Incidental Mutation 'IGL00514:Aplf'
ID6345
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Aplf
Ensembl Gene ENSMUSG00000030051
Gene Nameaprataxin and PNKP like factor
Synonyms2010301N04Rik
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.117) question?
Stock #IGL00514
Quality Score
Status
Chromosome6
Chromosomal Location87628424-87672193 bp(-) (GRCm38)
Type of Mutationsplice site
DNA Base Change (assembly) A to G at 87668408 bp
ZygosityHeterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000145358 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000032130] [ENSMUST00000065997] [ENSMUST00000203209]
Predicted Effect probably benign
Transcript: ENSMUST00000032130
SMART Domains Protein: ENSMUSP00000032130
Gene: ENSMUSG00000030051

DomainStartEndE-ValueType
SCOP:d1lgpa_ 6 105 2e-11 SMART
low complexity region 264 278 N/A INTRINSIC
low complexity region 340 349 N/A INTRINSIC
Pfam:zf-CCHH 372 396 1.7e-16 PFAM
Pfam:zf-CCHH 414 437 6.8e-15 PFAM
low complexity region 456 471 N/A INTRINSIC
low complexity region 477 486 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000065997
SMART Domains Protein: ENSMUSP00000066232
Gene: ENSMUSG00000030051

DomainStartEndE-ValueType
SCOP:d1lgpa_ 14 84 7e-6 SMART
low complexity region 243 257 N/A INTRINSIC
low complexity region 319 328 N/A INTRINSIC
Pfam:zf-CCHH 351 376 1.7e-15 PFAM
Pfam:zf-CCHH 393 417 1.9e-15 PFAM
low complexity region 435 450 N/A INTRINSIC
low complexity region 456 465 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000095740
Predicted Effect noncoding transcript
Transcript: ENSMUST00000159884
Predicted Effect noncoding transcript
Transcript: ENSMUST00000160577
Predicted Effect probably benign
Transcript: ENSMUST00000203209
Predicted Effect noncoding transcript
Transcript: ENSMUST00000203776
Predicted Effect noncoding transcript
Transcript: ENSMUST00000204112
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] C2ORF13 is a component of the cellular response to chromosomal DNA single- and double-strand breaks (Iles et al., 2007 [PubMed 17353262]).[supplied by OMIM, Mar 2008]
PHENOTYPE: Mice homozygous for a gene trap allele exhibit decreased repair of gamma irradiation-induced DNA damage and increased microhomology at class switch recombination junctions in B cells. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 36 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4933409G03Rik A G 2: 68,601,797 E75G unknown Het
Ank3 T C 10: 69,982,205 probably benign Het
Baz2b A T 2: 59,962,477 F436I probably benign Het
Blmh A G 11: 76,967,013 D327G probably damaging Het
Bmt2 A T 6: 13,628,753 H310Q probably damaging Het
Cfap46 C T 7: 139,660,689 S56N probably damaging Het
Col19a1 T C 1: 24,536,932 K110E unknown Het
Cyp2c68 T C 19: 39,712,495 D293G probably damaging Het
Ears2 T A 7: 122,039,762 K480* probably null Het
Efhc1 C T 1: 20,979,481 Q522* probably null Het
Ehd4 G A 2: 120,091,213 P521S probably damaging Het
Endov G T 11: 119,491,465 probably benign Het
Fgfr2 T G 7: 130,167,711 T648P probably benign Het
Hsf5 A G 11: 87,623,096 Y329C probably damaging Het
Kntc1 T A 5: 123,791,527 S1308T probably benign Het
Mill1 A T 7: 18,264,641 T259S possibly damaging Het
Ms4a4c C T 19: 11,419,036 A111V probably damaging Het
Myh1 G T 11: 67,219,784 R1507M probably damaging Het
Nbeal1 G A 1: 60,217,225 D210N probably benign Het
Neo1 G T 9: 58,921,919 probably benign Het
Nipsnap2 A G 5: 129,754,851 D236G probably damaging Het
Plekhh2 G T 17: 84,596,306 probably null Het
Prox2 A T 12: 85,094,778 M217K probably benign Het
Rgl2 G A 17: 33,933,136 G299E probably benign Het
Rragb T G X: 153,171,298 C370W possibly damaging Het
Scn9a A T 2: 66,563,601 N209K probably damaging Het
Sec61g A T 11: 16,501,817 probably benign Het
Slc38a7 A G 8: 95,840,477 probably benign Het
Smcr8 A T 11: 60,778,367 K114* probably null Het
Stag3 T C 5: 138,300,135 L730P probably damaging Het
Syn3 A G 10: 86,354,416 L183P probably damaging Het
Tbk1 A T 10: 121,552,250 C637S probably benign Het
Tmem30c A T 16: 57,270,074 Y257N probably damaging Het
Trpm3 C T 19: 22,987,659 T1506M probably benign Het
Yes1 A C 5: 32,655,129 K248Q probably benign Het
Zfp638 A T 6: 83,956,698 K811N probably damaging Het
Other mutations in Aplf
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01304:Aplf APN 6 87641900 missense possibly damaging 0.71
IGL02267:Aplf APN 6 87658964 missense probably damaging 1.00
R0294:Aplf UTSW 6 87646245 missense probably benign 0.02
R0352:Aplf UTSW 6 87653884 missense probably benign 0.01
R0445:Aplf UTSW 6 87663752 missense probably damaging 1.00
R0959:Aplf UTSW 6 87646083 missense probably benign 0.24
R1127:Aplf UTSW 6 87646291 missense probably benign 0.00
R1583:Aplf UTSW 6 87646033 missense probably damaging 1.00
R2878:Aplf UTSW 6 87668427 nonsense probably null
R3617:Aplf UTSW 6 87671883 missense possibly damaging 0.85
R4708:Aplf UTSW 6 87663757 missense probably damaging 1.00
R4823:Aplf UTSW 6 87646255 missense probably damaging 1.00
R4919:Aplf UTSW 6 87630064 missense possibly damaging 0.94
R4941:Aplf UTSW 6 87668423 missense probably damaging 1.00
R4941:Aplf UTSW 6 87646349 missense probably benign 0.00
R5208:Aplf UTSW 6 87642026 splice site probably null
R5575:Aplf UTSW 6 87646147 missense probably benign 0.02
R6271:Aplf UTSW 6 87646248 missense possibly damaging 0.88
R6381:Aplf UTSW 6 87658977 missense probably damaging 0.96
R6772:Aplf UTSW 6 87663799 missense possibly damaging 0.76
R6906:Aplf UTSW 6 87630086 missense possibly damaging 0.65
R6975:Aplf UTSW 6 87646086 missense probably damaging 0.98
R7015:Aplf UTSW 6 87641902 missense probably damaging 0.99
R7038:Aplf UTSW 6 87653823 nonsense probably null
Posted On2012-04-20