39) G633E probably benign Het
Kcnn3 CGCAGCAGCAGCAGCAGCAGCAG CGCAGCAGCAGCAGCAGCAG 3: 89,427,972 (GRCm39) probably benign Het
Krt73 T C 15: 101,702,487 (GRCm39) S459G probably benign Het
Krt74 T A 15: 101,669,887 (GRCm39) noncoding transcript Het
Meis3 C A 7: 15,916,210 (GRCm39) probably benign Het
Mlh3 A G 12: 85,292,523 (GRCm39) probably benign Het
Mroh2a GT GTT 1: 88,183,888 (GRCm39) probably null Het
Naip6 C T 13: 100,439,745 (GRCm39) E341K probably benign Het
Nbeal2 G T 9: 110,466,936 (GRCm39) probably benign Het
Nfx1 T A 4: 41,015,321 (GRCm39) V842E probably benign Het
Oma1 T A 4: 103,223,209 (GRCm39) S465T possibly damaging Het
Or10al2 T A 17: 37,983,378 (GRCm39) W155R probably damaging Het
Or6c210 T A 10: 129,496,269 (GRCm39) V198D probably benign Het
Or8c13 A G 9: 38,091,904 (GRCm39) C72R probably damaging Het
Otog T A 7: 45,937,637 (GRCm39) L1782* probably null Het
Otog G A 7: 45,953,655 (GRCm39) V2638M probably damaging Het
Pcsk5 T C 19: 17,542,179 (GRCm39) N804S possibly damaging Het
Pde4a C A 9: 21,112,728 (GRCm39) probably benign Het
Pilra T A 5: 137,829,527 (GRCm39) D179V probably damaging Het
Piwil1 G A 5: 128,820,344 (GRCm39) S247N probably benign Het
Ppp2r1a G A 17: 21,165,846 (GRCm39) probably benign Het
Prss58 T G 6: 40,872,633 (GRCm39) T158P probably benign Het
Setmar T A 6: 108,053,377 (GRCm39) C290* probably null Het
Slc35e3 T C 10: 117,580,837 (GRCm39) M156V probably benign Het
Slc4a5 T A 6: 83,250,139 (GRCm39) I509N probably damaging Het
Slit2 G A 5: 48,414,198 (GRCm39) R938Q probably damaging Het
Snrpn A G 7: 59,634,830 (GRCm39) Y168H probably damaging Het
Sycn C T 7: 28,240,717 (GRCm39) A128V possibly damaging Het
Synm C A 7: 67,383,675 (GRCm39) R1329M possibly damaging Het
Syt8 T C 7: 141,992,926 (GRCm39) V152A probably benign Het
Tcp10a T C 17: 7,604,306 (GRCm39) M247T probably benign Het
Tjp2 A G 19: 24,086,059 (GRCm39) L821S probably damaging Het
Tppp2 G T 14: 52,156,866 (GRCm39) R81L possibly damaging Het
Trim34b A G 7: 103,985,784 (GRCm39) D473G possibly damaging Het
Trpc3 A G 3: 36,698,405 (GRCm39) I618T probably damaging Het
Trpm5 A T 7: 142,638,978 (GRCm39) D264E probably damaging Het
Tuba8 A T 6: 121,202,863 (GRCm39) D392V probably benign Het
Vmn1r50 C A 6: 90,084,782 (GRCm39) P176T probably damaging Het
Vmn1r76 T C 7: 11,665,194 (GRCm39) I7V probably benign Het
Vmn2r26 T A 6: 124,016,858 (GRCm39) W441R possibly damaging Het
Vmn2r57 T C 7: 41,049,157 (GRCm39) probably null Het
Zc3h4 T A 7: 16,168,565 (GRCm39) D891E unknown Het
Zfp120 A T 2: 149,959,512 (GRCm39) V270E possibly damaging Het
Znhit1 G C 5: 137,013,901 (GRCm39) R8G possibly damaging Het
Other mutations in Opa1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01082:Opa1 APN 16 29,436,933 (GRCm39) splice site probably benign
IGL01087:Opa1 APN 16 29,405,815 (GRCm39) missense probably damaging 1.00
IGL01799:Opa1 APN 16 29,435,476 (GRCm39) missense possibly damaging 0.61
IGL01927:Opa1 APN 16 29,405,813 (GRCm39) missense probably benign 0.35
IGL02067:Opa1 APN 16 29,435,473 (GRCm39) missense probably damaging 1.00
IGL02317:Opa1 APN 16 29,433,984 (GRCm39) critical splice donor site probably null
IGL02567:Opa1 APN 16 29,407,104 (GRCm39) missense probably benign 0.01
IGL02826:Opa1 APN 16 29,429,705 (GRCm39) missense probably null
Longshanks UTSW 16 29,437,077 (GRCm39) missense probably damaging 1.00
R0032:Opa1 UTSW 16 29,433,887 (GRCm39) missense probably damaging 1.00
R0092:Opa1 UTSW 16 29,444,412 (GRCm39) missense probably damaging 0.99
R0114:Opa1 UTSW 16 29,448,453 (GRCm39) missense probably benign 0.35
R0200:Opa1 UTSW 16 29,432,947 (GRCm39) missense probably benign 0.08
R0308:Opa1 UTSW 16 29,440,349 (GRCm39) missense probably damaging 0.98
R0427:Opa1 UTSW 16 29,430,279 (GRCm39) missense probably damaging 0.98
R0671:Opa1 UTSW 16 29,421,025 (GRCm39) splice site probably benign
R1768:Opa1 UTSW 16 29,439,628 (GRCm39) missense probably benign
R1889:Opa1 UTSW 16 29,444,403 (GRCm39) missense possibly damaging 0.67
R3932:Opa1 UTSW 16 29,429,698 (GRCm39) missense probably damaging 1.00
R3933:Opa1 UTSW 16 29,429,698 (GRCm39) missense probably damaging 1.00
R4434:Opa1 UTSW 16 29,430,801 (GRCm39) missense probably damaging 1.00
R4618:Opa1 UTSW 16 29,405,857 (GRCm39) missense probably damaging 1.00
R4926:Opa1 UTSW 16 29,467,791 (GRCm39) missense possibly damaging 0.94
R5163:Opa1 UTSW 16 29,416,438 (GRCm39) missense probably damaging 0.99
R5249:Opa1 UTSW 16 29,437,077 (GRCm39) missense probably damaging 1.00
R5266:Opa1 UTSW 16 29,436,948 (GRCm39) missense probably benign 0.19
R5275:Opa1 UTSW 16 29,430,397 (GRCm39) missense probably damaging 1.00
R5372:Opa1 UTSW 16 29,404,937 (GRCm39) missense probably benign 0.00
R5990:Opa1 UTSW 16 29,405,836 (GRCm39) missense probably damaging 0.99
R6054:Opa1 UTSW 16 29,433,952 (GRCm39) missense probably damaging 1.00
R6483:Opa1 UTSW 16 29,447,525 (GRCm39) missense possibly damaging 0.72
R6522:Opa1 UTSW 16 29,444,332 (GRCm39) missense probably benign 0.06
R6889:Opa1 UTSW 16 29,439,686 (GRCm39) missense probably benign 0.22
R7225:Opa1 UTSW 16 29,432,857 (GRCm39) splice site probably null
R7243:Opa1 UTSW 16 29,405,814 (GRCm39) missense probably benign 0.01
R7324:Opa1 UTSW 16 29,405,799 (GRCm39) missense probably benign
R7831:Opa1 UTSW 16 29,467,755 (GRCm39) missense probably benign 0.02
R8304:Opa1 UTSW 16 29,416,489 (GRCm39) missense possibly damaging 0.80
R8317:Opa1 UTSW 16 29,432,962 (GRCm39) missense probably damaging 1.00
R8353:Opa1 UTSW 16 29,439,686 (GRCm39) missense probably damaging 0.99
R8453:Opa1 UTSW 16 29,439,686 (GRCm39) missense probably damaging 0.99
R8795:Opa1 UTSW 16 29,448,450 (GRCm39) missense probably damaging 1.00
R8919:Opa1 UTSW 16 29,424,340 (GRCm39) missense probably damaging 1.00
R9053:Opa1 UTSW 16 29,404,836 (GRCm39) nonsense probably null
R9087:Opa1 UTSW 16 29,437,053 (GRCm39) missense probably damaging 1.00
R9172:Opa1 UTSW 16 29,439,232 (GRCm39) missense probably benign 0.01
R9355:Opa1 UTSW 16 29,432,807 (GRCm39) missense probably damaging 1.00
R9434:Opa1 UTSW 16 29,404,874 (GRCm39) missense probably benign 0.01
R9511:Opa1 UTSW 16 29,429,738 (GRCm39) missense probably damaging 1.00
R9612:Opa1 UTSW 16 29,430,255 (GRCm39) missense
R9784:Opa1 UTSW 16 29,437,029 (GRCm39) nonsense probably null
RF012:Opa1 UTSW 16 29,432,784 (GRCm39) missense probably damaging 1.00
T0722:Opa1 UTSW 16 29,429,748 (GRCm39) critical splice donor site probably null
X0065:Opa1 UTSW 16 29,439,602 (GRCm39) missense possibly damaging 0.67
Predicted Primers PCR Primer
(F):5'- GTGTCTCGTAGACAAAAGCCATCCC -3'
(R):5'- ACACTACCGTAAGCCTGCTGCTTC -3'

Sequencing Primer
(F):5'- GTAGACAAAAGCCATCCCTTCAG -3'
(R):5'- CTTCTGACAGGGAAAGTCAGTTC -3'
Posted On 2013-07-11