Incidental Mutation 'IGL00516:Pdcd2l'
ID 6289
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Pdcd2l
Ensembl Gene ENSMUSG00000002635
Gene Name programmed cell death 2-like
Synonyms 6030457N17Rik
Accession Numbers
Essential gene? Probably essential (E-score: 0.871) question?
Stock # IGL00516
Quality Score
Status
Chromosome 7
Chromosomal Location 33883924-33896086 bp(-) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) A to T at 33884246 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Gene Model predicted gene model for transcript(s): [ENSMUST00000002710]
AlphaFold Q8C5N5
Predicted Effect probably null
Transcript: ENSMUST00000002710
SMART Domains Protein: ENSMUSP00000002710
Gene: ENSMUSG00000002635

DomainStartEndE-ValueType
Pfam:PDCD2_C 192 356 3e-44 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000121425
Predicted Effect probably null
Transcript: ENSMUST00000148381
SMART Domains Protein: ENSMUSP00000115874
Gene: ENSMUSG00000002635

DomainStartEndE-ValueType
Pfam:PDCD2_C 181 270 4.4e-11 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000206088
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 42 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
5730455P16Rik T C 11: 80,267,638 (GRCm39) D91G possibly damaging Het
Abcc1 T A 16: 14,231,176 (GRCm39) L438* probably null Het
Asph A T 4: 9,639,322 (GRCm39) N14K probably damaging Het
Baz1b T C 5: 135,245,444 (GRCm39) Y298H probably damaging Het
Ccdc66 A T 14: 27,220,413 (GRCm39) W267R probably damaging Het
Cd81 A C 7: 142,620,901 (GRCm39) K193N probably damaging Het
Cdkn1a C A 17: 29,317,494 (GRCm39) A38E possibly damaging Het
Cflar T C 1: 58,771,469 (GRCm39) I199T probably benign Het
Cmya5 A G 13: 93,234,675 (GRCm39) S138P possibly damaging Het
Cnot1 T C 8: 96,452,707 (GRCm39) N2123S probably damaging Het
Crybg3 A G 16: 59,350,803 (GRCm39) S846P probably benign Het
Cyp2d9 A G 15: 82,339,295 (GRCm39) I21M probably benign Het
Ddx41 T C 13: 55,680,280 (GRCm39) T371A probably damaging Het
Dnhd1 A T 7: 105,306,418 (GRCm39) I425F possibly damaging Het
Dsc1 T C 18: 20,234,943 (GRCm39) D237G probably damaging Het
Emc1 T C 4: 139,082,393 (GRCm39) probably benign Het
Epc1 T A 18: 6,450,515 (GRCm39) D367V probably damaging Het
Glp1r A G 17: 31,144,532 (GRCm39) Y235C probably damaging Het
Helb A G 10: 119,941,329 (GRCm39) V453A probably damaging Het
Hras A G 7: 140,772,783 (GRCm39) I24T possibly damaging Het
Hsf2 A T 10: 57,388,124 (GRCm39) I423L probably benign Het
Igkv2-109 T A 6: 68,280,054 (GRCm39) S92T probably benign Het
Kiss1r G A 10: 79,754,550 (GRCm39) A15T possibly damaging Het
Krt79 T C 15: 101,848,601 (GRCm39) S17G probably damaging Het
Lrrc14b T C 13: 74,509,078 (GRCm39) D443G probably damaging Het
Map4k4 T A 1: 40,053,762 (GRCm39) V953E probably damaging Het
Mybpc2 G A 7: 44,154,829 (GRCm39) probably benign Het
Nadsyn1 T C 7: 143,366,530 (GRCm39) E173G probably damaging Het
Neurl4 C T 11: 69,801,219 (GRCm39) R1199W probably damaging Het
Otog T A 7: 45,900,706 (GRCm39) V333E probably damaging Het
Plagl1 A G 10: 13,003,616 (GRCm39) probably benign Het
Rbm34 T C 8: 127,696,736 (GRCm39) N122S probably benign Het
Shank2 A G 7: 143,964,512 (GRCm39) K917E possibly damaging Het
Slc17a8 T C 10: 89,427,157 (GRCm39) K315E possibly damaging Het
Sp110 A C 1: 85,505,050 (GRCm39) F434C probably benign Het
Sytl2 A G 7: 90,022,113 (GRCm39) T183A probably benign Het
Tnik T A 3: 28,708,367 (GRCm39) I1067N probably damaging Het
Tpd52l2 A G 2: 181,154,861 (GRCm39) D192G probably damaging Het
Trhde A T 10: 114,282,104 (GRCm39) I791N probably benign Het
Ttc28 A T 5: 111,373,554 (GRCm39) N966Y probably damaging Het
Vps13b A T 15: 35,640,703 (GRCm39) D1356V probably damaging Het
Zmym2 A G 14: 57,185,394 (GRCm39) probably benign Het
Other mutations in Pdcd2l
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00818:Pdcd2l APN 7 33,884,158 (GRCm39) missense possibly damaging 0.88
IGL01417:Pdcd2l APN 7 33,892,170 (GRCm39) missense probably damaging 1.00
R0600:Pdcd2l UTSW 7 33,892,232 (GRCm39) missense possibly damaging 0.47
R0976:Pdcd2l UTSW 7 33,895,771 (GRCm39) missense probably benign
R1815:Pdcd2l UTSW 7 33,885,826 (GRCm39) missense probably benign 0.06
R5215:Pdcd2l UTSW 7 33,892,314 (GRCm39) missense possibly damaging 0.75
R7743:Pdcd2l UTSW 7 33,892,256 (GRCm39) missense probably benign 0.18
R8842:Pdcd2l UTSW 7 33,884,192 (GRCm39) nonsense probably null
R9021:Pdcd2l UTSW 7 33,885,760 (GRCm39) missense probably damaging 1.00
R9570:Pdcd2l UTSW 7 33,892,401 (GRCm39) missense probably benign 0.44
R9635:Pdcd2l UTSW 7 33,892,356 (GRCm39) missense possibly damaging 0.50
Posted On 2012-04-20