Incidental Mutation 'R0211:Irf8'
ID |
66409 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Irf8
|
Ensembl Gene |
ENSMUSG00000041515 |
Gene Name |
interferon regulatory factor 8 |
Synonyms |
ICSBP, Myls, IRF-8, Icsbp1 |
MMRRC Submission |
038462-MU
|
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
R0211 (G1)
|
Quality Score |
118 |
Status
|
Not validated
|
Chromosome |
8 |
Chromosomal Location |
121463097-121483433 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to T
at 121466714 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Aspartic acid to Valine
at position 53
(D53V)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000125443
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000047737]
[ENSMUST00000127664]
[ENSMUST00000160943]
[ENSMUST00000162001]
[ENSMUST00000162658]
|
AlphaFold |
P23611 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000047737
AA Change: D53V
PolyPhen 2
Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
|
SMART Domains |
Protein: ENSMUSP00000040245 Gene: ENSMUSG00000041515 AA Change: D53V
Domain | Start | End | E-Value | Type |
IRF
|
3 |
115 |
8.69e-65 |
SMART |
Blast:IRF
|
129 |
176 |
7e-11 |
BLAST |
IRF-3
|
202 |
380 |
2.63e-78 |
SMART |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000127664
|
SMART Domains |
Protein: ENSMUSP00000118564 Gene: ENSMUSG00000092329
Domain | Start | End | E-Value | Type |
Pfam:Glycos_transf_2
|
104 |
287 |
7.4e-31 |
PFAM |
Pfam:Glyco_transf_7C
|
261 |
331 |
4.9e-8 |
PFAM |
RICIN
|
406 |
531 |
9.28e-27 |
SMART |
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000160943
AA Change: D53V
PolyPhen 2
Score 0.852 (Sensitivity: 0.83; Specificity: 0.93)
|
SMART Domains |
Protein: ENSMUSP00000125447 Gene: ENSMUSG00000041515 AA Change: D53V
Domain | Start | End | E-Value | Type |
IRF
|
3 |
85 |
2.54e-16 |
SMART |
IRF-3
|
111 |
289 |
2.63e-78 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000162001
AA Change: D53V
PolyPhen 2
Score 0.996 (Sensitivity: 0.55; Specificity: 0.98)
|
SMART Domains |
Protein: ENSMUSP00000125029 Gene: ENSMUSG00000041515 AA Change: D53V
Domain | Start | End | E-Value | Type |
IRF
|
3 |
115 |
8.69e-65 |
SMART |
Blast:IRF
|
129 |
176 |
7e-11 |
BLAST |
IRF-3
|
202 |
380 |
2.63e-78 |
SMART |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000162658
AA Change: D53V
PolyPhen 2
Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
|
SMART Domains |
Protein: ENSMUSP00000125443 Gene: ENSMUSG00000041515 AA Change: D53V
Domain | Start | End | E-Value | Type |
IRF
|
3 |
85 |
2.54e-16 |
SMART |
Pfam:IRF-3
|
111 |
151 |
4.7e-9 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000162775
|
Coding Region Coverage |
- 1x: 96.9%
- 3x: 92.1%
- 10x: 58.4%
- 20x: 15.8%
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: The protein encoded by this gene is a transcription factor that belongs to the interferon regulatory factor family. Proteins belonging to this family have a DNA binding domain at the amino terminus that contains five well-conserved tryptophan-rich repeats. This domain recognizes DNA sequences similar to the interferon-stimulated response element. The protein encoded by this gene promotes or suppresses lineage-specific genes to regulate the differentation of lymphoid and myeloid lineage cells. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2014] PHENOTYPE: Homozygotes for a targeted null mutation exhibit increased incidence of viral infections, shortened life span, deregulated hematopoiesis, and hematological neoplasias. Heterozygotes show similar, but milder, phenotypes. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 45 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
2700049A03Rik |
T |
C |
12: 71,262,870 (GRCm39) |
L1401P |
possibly damaging |
Het |
Adgrf1 |
T |
C |
17: 43,607,581 (GRCm39) |
L100P |
probably damaging |
Het |
Akt1 |
T |
C |
12: 112,621,576 (GRCm39) |
T407A |
probably damaging |
Het |
Arnt |
T |
A |
3: 95,383,460 (GRCm39) |
M242K |
probably damaging |
Het |
Atad5 |
T |
G |
11: 79,986,473 (GRCm39) |
V520G |
probably benign |
Het |
Cbr2 |
T |
A |
11: 120,621,614 (GRCm39) |
I88L |
probably benign |
Het |
Ccdc51 |
T |
C |
9: 108,918,441 (GRCm39) |
M10T |
probably benign |
Het |
Cryba1 |
T |
A |
11: 77,609,693 (GRCm39) |
Y179F |
probably damaging |
Het |
Dcaf4 |
T |
A |
12: 83,582,735 (GRCm39) |
F277I |
probably damaging |
Het |
Ddost |
G |
A |
4: 138,036,913 (GRCm39) |
V159M |
probably damaging |
Het |
Dnase2a |
A |
G |
8: 85,635,417 (GRCm39) |
|
probably benign |
Het |
Efcc1 |
A |
T |
6: 87,726,136 (GRCm39) |
T312S |
probably benign |
Het |
Ermard |
A |
T |
17: 15,242,205 (GRCm39) |
Q127L |
probably damaging |
Het |
Ggnbp2 |
G |
A |
11: 84,731,139 (GRCm39) |
T325M |
probably damaging |
Het |
H2-T5 |
T |
C |
17: 36,478,899 (GRCm39) |
T117A |
probably damaging |
Het |
Ift74 |
C |
T |
4: 94,567,492 (GRCm39) |
T395I |
probably benign |
Het |
Itgad |
A |
G |
7: 127,803,813 (GRCm39) |
Y69C |
probably damaging |
Het |
Lpin3 |
A |
T |
2: 160,740,601 (GRCm39) |
D382V |
probably damaging |
Het |
Map4k3 |
C |
T |
17: 80,952,270 (GRCm39) |
A179T |
probably damaging |
Het |
Nck1 |
A |
T |
9: 100,379,820 (GRCm39) |
W144R |
probably damaging |
Het |
Nin |
T |
G |
12: 70,061,649 (GRCm39) |
T2072P |
probably damaging |
Het |
Nop2 |
T |
G |
6: 125,118,307 (GRCm39) |
L529R |
probably damaging |
Het |
Nynrin |
T |
C |
14: 56,109,255 (GRCm39) |
F1454S |
probably benign |
Het |
Or10ak7 |
T |
A |
4: 118,791,467 (GRCm39) |
M191L |
probably benign |
Het |
Or5b101 |
T |
C |
19: 13,005,646 (GRCm39) |
T16A |
possibly damaging |
Het |
Or8j3c |
A |
C |
2: 86,253,451 (GRCm39) |
S190A |
probably damaging |
Het |
Pcdhb10 |
A |
T |
18: 37,547,059 (GRCm39) |
M712L |
probably benign |
Het |
Pcx |
C |
T |
19: 4,670,227 (GRCm39) |
A935V |
probably damaging |
Het |
Pdzd7 |
A |
G |
19: 45,022,106 (GRCm39) |
V514A |
possibly damaging |
Het |
Plxnb1 |
T |
A |
9: 108,932,731 (GRCm39) |
Y568* |
probably null |
Het |
Rgr |
T |
G |
14: 36,768,925 (GRCm39) |
T37P |
probably damaging |
Het |
Rpusd2 |
A |
G |
2: 118,868,893 (GRCm39) |
S439G |
probably benign |
Het |
Slc6a21 |
A |
C |
7: 44,937,667 (GRCm39) |
T653P |
possibly damaging |
Het |
Spdef |
C |
T |
17: 27,933,894 (GRCm39) |
R309H |
probably damaging |
Het |
Srp68 |
A |
T |
11: 116,156,377 (GRCm39) |
Y84N |
probably damaging |
Het |
Tmem63b |
T |
A |
17: 45,972,839 (GRCm39) |
M652L |
probably benign |
Het |
Tnk1 |
A |
G |
11: 69,746,007 (GRCm39) |
V306A |
probably damaging |
Het |
Tnnc2 |
T |
A |
2: 164,619,404 (GRCm39) |
I147F |
probably damaging |
Het |
Tyw3 |
T |
C |
3: 154,293,132 (GRCm39) |
N181S |
probably damaging |
Het |
Unc79 |
T |
A |
12: 103,039,051 (GRCm39) |
S682T |
probably benign |
Het |
Wasl |
G |
T |
6: 24,633,892 (GRCm39) |
A124E |
probably damaging |
Het |
Zfp287 |
T |
C |
11: 62,605,743 (GRCm39) |
H388R |
probably damaging |
Het |
Zfp335 |
T |
C |
2: 164,749,612 (GRCm39) |
T262A |
probably damaging |
Het |
Zfp457 |
C |
G |
13: 67,441,211 (GRCm39) |
G359R |
probably benign |
Het |
Zfp872 |
T |
A |
9: 22,111,469 (GRCm39) |
I316N |
probably damaging |
Het |
|
Other mutations in Irf8 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01314:Irf8
|
APN |
8 |
121,480,119 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02944:Irf8
|
APN |
8 |
121,481,864 (GRCm39) |
missense |
probably benign |
0.00 |
IGL03024:Irf8
|
APN |
8 |
121,480,097 (GRCm39) |
missense |
probably damaging |
0.98 |
gemini
|
UTSW |
8 |
121,470,622 (GRCm39) |
nonsense |
probably null |
|
gemini2
|
UTSW |
8 |
121,480,446 (GRCm39) |
missense |
probably damaging |
0.97 |
glenn
|
UTSW |
8 |
121,466,581 (GRCm39) |
missense |
probably damaging |
1.00 |
ANU74:Irf8
|
UTSW |
8 |
121,466,608 (GRCm39) |
missense |
possibly damaging |
0.75 |
R0211:Irf8
|
UTSW |
8 |
121,466,714 (GRCm39) |
missense |
probably damaging |
1.00 |
R0840:Irf8
|
UTSW |
8 |
121,480,220 (GRCm39) |
missense |
probably benign |
0.06 |
R1622:Irf8
|
UTSW |
8 |
121,466,561 (GRCm39) |
missense |
possibly damaging |
0.86 |
R1715:Irf8
|
UTSW |
8 |
121,481,127 (GRCm39) |
missense |
probably damaging |
0.98 |
R2274:Irf8
|
UTSW |
8 |
121,480,266 (GRCm39) |
missense |
probably damaging |
0.99 |
R2875:Irf8
|
UTSW |
8 |
121,481,202 (GRCm39) |
missense |
probably damaging |
1.00 |
R3743:Irf8
|
UTSW |
8 |
121,480,310 (GRCm39) |
missense |
probably damaging |
1.00 |
R4209:Irf8
|
UTSW |
8 |
121,480,208 (GRCm39) |
missense |
probably damaging |
0.99 |
R4729:Irf8
|
UTSW |
8 |
121,480,178 (GRCm39) |
missense |
probably damaging |
0.99 |
R6343:Irf8
|
UTSW |
8 |
121,480,446 (GRCm39) |
missense |
probably damaging |
0.97 |
R6950:Irf8
|
UTSW |
8 |
121,481,864 (GRCm39) |
missense |
probably benign |
0.00 |
R7051:Irf8
|
UTSW |
8 |
121,466,581 (GRCm39) |
missense |
probably damaging |
1.00 |
R7052:Irf8
|
UTSW |
8 |
121,466,581 (GRCm39) |
missense |
probably damaging |
1.00 |
R7249:Irf8
|
UTSW |
8 |
121,466,571 (GRCm39) |
missense |
possibly damaging |
0.92 |
R9153:Irf8
|
UTSW |
8 |
121,480,400 (GRCm39) |
missense |
probably benign |
|
R9613:Irf8
|
UTSW |
8 |
121,481,207 (GRCm39) |
missense |
probably benign |
0.00 |
|
Predicted Primers |
|
Posted On |
2013-08-19 |