Mutagenetix > Incidental Mutation

Incidental Mutation 'R0744:Rapgef3'

70885

Institutional Source

Beutler Lab

Gene Symbol

Rapgef3

Ensembl Gene

ENSMUSG00000022469

Gene Name

Rap guanine nucleotide exchange factor (GEF) 3

Synonyms

Epac1, 9330170P05Rik, 2310016P22Rik

MMRRC Submission

038925-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.268) question?

Stock #

R0744 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

97642651-97665853 bp(-) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

G to A at 97659466 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000135238 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000126854] [ENSMUST00000128775] [ENSMUST00000129223] [ENSMUST00000134371] [ENSMUST00000134885] [ENSMUST00000149419] [ENSMUST00000146620] [ENSMUST00000177352] [ENSMUST00000175894]

AlphaFold

Q8VCC8

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000123397

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000124374

Predicted Effect

probably benign
Transcript: ENSMUST00000126854

SMART Domains

Protein: ENSMUSP00000116426
Gene: ENSMUSG00000022469

Domain	Start	End	E-Value	Type
DEP	111	186	2.05e-25	SMART
low complexity region	197	208	N/A	INTRINSIC
low complexity region	230	241	N/A	INTRINSIC
cNMP	245	364	2.53e-12	SMART
RasGEFN	383	514	7.04e-10	SMART
Blast:RasGEF	547	644	6e-45	BLAST
RasGEF	661	926	7.98e-95	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000128775

SMART Domains

Protein: ENSMUSP00000120126
Gene: ENSMUSG00000022469

Domain	Start	End	E-Value	Type
DEP	111	186	2.05e-25	SMART
low complexity region	197	208	N/A	INTRINSIC
low complexity region	230	241	N/A	INTRINSIC
cNMP	245	364	2.53e-12	SMART
RasGEFN	383	514	7.04e-10	SMART
Blast:RasGEF	547	644	7e-45	BLAST
RasGEF	661	909	5.53e-80	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000129223

SMART Domains

Protein: ENSMUSP00000118148
Gene: ENSMUSG00000022469

Domain	Start	End	E-Value	Type
DEP	111	186	2.05e-25	SMART
low complexity region	197	208	N/A	INTRINSIC
low complexity region	230	241	N/A	INTRINSIC
cNMP	245	364	2.53e-12	SMART
RasGEFN	383	514	7.04e-10	SMART
Blast:RasGEF	547	644	6e-45	BLAST
RasGEF	661	918	2.11e-85	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000134371

SMART Domains

Protein: ENSMUSP00000122746
Gene: ENSMUSG00000022469

Domain	Start	End	E-Value	Type
Blast:cNMP	1	24	9e-8	BLAST
PDB:3CF6\|E	1	67	5e-12	PDB
Blast:RasGEFN	36	67	2e-15	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000134885

SMART Domains

Protein: ENSMUSP00000135317
Gene: ENSMUSG00000022469

Domain	Start	End	E-Value	Type
RasGEF	1	216	2.91e-56	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000149419

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000142196

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153464

Predicted Effect

probably benign
Transcript: ENSMUST00000146620

SMART Domains

Protein: ENSMUSP00000116673
Gene: ENSMUSG00000022469

Domain	Start	End	E-Value	Type
DEP	69	144	2.05e-25	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000177352

SMART Domains

Protein: ENSMUSP00000135238
Gene: ENSMUSG00000022469

Domain	Start	End	E-Value	Type
DEP	69	144	2.05e-25	SMART
low complexity region	155	166	N/A	INTRINSIC
low complexity region	188	199	N/A	INTRINSIC
cNMP	203	322	2.53e-12	SMART
RasGEFN	341	472	7.04e-10	SMART
Blast:RasGEF	505	602	3e-45	BLAST
RasGEF	619	884	7.98e-95	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000153241

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146214

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000149373

Predicted Effect

probably benign
Transcript: ENSMUST00000175894

Coding Region Coverage

1x: 99.3%
3x: 98.7%
10x: 97.3%
20x: 94.8%

Validation Efficiency

98% (91/93)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit decreased induced neuron apoptosis. Mice homozygous for a different allele exhibit impaired glucose homeostasis with decreased insulin secretion, increased susceptibility to diet-induced obesity and streptozotocin-induced insulitis and hyperglycemia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 94 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700113H08Rik	T	C	10: 87,000,931 (GRCm39)	L41P	probably damaging	Het
A930003A15Rik	T	C	16: 19,702,622 (GRCm39)		noncoding transcript	Het
Abca8a	A	T	11: 109,931,390 (GRCm39)	D1253E	possibly damaging	Het
Acsm3	T	C	7: 119,376,323 (GRCm39)	I350T	possibly damaging	Het
Adcy9	T	C	16: 4,237,135 (GRCm39)	D92G	possibly damaging	Het
Aebp2	T	G	6: 140,588,090 (GRCm39)		probably null	Het
AI987944	T	C	7: 41,026,283 (GRCm39)	Y6C	probably damaging	Het
Ascc3	T	C	10: 50,721,762 (GRCm39)	W2072R	probably benign	Het
Asxl3	A	G	18: 22,649,097 (GRCm39)	D362G	probably damaging	Het
Baiap2l1	T	A	5: 144,203,451 (GRCm39)	D479V	probably benign	Het
Bdp1	A	T	13: 100,172,333 (GRCm39)	H2094Q	probably benign	Het
Bptf	C	A	11: 107,001,638 (GRCm39)		probably null	Het
Camk4	G	T	18: 33,072,507 (GRCm39)	S20I	unknown	Het
Ccdc85a	T	A	11: 28,533,296 (GRCm39)	I83F	probably damaging	Het
Ccnt2	T	A	1: 127,730,131 (GRCm39)	M336K	probably benign	Het
Cd209e	G	T	8: 3,903,205 (GRCm39)	D62E	probably benign	Het
Cd226	A	C	18: 89,225,144 (GRCm39)		probably benign	Het
Clip1	T	C	5: 123,768,784 (GRCm39)	D605G	probably benign	Het
Crtc1	A	G	8: 70,845,663 (GRCm39)	V306A	probably benign	Het
D130043K22Rik	G	A	13: 25,047,563 (GRCm39)		probably benign	Het
Dmxl1	T	C	18: 49,966,215 (GRCm39)	V20A	probably damaging	Het
Dzip3	A	G	16: 48,780,038 (GRCm39)	Y301H	probably damaging	Het
Ephb4	T	A	5: 137,363,929 (GRCm39)	N600K	probably damaging	Het
Erich6	T	A	3: 58,543,543 (GRCm39)		probably benign	Het
Fbn1	T	C	2: 125,156,734 (GRCm39)		probably benign	Het
Fryl	A	T	5: 73,246,424 (GRCm39)		probably benign	Het
Galnt17	T	A	5: 131,179,754 (GRCm39)	D131V	probably damaging	Het
Gm6619	T	A	6: 131,467,297 (GRCm39)	L54Q	probably damaging	Het
Herc2	T	C	7: 55,855,784 (GRCm39)		probably benign	Het
Hic1	T	A	11: 75,056,627 (GRCm39)	Q754L	possibly damaging	Het
Hnf4g	A	T	3: 3,716,689 (GRCm39)	D286V	possibly damaging	Het
Iho1	A	T	9: 108,282,000 (GRCm39)	C563S	probably benign	Het
Itgb5	A	G	16: 33,720,953 (GRCm39)	K339R	probably damaging	Het
Itih1	A	T	14: 30,663,512 (GRCm39)	V164E	probably damaging	Het
Jak3	A	C	8: 72,136,622 (GRCm39)	N643T	probably damaging	Het
Lamp1	T	A	8: 13,222,654 (GRCm39)	F279L	probably damaging	Het
Lrfn5	A	C	12: 61,886,454 (GRCm39)	T81P	probably damaging	Het
Lrrc58	A	G	16: 37,698,935 (GRCm39)		probably benign	Het
Marchf6	T	C	15: 31,480,437 (GRCm39)	Y562C	probably benign	Het
Mark1	T	A	1: 184,653,805 (GRCm39)	I166F	probably damaging	Het
Mark2	A	G	19: 7,263,189 (GRCm39)	Y193H	probably damaging	Het
Mast4	C	G	13: 102,873,895 (GRCm39)	Q1632H	probably damaging	Het
Mcrs1	T	C	15: 99,141,330 (GRCm39)		probably benign	Het
Mgst3	A	G	1: 167,201,374 (GRCm39)	Y104H	probably damaging	Het
Mlxipl	C	T	5: 135,161,329 (GRCm39)	T416I	possibly damaging	Het
Mthfd2l	T	C	5: 91,094,801 (GRCm39)	V90A	probably damaging	Het
Mtnr1a	A	T	8: 45,540,974 (GRCm39)	I312F	probably benign	Het
Muc1	C	A	3: 89,137,635 (GRCm39)	P159Q	possibly damaging	Het
Myom2	A	T	8: 15,182,924 (GRCm39)	K1454*	probably null	Het
Myt1	TGAGGAGGAGGAGGAGGAGG	TGAGGAGGAGGAGGAGG	2: 181,439,298 (GRCm39)		probably benign	Het
Or10g3b	T	C	14: 52,586,835 (GRCm39)	I223V	probably benign	Het
Or2t29	T	A	11: 58,433,988 (GRCm39)	M105L	possibly damaging	Het
Or52ae9	T	C	7: 103,390,132 (GRCm39)	H105R	probably damaging	Het
Or56b1b	T	C	7: 108,164,205 (GRCm39)	T266A	possibly damaging	Het
Or8b1c	A	T	9: 38,384,081 (GRCm39)	I13F	probably benign	Het
Pdcd6	A	G	13: 74,464,443 (GRCm39)		probably benign	Het
Ppp1r16a	C	T	15: 76,577,869 (GRCm39)	Q328*	probably null	Het
Pramel23	A	T	4: 143,425,056 (GRCm39)	M129K	probably benign	Het
Pzp	A	G	6: 128,493,158 (GRCm39)		probably benign	Het
Rab27b	T	C	18: 70,120,112 (GRCm39)		probably benign	Het
Rapsn	T	C	2: 90,867,153 (GRCm39)	Y152H	probably damaging	Het
Rgs11	T	A	17: 26,422,292 (GRCm39)	M29K	probably damaging	Het
Rictor	A	G	15: 6,793,759 (GRCm39)		probably null	Het
Rif1	GCCACCA	GCCA	2: 52,000,336 (GRCm39)		probably benign	Het
Rims1	T	C	1: 22,497,709 (GRCm39)		probably null	Het
Samd9l	T	C	6: 3,372,725 (GRCm39)	E1512G	possibly damaging	Het
Sgsm1	C	T	5: 113,427,050 (GRCm39)	A127T	probably benign	Het
Slc22a28	T	C	19: 8,094,197 (GRCm39)	Y245C	possibly damaging	Het
Slc25a1	T	A	16: 17,745,300 (GRCm39)	H78L	probably benign	Het
Slc26a1	T	A	5: 108,821,389 (GRCm39)	T167S	probably benign	Het
Slc2a12	T	C	10: 22,577,915 (GRCm39)		probably benign	Het
Slc44a5	T	C	3: 153,971,111 (GRCm39)	S654P	probably damaging	Het
Slc51a	T	A	16: 32,294,667 (GRCm39)	T306S	probably benign	Het
Slc6a13	T	G	6: 121,279,826 (GRCm39)	W67G	probably damaging	Het
Sowahc	GGGAGGAGGAGGAGGAGGAGGAGGAGGA	GGGAGGAGGAGGAGGAGGAGGAGGA	10: 59,059,313 (GRCm39)		probably benign	Het
Sp100	A	T	1: 85,627,465 (GRCm39)	I86L	probably damaging	Het
Spata31e5	A	G	1: 28,816,902 (GRCm39)	S377P	possibly damaging	Het
Supt20	T	A	3: 54,622,122 (GRCm39)	Y409N	probably damaging	Het
Synrg	C	T	11: 83,915,131 (GRCm39)	Q1046*	probably null	Het
Tab2	T	C	10: 7,783,345 (GRCm39)		probably benign	Het
Tcof1	T	C	18: 60,978,904 (GRCm39)	D48G	probably damaging	Het
Tex24	A	T	8: 27,834,748 (GRCm39)	H92L	possibly damaging	Het
Tgm6	T	C	2: 129,993,681 (GRCm39)	V640A	probably benign	Het
Tle2	T	C	10: 81,424,781 (GRCm39)	F667L	probably damaging	Het
Tnfaip3	C	A	10: 18,878,697 (GRCm39)	A704S	probably benign	Het
Tomm34	T	C	2: 163,912,896 (GRCm39)	N22D	probably benign	Het
Trabd2b	A	G	4: 114,437,519 (GRCm39)	Q232R	probably benign	Het
Trim62	A	G	4: 128,778,008 (GRCm39)	S16G	probably damaging	Het
Ttc28	T	A	5: 111,378,947 (GRCm39)	I1144N	probably damaging	Het
Unc5a	C	A	13: 55,151,746 (GRCm39)	N56K	possibly damaging	Het
Ush2a	C	T	1: 188,546,603 (GRCm39)		probably benign	Het
Wrn	A	G	8: 33,785,034 (GRCm39)	I446T	possibly damaging	Het
Zbed5	T	A	5: 129,931,113 (GRCm39)	V354E	possibly damaging	Het
Zfp266	G	A	9: 20,411,095 (GRCm39)	H361Y	probably damaging	Het

Other mutations in Rapgef3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01314:Rapgef3	APN	15	97,646,104 (GRCm39)	missense	probably damaging	1.00
IGL01339:Rapgef3	APN	15	97,655,940 (GRCm39)	missense	probably damaging	1.00
IGL01670:Rapgef3	APN	15	97,647,543 (GRCm39)	missense	probably benign	0.15
IGL01902:Rapgef3	APN	15	97,648,181 (GRCm39)	missense	probably benign	0.32
IGL02137:Rapgef3	APN	15	97,648,025 (GRCm39)	missense	probably benign	0.08
IGL02419:Rapgef3	APN	15	97,648,171 (GRCm39)	missense	probably benign	0.33
IGL02427:Rapgef3	APN	15	97,645,017 (GRCm39)	splice site	probably null
IGL02648:Rapgef3	APN	15	97,656,273 (GRCm39)	missense	probably damaging	1.00
IGL02834:Rapgef3	APN	15	97,646,146 (GRCm39)	missense	probably damaging	0.98
IGL03389:Rapgef3	APN	15	97,647,397 (GRCm39)	missense	probably damaging	1.00
IGL03055:Rapgef3	UTSW	15	97,647,370 (GRCm39)	splice site	probably benign
R0394:Rapgef3	UTSW	15	97,655,700 (GRCm39)	intron	probably benign
R0538:Rapgef3	UTSW	15	97,655,698 (GRCm39)	intron	probably benign
R1288:Rapgef3	UTSW	15	97,657,223 (GRCm39)	missense	probably benign	0.31
R1512:Rapgef3	UTSW	15	97,655,382 (GRCm39)	missense	probably benign	0.24
R1676:Rapgef3	UTSW	15	97,659,063 (GRCm39)	missense	probably benign	0.35
R1745:Rapgef3	UTSW	15	97,648,059 (GRCm39)	missense	probably benign	0.22
R1928:Rapgef3	UTSW	15	97,647,914 (GRCm39)	missense	probably damaging	1.00
R2063:Rapgef3	UTSW	15	97,664,842 (GRCm39)	missense	probably damaging	1.00
R2067:Rapgef3	UTSW	15	97,664,842 (GRCm39)	missense	probably damaging	1.00
R2092:Rapgef3	UTSW	15	97,658,604 (GRCm39)	missense	probably damaging	1.00
R4358:Rapgef3	UTSW	15	97,646,529 (GRCm39)	missense	probably benign	0.05
R4624:Rapgef3	UTSW	15	97,656,810 (GRCm39)	missense	probably damaging	1.00
R4627:Rapgef3	UTSW	15	97,656,810 (GRCm39)	missense	probably damaging	1.00
R4727:Rapgef3	UTSW	15	97,658,481 (GRCm39)	missense	probably damaging	1.00
R4812:Rapgef3	UTSW	15	97,651,684 (GRCm39)	missense	probably benign	0.21
R4928:Rapgef3	UTSW	15	97,655,256 (GRCm39)	missense	probably damaging	1.00
R5161:Rapgef3	UTSW	15	97,655,606 (GRCm39)	missense	probably damaging	1.00
R5442:Rapgef3	UTSW	15	97,656,742 (GRCm39)	missense	probably damaging	0.99
R5652:Rapgef3	UTSW	15	97,656,318 (GRCm39)	missense	probably benign	0.00
R5837:Rapgef3	UTSW	15	97,655,223 (GRCm39)	splice site	probably benign
R6056:Rapgef3	UTSW	15	97,656,742 (GRCm39)	missense	probably damaging	0.99
R6167:Rapgef3	UTSW	15	97,665,292 (GRCm39)	unclassified	probably benign
R6694:Rapgef3	UTSW	15	97,657,865 (GRCm39)	missense	probably benign	0.03
R7039:Rapgef3	UTSW	15	97,659,449 (GRCm39)	missense	probably benign	0.01
R7154:Rapgef3	UTSW	15	97,651,758 (GRCm39)	missense	probably benign
R7380:Rapgef3	UTSW	15	97,664,672 (GRCm39)	missense	probably benign	0.00
R7655:Rapgef3	UTSW	15	97,659,090 (GRCm39)	missense	probably damaging	1.00
R7656:Rapgef3	UTSW	15	97,659,090 (GRCm39)	missense	probably damaging	1.00
R7754:Rapgef3	UTSW	15	97,655,627 (GRCm39)	missense	probably damaging	1.00
R7849:Rapgef3	UTSW	15	97,656,271 (GRCm39)	critical splice donor site	probably null
R8061:Rapgef3	UTSW	15	97,659,401 (GRCm39)	missense	probably benign
R8117:Rapgef3	UTSW	15	97,648,747 (GRCm39)	missense	probably benign	0.01
R8179:Rapgef3	UTSW	15	97,658,621 (GRCm39)	missense	probably benign	0.06
R8819:Rapgef3	UTSW	15	97,646,538 (GRCm39)	missense	probably benign	0.39
R8820:Rapgef3	UTSW	15	97,646,538 (GRCm39)	missense	probably benign	0.39
R8824:Rapgef3	UTSW	15	97,664,789 (GRCm39)	missense	probably benign	0.39
R9779:Rapgef3	UTSW	15	97,643,479 (GRCm39)	missense	probably damaging	0.99
R9781:Rapgef3	UTSW	15	97,643,479 (GRCm39)	missense	probably damaging	0.99
R9782:Rapgef3	UTSW	15	97,643,479 (GRCm39)	missense	probably damaging	0.99
RF024:Rapgef3	UTSW	15	97,658,621 (GRCm39)	missense	probably benign	0.06
X0011:Rapgef3	UTSW	15	97,659,354 (GRCm39)	critical splice donor site	probably null

Predicted Primers

PCR Primer
(F):5'- TGCCCAATCAGAGTTCAGCTCAC -3'
(R):5'- GACCTGCAAACTCTTCGTACTGTCC -3'

Sequencing Primer
(F):5'- ccactcccaccacccac -3'
(R):5'- GTACTGTCCTCAGACACCACTTAC -3'

Posted On

2013-09-30