Mutagenetix > Incidental Mutation

Incidental Mutation 'R0373:Tnfrsf19'

65627

Institutional Source

Beutler Lab

Gene Symbol

Tnfrsf19

Ensembl Gene

ENSMUSG00000060548

Gene Name

tumor necrosis factor receptor superfamily, member 19

Synonyms

TAJ, TRADE, TAJ-ALPHA, Troy

MMRRC Submission

038579-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R0373 (G1)

Quality Score

160

Status

Not validated

Chromosome

Chromosomal Location

61201324-61283939 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 61209485 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 262 (S262P)

Ref Sequence

ENSEMBL: ENSMUSP00000106867 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000111234] [ENSMUST00000111236] [ENSMUST00000224371] [ENSMUST00000225730]

AlphaFold

Q9JLL3

Predicted Effect

possibly damaging
Transcript: ENSMUST00000111234
AA Change: S262P

PolyPhen 2 Score 0.473 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000106865
Gene: ENSMUSG00000060548
AA Change: S262P

Domain	Start	End	E-Value	Type
signal peptide	1	29	N/A	INTRINSIC
TNFR	34	72	1.75e0	SMART
TNFR	75	114	3.32e-1	SMART
transmembrane domain	169	191	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000111236
AA Change: S262P

PolyPhen 2 Score 0.473 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000106867
Gene: ENSMUSG00000060548
AA Change: S262P

Domain	Start	End	E-Value	Type
signal peptide	1	29	N/A	INTRINSIC
TNFR	34	72	1.75e0	SMART
TNFR	75	114	3.32e-1	SMART
transmembrane domain	169	191	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000224371

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000225501

Predicted Effect

probably benign
Transcript: ENSMUST00000225730

Coding Region Coverage

1x: 99.1%
3x: 98.1%
10x: 95.8%
20x: 91.5%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the TNF-receptor superfamily. This receptor is highly expressed during embryonic development. It has been shown to interact with TRAF family members, and to activate JNK signaling pathway when overexpressed in cells. This receptor is capable of inducing apoptosis by a caspase-independent mechanism, and it is thought to play an essential role in embryonic development. Alternatively spliced transcript variants encoding distinct isoforms have been described. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous mutant mice exhibit no obvious physical abnormalities or alterations in behavior, locomotion, or fecundity, however neurons are more resistant to the suppressive action of myelin inhibitors. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 93 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930579F01Rik	A	T	3: 137,879,343 (GRCm39)	L235Q	probably damaging	Het
Aadacl4fm4	A	T	4: 144,412,790 (GRCm39)	M50K	possibly damaging	Het
Adam6b	T	A	12: 113,454,275 (GRCm39)	V364D	probably benign	Het
Akap13	T	C	7: 75,259,677 (GRCm39)	L767P	probably benign	Het
Akap13	T	A	7: 75,380,248 (GRCm39)	S2193T	probably damaging	Het
Anapc11	T	C	11: 120,496,203 (GRCm39)	V69A	probably benign	Het
Ankmy1	C	T	1: 92,823,912 (GRCm39)	R118Q	probably damaging	Het
Ankrd27	T	C	7: 35,337,478 (GRCm39)	S931P	probably benign	Het
Atp6v1c2	G	A	12: 17,338,169 (GRCm39)	R280C	probably damaging	Het
Bbs10	T	A	10: 111,135,913 (GRCm39)	I342N	probably damaging	Het
Calhm2	T	C	19: 47,121,389 (GRCm39)	D260G	possibly damaging	Het
Camk2a	A	G	18: 61,091,310 (GRCm39)	E264G	probably damaging	Het
Ccdc146	T	A	5: 21,524,543 (GRCm39)	M270L	probably benign	Het
Cdc16	A	G	8: 13,829,264 (GRCm39)	T517A	probably benign	Het
Ces1g	T	C	8: 94,057,821 (GRCm39)	H160R	probably benign	Het
Chst4	T	C	8: 110,757,026 (GRCm39)	N196S	probably damaging	Het
Ciz1	A	T	2: 32,257,479 (GRCm39)	N175Y	probably damaging	Het
Cyb5r4	G	A	9: 86,909,093 (GRCm39)	V57I	probably damaging	Het
Cyth3	A	G	5: 143,670,181 (GRCm39)		probably benign	Het
Def6	A	G	17: 28,439,154 (GRCm39)	E255G	probably damaging	Het
Dhtkd1	T	G	2: 5,916,681 (GRCm39)	Q665P	probably damaging	Het
Dsg3	A	C	18: 20,672,804 (GRCm39)	D825A	probably damaging	Het
Eif3m	T	C	2: 104,835,345 (GRCm39)	T242A	probably benign	Het
Emilin3	A	G	2: 160,751,737 (GRCm39)	F101L	probably benign	Het
Epha7	A	G	4: 28,935,700 (GRCm39)		probably null	Het
Fbxo45	A	T	16: 32,057,223 (GRCm39)	Y224N	probably damaging	Het
Fhod3	A	T	18: 25,223,161 (GRCm39)	M836L	possibly damaging	Het
Fut4	C	A	9: 14,662,506 (GRCm39)	V263F	probably damaging	Het
Ggt1	C	T	10: 75,415,104 (GRCm39)	T206M	probably benign	Het
Gls	T	C	1: 52,227,858 (GRCm39)	R79G	probably damaging	Het
Grhl1	T	C	12: 24,631,514 (GRCm39)	S156P	probably benign	Het
Ipo8	C	T	6: 148,676,540 (GRCm39)	S983N	probably benign	Het
Kcna7	C	T	7: 45,058,868 (GRCm39)	A385V	probably damaging	Het
Kpnb1	A	T	11: 97,075,916 (GRCm39)	L40Q	probably damaging	Het
Matn1	A	T	4: 130,677,417 (GRCm39)	S209C	probably damaging	Het
Mcc	A	G	18: 44,608,289 (GRCm39)	I501T	probably benign	Het
Mdp1	A	T	14: 55,896,832 (GRCm39)	F104L	probably damaging	Het
Mib2	A	T	4: 155,740,745 (GRCm39)	N626K	probably damaging	Het
Mrgprh	T	C	17: 13,095,843 (GRCm39)	S28P	possibly damaging	Het
Mup-ps23	T	A	4: 61,774,386 (GRCm39)		noncoding transcript	Het
Myh15	A	G	16: 49,003,322 (GRCm39)	T1794A	possibly damaging	Het
Myo18a	C	G	11: 77,711,868 (GRCm39)	P680A	probably benign	Het
Myom2	G	T	8: 15,148,419 (GRCm39)	D532Y	possibly damaging	Het
Ndufaf5	A	G	2: 140,012,801 (GRCm39)	N57S	probably benign	Het
Nectin3	C	T	16: 46,278,550 (GRCm39)	V282M	probably damaging	Het
Nup188	G	T	2: 30,221,000 (GRCm39)	D997Y	probably damaging	Het
Olfm3	T	C	3: 114,916,454 (GRCm39)	V462A	probably damaging	Het
Opcml	A	G	9: 28,724,694 (GRCm39)	H164R	possibly damaging	Het
Or14a259	A	T	7: 86,013,013 (GRCm39)	C177*	probably null	Het
Or4c120	A	T	2: 89,000,757 (GRCm39)	F266L	probably benign	Het
Or8u9	A	C	2: 86,002,050 (GRCm39)	F37C	probably damaging	Het
Pacrg	A	G	17: 10,622,347 (GRCm39)	I209T	probably damaging	Het
Pcf11	T	C	7: 92,310,423 (GRCm39)	M522V	probably benign	Het
Pck1	T	A	2: 172,995,183 (GRCm39)	M1K	probably null	Het
Pcm1	G	T	8: 41,729,148 (GRCm39)	E707*	probably null	Het
Pcsk5	G	A	19: 17,632,213 (GRCm39)	R318W	probably damaging	Het
Phf11d	A	T	14: 59,590,793 (GRCm39)	M188K	possibly damaging	Het
Ppip5k2	A	T	1: 97,668,262 (GRCm39)	C615*	probably null	Het
Prkdc	T	A	16: 15,609,791 (GRCm39)	S3132T	probably damaging	Het
Prl2c5	A	T	13: 13,357,609 (GRCm39)		probably benign	Het
Prpsap2	A	G	11: 61,631,826 (GRCm39)	I177T	possibly damaging	Het
Rad50	A	G	11: 53,541,346 (GRCm39)	S1297P	probably damaging	Het
Rasip1	T	A	7: 45,284,668 (GRCm39)	N678K	possibly damaging	Het
Rubcn	A	G	16: 32,656,350 (GRCm39)	S544P	probably damaging	Het
Rwdd2a	A	T	9: 86,456,453 (GRCm39)	T210S	possibly damaging	Het
Scd2	A	G	19: 44,291,479 (GRCm39)	D306G	probably damaging	Het
Sema3b	T	C	9: 107,480,117 (GRCm39)	N207S	probably benign	Het
Sf3b2	C	T	19: 5,324,852 (GRCm39)	D845N	probably damaging	Het
Sipa1l2	C	A	8: 126,191,149 (GRCm39)	C947F	probably damaging	Het
Slc12a1	A	T	2: 125,067,951 (GRCm39)	T1013S	probably damaging	Het
Slc18a2	A	T	19: 59,275,799 (GRCm39)	I461L	probably benign	Het
Slc1a6	C	A	10: 78,637,756 (GRCm39)	Y427*	probably null	Het
Slc30a4	A	T	2: 122,531,319 (GRCm39)	I231K	probably damaging	Het
Sos1	G	T	17: 80,761,192 (GRCm39)	A168D	probably damaging	Het
Spata31f1a	T	C	4: 42,851,161 (GRCm39)	I332V	probably benign	Het
Sptb	T	C	12: 76,668,145 (GRCm39)	S651G	probably benign	Het
Stk36	T	C	1: 74,672,779 (GRCm39)	L1007P	probably damaging	Het
Tek	A	T	4: 94,692,578 (GRCm39)	N229Y	probably damaging	Het
Tep1	A	G	14: 51,074,225 (GRCm39)	F1887L	possibly damaging	Het
Tet1	A	T	10: 62,713,988 (GRCm39)	C602*	probably null	Het
Trim5	T	C	7: 103,914,891 (GRCm39)	I393V	probably benign	Het
Trpm6	A	G	19: 18,830,951 (GRCm39)	E1272G	probably benign	Het
Ttc21b	A	T	2: 66,018,670 (GRCm39)	Y1246N	probably damaging	Het
Ttll3	T	A	6: 113,375,738 (GRCm39)	L151H	probably damaging	Het
U2surp	C	T	9: 95,366,496 (GRCm39)	V470I	probably benign	Het
Ubr1	A	T	2: 120,777,138 (GRCm39)	Y276N	probably benign	Het
Uggt1	A	G	1: 36,218,751 (GRCm39)	S59P	probably benign	Het
Unc45a	T	C	7: 79,976,092 (GRCm39)	T796A	probably damaging	Het
Unc5b	C	A	10: 60,614,719 (GRCm39)	V193F	possibly damaging	Het
Upp1	G	T	11: 9,079,590 (GRCm39)	M50I	probably benign	Het
Vps18	C	T	2: 119,124,386 (GRCm39)	R438C	probably damaging	Het
Zfp715	T	C	7: 42,948,760 (GRCm39)	Y400C	possibly damaging	Het
Zfp955b	T	C	17: 33,521,496 (GRCm39)	Y322H	probably benign	Het

Other mutations in Tnfrsf19

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00943:Tnfrsf19	APN	14	61,261,631 (GRCm39)	missense	possibly damaging	0.53
IGL01564:Tnfrsf19	APN	14	61,212,058 (GRCm39)	missense	possibly damaging	0.85
IGL01878:Tnfrsf19	APN	14	61,234,093 (GRCm39)	missense	probably damaging	0.98
IGL02220:Tnfrsf19	APN	14	61,210,941 (GRCm39)	unclassified	probably benign
IGL02378:Tnfrsf19	APN	14	61,208,451 (GRCm39)	missense	probably benign	0.00
IGL02546:Tnfrsf19	APN	14	61,210,987 (GRCm39)	missense	possibly damaging	0.86
IGL02583:Tnfrsf19	APN	14	61,261,659 (GRCm39)	missense	probably damaging	0.98
IGL03037:Tnfrsf19	APN	14	61,261,721 (GRCm39)	missense	possibly damaging	0.83
IGL03221:Tnfrsf19	APN	14	61,262,227 (GRCm39)	missense	probably benign	0.06
R0241:Tnfrsf19	UTSW	14	61,211,041 (GRCm39)	missense	possibly damaging	0.93
R1521:Tnfrsf19	UTSW	14	61,242,555 (GRCm39)	missense	probably damaging	0.99
R3038:Tnfrsf19	UTSW	14	61,209,512 (GRCm39)	missense	probably benign
R4346:Tnfrsf19	UTSW	14	61,209,429 (GRCm39)	critical splice donor site	probably null
R4997:Tnfrsf19	UTSW	14	61,208,658 (GRCm39)	missense	probably benign
R5756:Tnfrsf19	UTSW	14	61,262,224 (GRCm39)	missense	probably benign
R5869:Tnfrsf19	UTSW	14	61,208,627 (GRCm39)	missense	possibly damaging	0.70
R6110:Tnfrsf19	UTSW	14	61,208,588 (GRCm39)	missense	probably benign	0.08
R7047:Tnfrsf19	UTSW	14	61,242,667 (GRCm39)	nonsense	probably null
R7266:Tnfrsf19	UTSW	14	61,212,147 (GRCm39)	missense	possibly damaging	0.91
R7491:Tnfrsf19	UTSW	14	61,242,654 (GRCm39)	missense	possibly damaging	0.75
R7729:Tnfrsf19	UTSW	14	61,212,183 (GRCm39)	missense	possibly damaging	0.70
R7936:Tnfrsf19	UTSW	14	61,208,382 (GRCm39)	missense	probably benign	0.22
R8358:Tnfrsf19	UTSW	14	61,208,634 (GRCm39)	missense	probably benign	0.25
R8535:Tnfrsf19	UTSW	14	61,208,417 (GRCm39)	missense	probably benign	0.25
R8693:Tnfrsf19	UTSW	14	61,208,451 (GRCm39)	missense	probably benign
R9028:Tnfrsf19	UTSW	14	61,242,650 (GRCm39)	missense	probably benign	0.26
R9468:Tnfrsf19	UTSW	14	61,261,623 (GRCm39)	missense	possibly damaging	0.93

Predicted Primers

PCR Primer
(F):5'- TACTGGTTATCAGTGACCCCTGCG -3'
(R):5'- TGGGTTAAGTCATCTGTCCGTCCTC -3'

Sequencing Primer
(F):5'- CTCTTTTAGGTTCAAAGAAGTCATTG -3'
(R):5'- ACACCAGTGTGCGGTTC -3'

Posted On

2013-08-08