Incidental Mutation 'R0234:Vmn2r27'
ID |
66006 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn2r27
|
Ensembl Gene |
ENSMUSG00000072778 |
Gene Name |
vomeronasal 2, receptor27 |
Synonyms |
EG232367 |
MMRRC Submission |
038475-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.060)
|
Stock # |
R0234 (G1)
|
Quality Score |
97 |
Status
|
Not validated
|
Chromosome |
6 |
Chromosomal Location |
124168555-124208743 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to A
at 124208578 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Threonine to Serine
at position 56
(T56S)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000098528
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000100968]
|
AlphaFold |
D3YUK6 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000100968
AA Change: T56S
PolyPhen 2
Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
|
SMART Domains |
Protein: ENSMUSP00000098528 Gene: ENSMUSG00000072778 AA Change: T56S
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
Pfam:ANF_receptor
|
81 |
475 |
1.1e-27 |
PFAM |
Pfam:NCD3G
|
519 |
570 |
1.3e-18 |
PFAM |
Pfam:7tm_3
|
603 |
838 |
2.6e-50 |
PFAM |
|
Meta Mutation Damage Score |
0.0898 |
Coding Region Coverage |
- 1x: 98.8%
- 3x: 97.7%
- 10x: 94.1%
- 20x: 83.3%
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 71 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
A3galt2 |
A |
G |
4: 128,660,941 (GRCm39) |
R197G |
possibly damaging |
Het |
Acacb |
A |
T |
5: 114,347,878 (GRCm39) |
H983L |
probably damaging |
Het |
Adal |
T |
A |
2: 120,978,798 (GRCm39) |
D139E |
probably benign |
Het |
Adam6b |
G |
A |
12: 113,454,230 (GRCm39) |
R349H |
probably damaging |
Het |
Agap1 |
A |
G |
1: 89,598,934 (GRCm39) |
K331E |
probably damaging |
Het |
B3gat1 |
A |
G |
9: 26,667,377 (GRCm39) |
E203G |
probably damaging |
Het |
Bsn |
T |
C |
9: 107,993,595 (GRCm39) |
E719G |
possibly damaging |
Het |
Cap2 |
G |
C |
13: 46,791,498 (GRCm39) |
|
probably null |
Het |
Ccni |
A |
G |
5: 93,350,186 (GRCm39) |
V31A |
probably benign |
Het |
Cdcp3 |
T |
A |
7: 130,796,032 (GRCm39) |
|
probably null |
Het |
Clns1a |
T |
A |
7: 97,363,239 (GRCm39) |
Y204N |
possibly damaging |
Het |
Cox11 |
C |
T |
11: 90,535,326 (GRCm39) |
T259I |
probably damaging |
Het |
Dsp |
A |
G |
13: 38,371,869 (GRCm39) |
N940S |
probably benign |
Het |
Erbb2 |
T |
C |
11: 98,327,265 (GRCm39) |
V1181A |
probably benign |
Het |
Exoc4 |
T |
C |
6: 33,839,022 (GRCm39) |
V686A |
possibly damaging |
Het |
F830045P16Rik |
A |
G |
2: 129,305,384 (GRCm39) |
V330A |
possibly damaging |
Het |
Fbf1 |
A |
C |
11: 116,045,860 (GRCm39) |
F245V |
probably damaging |
Het |
Fut10 |
T |
A |
8: 31,726,225 (GRCm39) |
F327I |
probably damaging |
Het |
Galnt1 |
C |
T |
18: 24,387,690 (GRCm39) |
P144S |
probably damaging |
Het |
Garin4 |
T |
C |
1: 190,895,105 (GRCm39) |
S513G |
probably benign |
Het |
Ghrhr |
A |
T |
6: 55,356,171 (GRCm39) |
D88V |
possibly damaging |
Het |
Greb1l |
T |
A |
18: 10,560,331 (GRCm39) |
C1864S |
probably damaging |
Het |
H1f2 |
T |
C |
13: 23,923,106 (GRCm39) |
I92T |
probably benign |
Het |
Hps1 |
T |
C |
19: 42,750,992 (GRCm39) |
E336G |
probably damaging |
Het |
Irgc |
C |
A |
7: 24,132,753 (GRCm39) |
E21D |
possibly damaging |
Het |
Itsn1 |
A |
T |
16: 91,625,168 (GRCm39) |
R590* |
probably null |
Het |
Katnip |
T |
C |
7: 125,394,557 (GRCm39) |
V211A |
probably benign |
Het |
Lmln |
T |
C |
16: 32,886,694 (GRCm39) |
V67A |
probably damaging |
Het |
Lsm14a |
T |
C |
7: 34,065,042 (GRCm39) |
Q179R |
probably damaging |
Het |
Ltbr |
A |
C |
6: 125,289,836 (GRCm39) |
D119E |
probably benign |
Het |
Mrc1 |
A |
G |
2: 14,284,705 (GRCm39) |
T565A |
possibly damaging |
Het |
Muc6 |
A |
C |
7: 141,235,939 (GRCm39) |
N473K |
possibly damaging |
Het |
Myocd |
A |
T |
11: 65,078,066 (GRCm39) |
D448E |
probably benign |
Het |
Neil2 |
T |
A |
14: 63,420,975 (GRCm39) |
I239F |
probably damaging |
Het |
Npnt |
A |
G |
3: 132,620,175 (GRCm39) |
F123S |
possibly damaging |
Het |
Or2g25 |
T |
A |
17: 37,970,997 (GRCm39) |
I76F |
probably damaging |
Het |
Or4f15 |
T |
C |
2: 111,813,645 (GRCm39) |
Y258C |
probably damaging |
Het |
Or52x1 |
C |
A |
7: 104,852,821 (GRCm39) |
C243F |
probably damaging |
Het |
Or56a5 |
T |
C |
7: 104,793,281 (GRCm39) |
D73G |
probably damaging |
Het |
Or5d37 |
T |
A |
2: 87,923,366 (GRCm39) |
R305* |
probably null |
Het |
Or8d1b |
A |
C |
9: 38,887,547 (GRCm39) |
|
probably null |
Het |
Or9i2 |
C |
T |
19: 13,815,902 (GRCm39) |
V212M |
possibly damaging |
Het |
Pcnx3 |
T |
C |
19: 5,722,646 (GRCm39) |
T941A |
probably benign |
Het |
Pitrm1 |
C |
A |
13: 6,625,115 (GRCm39) |
Y864* |
probably null |
Het |
Plcb4 |
T |
C |
2: 135,823,995 (GRCm39) |
I844T |
probably benign |
Het |
Ppp1r3b |
T |
A |
8: 35,851,655 (GRCm39) |
F165I |
probably damaging |
Het |
Prr5 |
T |
A |
15: 84,587,322 (GRCm39) |
F357L |
probably damaging |
Het |
Rbm15b |
T |
C |
9: 106,762,563 (GRCm39) |
Y535C |
probably damaging |
Het |
Rbp3 |
A |
T |
14: 33,677,858 (GRCm39) |
E602V |
probably damaging |
Het |
Rimklb |
T |
C |
6: 122,433,292 (GRCm39) |
N343S |
probably benign |
Het |
Rrp12 |
A |
G |
19: 41,860,199 (GRCm39) |
L1008P |
probably damaging |
Het |
Sec63 |
C |
T |
10: 42,674,794 (GRCm39) |
R226C |
probably damaging |
Het |
Sirpa |
T |
C |
2: 129,457,388 (GRCm39) |
V154A |
probably damaging |
Het |
Slc22a23 |
G |
A |
13: 34,367,244 (GRCm39) |
T588I |
probably damaging |
Het |
Slc22a27 |
C |
A |
19: 7,904,156 (GRCm39) |
|
probably benign |
Het |
Slc4a4 |
A |
C |
5: 89,304,195 (GRCm39) |
H502P |
possibly damaging |
Het |
Slc5a5 |
A |
T |
8: 71,342,277 (GRCm39) |
M258K |
probably damaging |
Het |
Spry4 |
A |
G |
18: 38,723,142 (GRCm39) |
I207T |
possibly damaging |
Het |
Stk11ip |
A |
G |
1: 75,505,711 (GRCm39) |
D460G |
possibly damaging |
Het |
Syn3 |
T |
A |
10: 86,284,750 (GRCm39) |
I117F |
possibly damaging |
Het |
Tead4 |
C |
T |
6: 128,220,365 (GRCm39) |
A224T |
probably damaging |
Het |
Tmtc3 |
A |
T |
10: 100,286,184 (GRCm39) |
N546K |
probably benign |
Het |
Tnn |
T |
A |
1: 159,916,036 (GRCm39) |
H1227L |
probably damaging |
Het |
Tor2a |
G |
A |
2: 32,648,716 (GRCm39) |
G62D |
probably damaging |
Het |
Trf |
T |
C |
9: 103,104,078 (GRCm39) |
|
probably null |
Het |
Ubr5 |
T |
C |
15: 37,968,737 (GRCm39) |
T2727A |
probably damaging |
Het |
Wipf3 |
T |
G |
6: 54,473,486 (GRCm39) |
L458R |
probably damaging |
Het |
Zfp236 |
T |
C |
18: 82,648,119 (GRCm39) |
K966R |
probably damaging |
Het |
Zfp27 |
T |
A |
7: 29,593,532 (GRCm39) |
H811L |
possibly damaging |
Het |
Zfp366 |
A |
G |
13: 99,370,768 (GRCm39) |
H496R |
probably damaging |
Het |
Zfp467 |
A |
T |
6: 48,415,689 (GRCm39) |
V321E |
probably damaging |
Het |
|
Other mutations in Vmn2r27 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01285:Vmn2r27
|
APN |
6 |
124,169,370 (GRCm39) |
missense |
possibly damaging |
0.86 |
IGL01388:Vmn2r27
|
APN |
6 |
124,200,791 (GRCm39) |
missense |
possibly damaging |
0.55 |
IGL01923:Vmn2r27
|
APN |
6 |
124,177,484 (GRCm39) |
missense |
probably benign |
0.20 |
IGL01954:Vmn2r27
|
APN |
6 |
124,169,207 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02105:Vmn2r27
|
APN |
6 |
124,174,308 (GRCm39) |
splice site |
probably benign |
|
IGL02586:Vmn2r27
|
APN |
6 |
124,201,434 (GRCm39) |
nonsense |
probably null |
|
IGL03130:Vmn2r27
|
APN |
6 |
124,169,276 (GRCm39) |
missense |
possibly damaging |
0.82 |
IGL03330:Vmn2r27
|
APN |
6 |
124,207,139 (GRCm39) |
nonsense |
probably null |
|
R0124:Vmn2r27
|
UTSW |
6 |
124,208,578 (GRCm39) |
missense |
probably benign |
|
R0234:Vmn2r27
|
UTSW |
6 |
124,208,578 (GRCm39) |
missense |
probably benign |
|
R0384:Vmn2r27
|
UTSW |
6 |
124,200,871 (GRCm39) |
missense |
probably benign |
0.01 |
R0582:Vmn2r27
|
UTSW |
6 |
124,201,249 (GRCm39) |
missense |
probably benign |
0.02 |
R0733:Vmn2r27
|
UTSW |
6 |
124,169,147 (GRCm39) |
missense |
probably benign |
0.18 |
R0738:Vmn2r27
|
UTSW |
6 |
124,200,661 (GRCm39) |
missense |
possibly damaging |
0.48 |
R0835:Vmn2r27
|
UTSW |
6 |
124,177,583 (GRCm39) |
missense |
probably damaging |
0.99 |
R1183:Vmn2r27
|
UTSW |
6 |
124,177,491 (GRCm39) |
missense |
probably benign |
|
R1401:Vmn2r27
|
UTSW |
6 |
124,168,591 (GRCm39) |
nonsense |
probably null |
|
R1484:Vmn2r27
|
UTSW |
6 |
124,177,474 (GRCm39) |
missense |
probably damaging |
0.96 |
R1536:Vmn2r27
|
UTSW |
6 |
124,177,649 (GRCm39) |
missense |
probably damaging |
1.00 |
R1539:Vmn2r27
|
UTSW |
6 |
124,168,730 (GRCm39) |
missense |
probably damaging |
1.00 |
R1565:Vmn2r27
|
UTSW |
6 |
124,208,593 (GRCm39) |
missense |
probably benign |
|
R1595:Vmn2r27
|
UTSW |
6 |
124,208,574 (GRCm39) |
missense |
probably benign |
0.00 |
R1614:Vmn2r27
|
UTSW |
6 |
124,200,893 (GRCm39) |
missense |
probably benign |
0.01 |
R1742:Vmn2r27
|
UTSW |
6 |
124,177,636 (GRCm39) |
missense |
possibly damaging |
0.48 |
R1816:Vmn2r27
|
UTSW |
6 |
124,207,330 (GRCm39) |
nonsense |
probably null |
|
R1822:Vmn2r27
|
UTSW |
6 |
124,208,593 (GRCm39) |
missense |
probably benign |
|
R1824:Vmn2r27
|
UTSW |
6 |
124,208,593 (GRCm39) |
missense |
probably benign |
|
R1870:Vmn2r27
|
UTSW |
6 |
124,201,170 (GRCm39) |
missense |
probably benign |
0.11 |
R1942:Vmn2r27
|
UTSW |
6 |
124,200,722 (GRCm39) |
missense |
probably damaging |
1.00 |
R1962:Vmn2r27
|
UTSW |
6 |
124,200,793 (GRCm39) |
missense |
possibly damaging |
0.70 |
R2069:Vmn2r27
|
UTSW |
6 |
124,201,442 (GRCm39) |
missense |
probably damaging |
1.00 |
R2075:Vmn2r27
|
UTSW |
6 |
124,177,510 (GRCm39) |
missense |
possibly damaging |
0.85 |
R2379:Vmn2r27
|
UTSW |
6 |
124,201,342 (GRCm39) |
missense |
possibly damaging |
0.89 |
R3748:Vmn2r27
|
UTSW |
6 |
124,207,351 (GRCm39) |
missense |
probably benign |
0.35 |
R4384:Vmn2r27
|
UTSW |
6 |
124,201,115 (GRCm39) |
missense |
probably benign |
0.05 |
R4392:Vmn2r27
|
UTSW |
6 |
124,207,135 (GRCm39) |
missense |
probably benign |
0.01 |
R4758:Vmn2r27
|
UTSW |
6 |
124,208,596 (GRCm39) |
missense |
possibly damaging |
0.87 |
R5018:Vmn2r27
|
UTSW |
6 |
124,201,141 (GRCm39) |
missense |
probably benign |
0.02 |
R5235:Vmn2r27
|
UTSW |
6 |
124,169,013 (GRCm39) |
missense |
probably damaging |
0.99 |
R5718:Vmn2r27
|
UTSW |
6 |
124,169,103 (GRCm39) |
missense |
possibly damaging |
0.66 |
R5859:Vmn2r27
|
UTSW |
6 |
124,177,647 (GRCm39) |
missense |
probably damaging |
1.00 |
R5958:Vmn2r27
|
UTSW |
6 |
124,208,686 (GRCm39) |
missense |
probably benign |
0.00 |
R6044:Vmn2r27
|
UTSW |
6 |
124,208,731 (GRCm39) |
missense |
probably benign |
|
R6086:Vmn2r27
|
UTSW |
6 |
124,168,958 (GRCm39) |
missense |
probably damaging |
1.00 |
R6396:Vmn2r27
|
UTSW |
6 |
124,201,125 (GRCm39) |
nonsense |
probably null |
|
R6546:Vmn2r27
|
UTSW |
6 |
124,169,369 (GRCm39) |
missense |
possibly damaging |
0.49 |
R6746:Vmn2r27
|
UTSW |
6 |
124,177,552 (GRCm39) |
missense |
possibly damaging |
0.47 |
R6976:Vmn2r27
|
UTSW |
6 |
124,201,312 (GRCm39) |
nonsense |
probably null |
|
R7091:Vmn2r27
|
UTSW |
6 |
124,200,904 (GRCm39) |
missense |
possibly damaging |
0.85 |
R7145:Vmn2r27
|
UTSW |
6 |
124,168,711 (GRCm39) |
missense |
probably benign |
|
R7176:Vmn2r27
|
UTSW |
6 |
124,168,995 (GRCm39) |
missense |
probably benign |
0.01 |
R7382:Vmn2r27
|
UTSW |
6 |
124,174,276 (GRCm39) |
missense |
probably damaging |
1.00 |
R7482:Vmn2r27
|
UTSW |
6 |
124,201,220 (GRCm39) |
missense |
probably damaging |
1.00 |
R7853:Vmn2r27
|
UTSW |
6 |
124,168,980 (GRCm39) |
missense |
probably damaging |
1.00 |
R7859:Vmn2r27
|
UTSW |
6 |
124,201,201 (GRCm39) |
missense |
probably benign |
0.00 |
R7959:Vmn2r27
|
UTSW |
6 |
124,169,040 (GRCm39) |
missense |
probably benign |
|
R8266:Vmn2r27
|
UTSW |
6 |
124,168,937 (GRCm39) |
missense |
probably benign |
0.00 |
R8353:Vmn2r27
|
UTSW |
6 |
124,169,404 (GRCm39) |
missense |
probably damaging |
0.99 |
R8394:Vmn2r27
|
UTSW |
6 |
124,168,776 (GRCm39) |
missense |
possibly damaging |
0.71 |
R8463:Vmn2r27
|
UTSW |
6 |
124,169,168 (GRCm39) |
missense |
probably damaging |
1.00 |
R8477:Vmn2r27
|
UTSW |
6 |
124,201,200 (GRCm39) |
missense |
probably benign |
0.11 |
R8705:Vmn2r27
|
UTSW |
6 |
124,207,188 (GRCm39) |
missense |
probably damaging |
1.00 |
R8752:Vmn2r27
|
UTSW |
6 |
124,201,018 (GRCm39) |
missense |
probably benign |
0.00 |
R9109:Vmn2r27
|
UTSW |
6 |
124,174,224 (GRCm39) |
missense |
possibly damaging |
0.95 |
R9140:Vmn2r27
|
UTSW |
6 |
124,169,207 (GRCm39) |
missense |
probably damaging |
1.00 |
R9157:Vmn2r27
|
UTSW |
6 |
124,201,244 (GRCm39) |
missense |
probably benign |
0.09 |
R9431:Vmn2r27
|
UTSW |
6 |
124,168,856 (GRCm39) |
missense |
probably damaging |
1.00 |
R9477:Vmn2r27
|
UTSW |
6 |
124,168,910 (GRCm39) |
missense |
probably damaging |
0.99 |
R9758:Vmn2r27
|
UTSW |
6 |
124,168,637 (GRCm39) |
missense |
possibly damaging |
0.89 |
Z1177:Vmn2r27
|
UTSW |
6 |
124,168,860 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Predicted Primers |
|
Posted On |
2013-08-19 |