Mutagenetix > Incidental Mutation

Incidental Mutation 'R0026:Ttf1'

64488

Institutional Source

Beutler Lab

Gene Symbol

Ttf1

Ensembl Gene

ENSMUSG00000026803

Gene Name

transcription termination factor, RNA polymerase I

Synonyms

MMRRC Submission

038321-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.936) question?

Stock #

R0026 (G1)

Quality Score

Status

Validated

Chromosome

Chromosomal Location

28950274-28977668 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 28961361 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 583 (I583N)

Ref Sequence

ENSEMBL: ENSMUSP00000097809 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000100237]

AlphaFold

Q62187

Predicted Effect

possibly damaging
Transcript: ENSMUST00000100237
AA Change: I583N

PolyPhen 2 Score 0.953 (Sensitivity: 0.79; Specificity: 0.95)

SMART Domains

Protein: ENSMUSP00000097809
Gene: ENSMUSG00000026803
AA Change: I583N

Domain	Start	End	E-Value	Type
internal_repeat_1	13	67	1.04e-14	PROSPERO
internal_repeat_1	85	142	1.04e-14	PROSPERO
low complexity region	143	153	N/A	INTRINSIC
low complexity region	171	183	N/A	INTRINSIC
low complexity region	274	293	N/A	INTRINSIC
low complexity region	350	387	N/A	INTRINSIC
low complexity region	434	447	N/A	INTRINSIC
low complexity region	451	461	N/A	INTRINSIC
Blast:SANT	508	585	8e-28	BLAST
SANT	589	636	2.37e-6	SMART
SANT	638	720	1.8e-6	SMART
low complexity region	805	819	N/A	INTRINSIC
low complexity region	842	857	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000122866

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000142786

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.3%
3x: 98.9%
10x: 97.8%
20x: 96.3%

Validation Efficiency

93% (70/75)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	T	A	3: 137,772,566 (GRCm39)	I585N	possibly damaging	Het
A830005F24Rik	C	T	13: 48,667,848 (GRCm39)		probably benign	Het
Abca16	C	T	7: 120,077,146 (GRCm39)		probably benign	Het
Acot10	G	A	15: 20,666,322 (GRCm39)	L140F	probably benign	Het
Adam19	G	T	11: 46,027,086 (GRCm39)	C573F	probably damaging	Het
Aff3	A	G	1: 38,242,974 (GRCm39)	S948P	probably benign	Het
Anxa3	T	A	5: 96,986,260 (GRCm39)	Y300N	probably benign	Het
BC016579	T	C	16: 45,460,730 (GRCm39)	T113A	probably benign	Het
Bmpr1b	A	G	3: 141,576,494 (GRCm39)	L113P	probably benign	Het
Casq1	T	C	1: 172,046,967 (GRCm39)		probably benign	Het
Cdc16	T	A	8: 13,809,130 (GRCm39)		probably null	Het
Cep135	C	T	5: 76,754,581 (GRCm39)	R353*	probably null	Het
Cma1	A	T	14: 56,179,621 (GRCm39)	C188S	probably damaging	Het
Csf3r	A	G	4: 125,925,677 (GRCm39)	T151A	probably benign	Het
Cyp4b1	C	T	4: 115,504,718 (GRCm39)	G56D	possibly damaging	Het
Dbn1	T	C	13: 55,625,597 (GRCm39)	E275G	probably damaging	Het
Dlgap2	C	T	8: 14,777,363 (GRCm39)	Q203*	probably null	Het
Ephb3	A	G	16: 21,033,667 (GRCm39)	D251G	probably damaging	Het
Fancd2os	G	T	6: 113,574,652 (GRCm39)	T118N	probably damaging	Het
Gm10801	T	C	2: 98,494,254 (GRCm39)		probably benign	Het
Got1l1	C	T	8: 27,690,276 (GRCm39)	V132I	probably benign	Het
H2-M9	T	C	17: 36,952,419 (GRCm39)		probably benign	Het
Ibtk	A	G	9: 85,572,356 (GRCm39)	V1278A	probably benign	Het
Kctd3	T	C	1: 188,708,818 (GRCm39)	T519A	probably damaging	Het
Lgsn	T	A	1: 31,242,524 (GRCm39)	V202D	probably damaging	Het
Madd	A	G	2: 91,006,053 (GRCm39)	F381L	possibly damaging	Het
Map1s	G	A	8: 71,367,282 (GRCm39)	G729D	probably damaging	Het
Mlycd	A	G	8: 120,137,174 (GRCm39)	I465V	probably benign	Het
Mrgprb1	T	C	7: 48,096,952 (GRCm39)	R108G	possibly damaging	Het
Mrgprx2	T	A	7: 48,131,771 (GRCm39)	H106L	possibly damaging	Het
Ncor1	T	C	11: 62,329,255 (GRCm39)	Y6C	probably damaging	Het
Nfkb1	T	C	3: 135,297,334 (GRCm39)	D773G	probably damaging	Het
Nxnl1	A	G	8: 72,019,217 (GRCm39)	S3P	probably damaging	Het
Or12d17	T	A	17: 37,777,694 (GRCm39)	V199D	probably damaging	Het
Or8b54	G	A	9: 38,686,892 (GRCm39)	V114I	probably benign	Het
Otud7a	T	C	7: 63,385,549 (GRCm39)	F338L	probably benign	Het
Pdcl3	T	A	1: 39,030,361 (GRCm39)	L14Q	probably damaging	Het
Pla2g7	T	A	17: 43,905,821 (GRCm39)		probably benign	Het
Prpf31	T	A	7: 3,642,667 (GRCm39)	N413K	probably benign	Het
Rapgef5	T	C	12: 117,652,896 (GRCm39)	S307P	probably benign	Het
Relt	C	A	7: 100,499,428 (GRCm39)	E164*	probably null	Het
Rnf185	T	C	11: 3,376,617 (GRCm39)	D86G	probably damaging	Het
Rrm2b	T	C	15: 37,953,985 (GRCm39)	E21G	probably benign	Het
Scn5a	A	G	9: 119,351,632 (GRCm39)	I783T	probably damaging	Het
Senp1	T	C	15: 97,974,549 (GRCm39)	R88G	probably damaging	Het
Skint5	A	T	4: 113,403,665 (GRCm39)		probably benign	Het
Slc35b1	T	C	11: 95,281,468 (GRCm39)	S294P	probably benign	Het
Slc5a2	T	A	7: 127,869,225 (GRCm39)	I335N	probably damaging	Het
Spata31e2	T	A	1: 26,722,450 (GRCm39)	D910V	probably benign	Het
Sstr1	T	A	12: 58,259,644 (GRCm39)	M89K	probably damaging	Het
Szt2	A	T	4: 118,241,969 (GRCm39)	S1612R	possibly damaging	Het
Taf1c	T	C	8: 120,330,975 (GRCm39)		probably null	Het
Taf1d	T	A	9: 15,219,944 (GRCm39)	S64R	probably damaging	Het
Tmem125	A	G	4: 118,399,270 (GRCm39)	S54P	possibly damaging	Het
Uchl4	A	T	9: 64,142,653 (GRCm39)		probably null	Het
Unc5b	A	T	10: 60,610,371 (GRCm39)	I482N	possibly damaging	Het
Unc80	C	A	1: 66,560,743 (GRCm39)	Q824K	probably benign	Het
Utrn	T	C	10: 12,601,940 (GRCm39)		probably benign	Het
Vmn2r61	T	G	7: 41,924,898 (GRCm39)	I484R	possibly damaging	Het
Vps13b	T	C	15: 35,923,447 (GRCm39)	I3774T	possibly damaging	Het
Yipf1	T	A	4: 107,202,357 (GRCm39)	L240*	probably null	Het

Other mutations in Ttf1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00585:Ttf1	APN	2	28,963,895 (GRCm39)	splice site	probably benign
IGL00916:Ttf1	APN	2	28,960,054 (GRCm39)	missense	probably benign	0.05
IGL02148:Ttf1	APN	2	28,969,438 (GRCm39)	missense	probably benign	0.17
IGL02631:Ttf1	APN	2	28,959,912 (GRCm39)	missense	probably damaging	0.98
IGL02658:Ttf1	APN	2	28,964,023 (GRCm39)	missense	probably damaging	1.00
IGL03057:Ttf1	APN	2	28,961,357 (GRCm39)	missense	probably damaging	0.98
R0047:Ttf1	UTSW	2	28,974,667 (GRCm39)	missense	probably damaging	1.00
R0047:Ttf1	UTSW	2	28,974,667 (GRCm39)	missense	probably damaging	1.00
R0427:Ttf1	UTSW	2	28,955,054 (GRCm39)	missense	probably benign	0.00
R0466:Ttf1	UTSW	2	28,955,419 (GRCm39)	missense	possibly damaging	0.79
R0834:Ttf1	UTSW	2	28,963,962 (GRCm39)	nonsense	probably null
R1548:Ttf1	UTSW	2	28,955,150 (GRCm39)	missense	probably damaging	0.96
R1672:Ttf1	UTSW	2	28,957,164 (GRCm39)	missense	probably damaging	0.98
R1696:Ttf1	UTSW	2	28,960,014 (GRCm39)	missense	probably damaging	1.00
R1819:Ttf1	UTSW	2	28,964,796 (GRCm39)	missense	possibly damaging	0.60
R2000:Ttf1	UTSW	2	28,955,197 (GRCm39)	missense	possibly damaging	0.79
R2126:Ttf1	UTSW	2	28,961,357 (GRCm39)	missense	probably damaging	0.98
R2426:Ttf1	UTSW	2	28,957,197 (GRCm39)	missense	probably damaging	0.98
R2967:Ttf1	UTSW	2	28,955,395 (GRCm39)	missense	possibly damaging	0.56
R3499:Ttf1	UTSW	2	28,955,499 (GRCm39)	missense	possibly damaging	0.92
R3963:Ttf1	UTSW	2	28,954,816 (GRCm39)	missense	possibly damaging	0.68
R4342:Ttf1	UTSW	2	28,955,488 (GRCm39)	missense	probably benign	0.01
R4627:Ttf1	UTSW	2	28,955,172 (GRCm39)	missense	possibly damaging	0.72
R4676:Ttf1	UTSW	2	28,964,606 (GRCm39)	missense	probably damaging	0.96
R4907:Ttf1	UTSW	2	28,954,668 (GRCm39)	missense	possibly damaging	0.72
R4909:Ttf1	UTSW	2	28,954,668 (GRCm39)	missense	possibly damaging	0.72
R4926:Ttf1	UTSW	2	28,954,668 (GRCm39)	missense	possibly damaging	0.72
R4927:Ttf1	UTSW	2	28,954,668 (GRCm39)	missense	possibly damaging	0.72
R5746:Ttf1	UTSW	2	28,955,754 (GRCm39)	missense	probably damaging	0.96
R5948:Ttf1	UTSW	2	28,963,932 (GRCm39)	missense	possibly damaging	0.50
R6911:Ttf1	UTSW	2	28,954,863 (GRCm39)	missense	probably benign	0.41
R7909:Ttf1	UTSW	2	28,955,471 (GRCm39)	missense	probably benign	0.00
R8141:Ttf1	UTSW	2	28,957,238 (GRCm39)	nonsense	probably null
R8264:Ttf1	UTSW	2	28,954,689 (GRCm39)	missense	possibly damaging	0.91
R8863:Ttf1	UTSW	2	28,969,492 (GRCm39)	critical splice donor site	probably null
R9094:Ttf1	UTSW	2	28,957,080 (GRCm39)	missense	probably benign	0.15
R9281:Ttf1	UTSW	2	28,955,902 (GRCm39)	missense	probably benign	0.01
R9318:Ttf1	UTSW	2	28,964,666 (GRCm39)	missense	possibly damaging	0.47
R9440:Ttf1	UTSW	2	28,955,709 (GRCm39)	missense	probably benign	0.41
R9483:Ttf1	UTSW	2	28,969,492 (GRCm39)	critical splice donor site	probably null
X0066:Ttf1	UTSW	2	28,964,787 (GRCm39)	missense	probably benign	0.05
Z1176:Ttf1	UTSW	2	28,961,349 (GRCm39)	missense	probably damaging	1.00
Z1176:Ttf1	UTSW	2	28,955,824 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCACACTGCTGCACATGACTTAAC -3'
(R):5'- GTGCTGAAGCCCAGGTACAAAGATAC -3'

Sequencing Primer
(F):5'- TTAACCATGTCACGCAGGG -3'
(R):5'- CCACAAGGCTTATTAAAGAACTGG -3'

Posted On

2013-08-06