Incidental Mutation 'R0508:Pdss2'
ID 66980
Institutional Source Beutler Lab
Gene Symbol Pdss2
Ensembl Gene ENSMUSG00000038240
Gene Name prenyl (solanesyl) diphosphate synthase, subunit 2
Synonyms 5430420P03Rik, kd, PLMP, mDLP1
MMRRC Submission 038703-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R0508 (G1)
Quality Score 217
Status Validated
Chromosome 10
Chromosomal Location 43097482-43340878 bp(+) (GRCm39)
Type of Mutation small deletion (1 aa in frame mutation)
DNA Base Change (assembly) CGGAG to CG at 43097927 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000124046 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000095725] [ENSMUST00000159139] [ENSMUST00000160823]
AlphaFold Q33DR3
Predicted Effect probably benign
Transcript: ENSMUST00000095725
SMART Domains Protein: ENSMUSP00000093393
Gene: ENSMUSG00000038240

DomainStartEndE-ValueType
low complexity region 2 18 N/A INTRINSIC
low complexity region 32 46 N/A INTRINSIC
Pfam:polyprenyl_synt 106 324 9e-20 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000159139
SMART Domains Protein: ENSMUSP00000124864
Gene: ENSMUSG00000038240

DomainStartEndE-ValueType
low complexity region 2 18 N/A INTRINSIC
low complexity region 32 46 N/A INTRINSIC
Pfam:polyprenyl_synt 103 323 7.9e-15 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000160108
Predicted Effect probably benign
Transcript: ENSMUST00000160823
SMART Domains Protein: ENSMUSP00000124046
Gene: ENSMUSG00000038240

DomainStartEndE-ValueType
low complexity region 2 18 N/A INTRINSIC
low complexity region 32 46 N/A INTRINSIC
Pfam:polyprenyl_synt 103 319 7.4e-15 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000162758
Meta Mutation Damage Score 0.0898 question?
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.3%
  • 10x: 96.1%
  • 20x: 92.0%
Validation Efficiency 99% (67/68)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an enzyme that synthesizes the prenyl side-chain of coenzyme Q, or ubiquinone, one of the key elements in the respiratory chain. The gene product catalyzes the formation of all trans-polyprenyl pyrophosphates from isopentyl diphosphate in the assembly of polyisoprenoid side chains, the first step in coenzyme Q biosynthesis. Defects in this gene are a cause of coenzyme Q10 deficiency.[provided by RefSeq, Oct 2009]
PHENOTYPE: Mutations in this gene result in renal abnormalities leading to early death. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 68 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2700049A03Rik T C 12: 71,211,162 (GRCm39) L632P probably damaging Het
4833439L19Rik A G 13: 54,700,863 (GRCm39) probably null Het
Abca4 T C 3: 121,917,200 (GRCm39) probably benign Het
Adamts10 G T 17: 33,762,692 (GRCm39) G557V probably damaging Het
Adgrg6 T C 10: 14,326,360 (GRCm39) H424R probably benign Het
Ano4 T C 10: 88,816,839 (GRCm39) Q623R probably damaging Het
Ap1g1 T A 8: 110,564,364 (GRCm39) probably benign Het
Ap3b1 T C 13: 94,702,222 (GRCm39) S1092P unknown Het
Arhgap32 A T 9: 32,101,364 (GRCm39) probably benign Het
Arhgap40 A T 2: 158,388,670 (GRCm39) S535C probably damaging Het
Atp9a T C 2: 168,491,446 (GRCm39) probably null Het
Bicral A T 17: 47,136,327 (GRCm39) H294Q possibly damaging Het
Ccdc121rt3 T C 5: 112,502,685 (GRCm39) K340E probably damaging Het
Cdhr5 T A 7: 140,852,812 (GRCm39) H58L probably benign Het
Cenpt T C 8: 106,576,147 (GRCm39) E100G possibly damaging Het
Cep97 A G 16: 55,750,969 (GRCm39) S16P probably benign Het
Clec2i T A 6: 128,870,663 (GRCm39) V67D probably damaging Het
Col22a1 A G 15: 71,805,262 (GRCm39) L146P unknown Het
Coq6 G T 12: 84,414,913 (GRCm39) probably benign Het
Cyp1a1 A G 9: 57,607,588 (GRCm39) Q72R probably benign Het
Ep400 A G 5: 110,887,374 (GRCm39) S570P probably benign Het
Erbin T C 13: 103,970,535 (GRCm39) N1027S probably damaging Het
Exog T A 9: 119,277,444 (GRCm39) probably benign Het
Fahd1 A C 17: 25,068,975 (GRCm39) V34G probably benign Het
Fetub C T 16: 22,748,045 (GRCm39) R74W probably benign Het
Fhip2a T A 19: 57,367,174 (GRCm39) L239Q probably benign Het
Frmpd1 G A 4: 45,284,938 (GRCm39) G1253D unknown Het
Galnt12 A G 4: 47,104,255 (GRCm39) D171G probably damaging Het
Gm973 G T 1: 59,621,649 (GRCm39) probably benign Het
Hdlbp C A 1: 93,342,533 (GRCm39) probably null Het
Il1rl1 T A 1: 40,490,877 (GRCm39) I386N possibly damaging Het
Itgav T C 2: 83,623,002 (GRCm39) probably benign Het
Magoh A C 4: 107,742,195 (GRCm39) K114Q possibly damaging Het
Mdfic2 T C 6: 98,215,005 (GRCm39) probably benign Het
Mki67 A T 7: 135,302,075 (GRCm39) D986E probably benign Het
Muc4 G A 16: 32,570,131 (GRCm39) S397N possibly damaging Het
Nckap5 T C 1: 125,909,121 (GRCm39) probably null Het
Neu1 A G 17: 35,151,760 (GRCm39) I185V probably benign Het
Nkiras1 T A 14: 18,278,524 (GRCm38) D79E probably damaging Het
Nkx3-1 A G 14: 69,428,350 (GRCm39) E66G probably benign Het
Or51a5 A T 7: 102,771,193 (GRCm39) I262N possibly damaging Het
Osbpl11 T A 16: 33,016,465 (GRCm39) N73K probably benign Het
Otulin C T 15: 27,608,944 (GRCm39) V2I possibly damaging Het
Pld2 T C 11: 70,443,368 (GRCm39) M421T probably damaging Het
Rgs11 A G 17: 26,426,443 (GRCm39) probably benign Het
Rrad A T 8: 105,356,500 (GRCm39) D133E possibly damaging Het
Scaf11 A G 15: 96,318,368 (GRCm39) S399P probably damaging Het
Sccpdh A G 1: 179,508,080 (GRCm39) probably null Het
Scn2a A G 2: 65,548,186 (GRCm39) E1126G probably damaging Het
Selenop T G 15: 3,305,202 (GRCm39) D119E probably benign Het
Serpinb3c T A 1: 107,204,651 (GRCm39) S32C probably damaging Het
Serpine1 C A 5: 137,093,770 (GRCm39) K315N probably benign Het
Slc27a1 T C 8: 72,032,872 (GRCm39) probably benign Het
Slc4a8 G A 15: 100,686,973 (GRCm39) R259Q probably benign Het
Smtnl2 C T 11: 72,293,962 (GRCm39) R198Q probably damaging Het
Spta1 A C 1: 174,052,023 (GRCm39) Y1819S probably damaging Het
Stard3 T A 11: 98,263,140 (GRCm39) I65N probably damaging Het
Tfrc T C 16: 32,448,997 (GRCm39) L712P probably damaging Het
Tmem201 G A 4: 149,816,343 (GRCm39) R62C probably damaging Het
Trim5 A T 7: 103,914,811 (GRCm39) F410L probably null Het
Txndc2 T A 17: 65,944,948 (GRCm39) I410F probably benign Het
Urb1 C T 16: 90,580,150 (GRCm39) probably benign Het
Vmn1r34 A T 6: 66,614,392 (GRCm39) F115L probably benign Het
Vnn1 T C 10: 23,770,910 (GRCm39) V46A probably benign Het
Xrn1 T A 9: 95,933,789 (GRCm39) S1615R probably benign Het
Zfand4 T A 6: 116,262,828 (GRCm39) C118S probably damaging Het
Zfp952 G A 17: 33,221,979 (GRCm39) E115K possibly damaging Het
Zfpm1 T C 8: 123,061,872 (GRCm39) F368L probably damaging Het
Other mutations in Pdss2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02346:Pdss2 APN 10 43,221,639 (GRCm39) missense possibly damaging 0.80
IGL03337:Pdss2 APN 10 43,221,589 (GRCm39) missense probably damaging 1.00
IGL03340:Pdss2 APN 10 43,269,997 (GRCm39) missense probably benign 0.00
whup UTSW 10 43,269,945 (GRCm39) missense possibly damaging 0.75
R0277:Pdss2 UTSW 10 43,248,172 (GRCm39) missense probably benign
R0323:Pdss2 UTSW 10 43,248,172 (GRCm39) missense probably benign
R0324:Pdss2 UTSW 10 43,269,924 (GRCm39) missense probably damaging 1.00
R0654:Pdss2 UTSW 10 43,097,927 (GRCm39) small deletion probably benign
R1472:Pdss2 UTSW 10 43,289,533 (GRCm39) missense probably benign 0.00
R1801:Pdss2 UTSW 10 43,221,601 (GRCm39) missense probably benign 0.29
R2024:Pdss2 UTSW 10 43,269,871 (GRCm39) missense possibly damaging 0.81
R2025:Pdss2 UTSW 10 43,269,871 (GRCm39) missense possibly damaging 0.81
R2026:Pdss2 UTSW 10 43,269,871 (GRCm39) missense possibly damaging 0.81
R4077:Pdss2 UTSW 10 43,278,518 (GRCm39) missense probably benign
R4079:Pdss2 UTSW 10 43,278,518 (GRCm39) missense probably benign
R4292:Pdss2 UTSW 10 43,097,834 (GRCm39) missense probably benign
R4518:Pdss2 UTSW 10 43,248,146 (GRCm39) missense probably damaging 0.99
R4603:Pdss2 UTSW 10 43,248,197 (GRCm39) missense probably damaging 0.99
R4962:Pdss2 UTSW 10 43,174,908 (GRCm39) missense possibly damaging 0.47
R5016:Pdss2 UTSW 10 43,098,001 (GRCm39) missense probably damaging 1.00
R5610:Pdss2 UTSW 10 43,315,828 (GRCm39) missense probably benign 0.00
R5888:Pdss2 UTSW 10 43,097,793 (GRCm39) synonymous silent
R5972:Pdss2 UTSW 10 43,174,922 (GRCm39) missense probably damaging 0.99
R7246:Pdss2 UTSW 10 43,248,172 (GRCm39) missense probably benign
R7697:Pdss2 UTSW 10 43,221,544 (GRCm39) missense probably damaging 1.00
R7765:Pdss2 UTSW 10 43,340,628 (GRCm39) missense probably benign 0.33
R8227:Pdss2 UTSW 10 43,221,577 (GRCm39) missense probably damaging 1.00
R8497:Pdss2 UTSW 10 43,289,521 (GRCm39) missense possibly damaging 0.89
R8897:Pdss2 UTSW 10 43,221,663 (GRCm39) missense probably damaging 1.00
R9101:Pdss2 UTSW 10 43,269,945 (GRCm39) missense possibly damaging 0.75
R9529:Pdss2 UTSW 10 43,269,990 (GRCm39) missense probably benign 0.01
Predicted Primers
Posted On 2013-08-19