Incidental Mutation 'IGL01287:Vmn1r58'
ID 72761
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Vmn1r58
Ensembl Gene ENSMUSG00000078808
Gene Name vomeronasal 1 receptor 58
Synonyms V3R4, V1rd4
Accession Numbers
Essential gene? Probably non essential (E-score: 0.052) question?
Stock # IGL01287
Quality Score
Status
Chromosome 7
Chromosomal Location 5411886-5416144 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 5414054 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Isoleucine at position 59 (F59I)
Ref Sequence ENSEMBL: ENSMUSP00000154393 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000108569] [ENSMUST00000228728]
AlphaFold G3X9U3
Predicted Effect probably benign
Transcript: ENSMUST00000108569
AA Change: F59I

PolyPhen 2 Score 0.192 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000104209
Gene: ENSMUSG00000078808
AA Change: F59I

DomainStartEndE-ValueType
Pfam:TAS2R 1 296 7.8e-13 PFAM
Pfam:7tm_1 20 279 4.4e-7 PFAM
Pfam:V1R 31 296 7.7e-20 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000209136
Predicted Effect noncoding transcript
Transcript: ENSMUST00000226315
Predicted Effect noncoding transcript
Transcript: ENSMUST00000227549
Predicted Effect probably benign
Transcript: ENSMUST00000228728
AA Change: F59I

PolyPhen 2 Score 0.192 (Sensitivity: 0.92; Specificity: 0.87)
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 52 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700017B05Rik T C 9: 57,165,040 (GRCm39) K445E probably damaging Het
Abca15 A T 7: 119,932,081 (GRCm39) probably benign Het
Acsbg3 C T 17: 57,189,203 (GRCm39) Q204* probably null Het
Acvr1c A T 2: 58,170,254 (GRCm39) C371* probably null Het
Brs3 T C X: 56,092,727 (GRCm39) probably benign Het
Car14 C T 3: 95,806,871 (GRCm39) V198M possibly damaging Het
Cenpc1 G A 5: 86,170,313 (GRCm39) R704* probably null Het
Crybg1 C T 10: 43,868,490 (GRCm39) R1396H possibly damaging Het
Cubn A G 2: 13,315,377 (GRCm39) S3019P probably damaging Het
Cyp2j9 T C 4: 96,471,665 (GRCm39) E222G probably benign Het
Defb50 C A 8: 22,321,187 (GRCm39) T59K probably benign Het
Dlg3 T C X: 99,850,848 (GRCm39) I587T possibly damaging Het
Doc2a C T 7: 126,450,173 (GRCm39) R204C probably damaging Het
Galc T C 12: 98,212,503 (GRCm39) probably benign Het
Gm8257 A T 14: 44,892,800 (GRCm39) F67I probably damaging Het
Hnrnpul1 A T 7: 25,426,323 (GRCm39) N509K probably damaging Het
Iars2 T A 1: 185,028,625 (GRCm39) I678F possibly damaging Het
Ifit1 A G 19: 34,625,533 (GRCm39) E223G possibly damaging Het
Krt81 G A 15: 101,361,269 (GRCm39) H104Y probably benign Het
Lrp4 C A 2: 91,304,293 (GRCm39) D157E probably damaging Het
Ltk T A 2: 119,586,186 (GRCm39) T21S probably benign Het
Lvrn A T 18: 46,997,733 (GRCm39) probably benign Het
Maob G A X: 16,578,881 (GRCm39) A424V probably damaging Het
Myo1g C A 11: 6,465,856 (GRCm39) V410F possibly damaging Het
Myorg T A 4: 41,498,923 (GRCm39) I236F possibly damaging Het
Naxe T C 3: 87,963,981 (GRCm39) H250R probably damaging Het
Nek5 T C 8: 22,601,199 (GRCm39) N174S possibly damaging Het
Or2y3 G T 17: 38,392,998 (GRCm39) N290K probably damaging Het
Or51l14 C T 7: 103,101,002 (GRCm39) R153W probably damaging Het
Or9m2 A G 2: 87,821,288 (GRCm39) T278A probably benign Het
Pex1 A G 5: 3,656,027 (GRCm39) T285A probably benign Het
Pfas A G 11: 68,892,086 (GRCm39) S141P probably benign Het
Pmm1 T C 15: 81,839,945 (GRCm39) T127A probably damaging Het
Proc C A 18: 32,256,873 (GRCm39) probably benign Het
Ranbp9 T C 13: 43,633,980 (GRCm39) E142G probably damaging Het
Recql4 C A 15: 76,594,112 (GRCm39) probably benign Het
Robo4 C T 9: 37,324,336 (GRCm39) P955S possibly damaging Het
Ryr3 T A 2: 112,539,418 (GRCm39) N3274I probably damaging Het
Serpinb10 T C 1: 107,468,612 (GRCm39) probably benign Het
Slc9c1 A T 16: 45,404,811 (GRCm39) K848* probably null Het
Slfn5 A G 11: 82,847,807 (GRCm39) T231A probably damaging Het
Syncrip T C 9: 88,338,660 (GRCm39) probably benign Het
Syt16 A T 12: 74,313,513 (GRCm39) T480S probably damaging Het
Taf1c G A 8: 120,327,931 (GRCm39) T293M probably benign Het
Tbc1d5 T C 17: 51,120,826 (GRCm39) D430G possibly damaging Het
Tbx18 T C 9: 87,606,384 (GRCm39) T254A probably damaging Het
Tpm1 C T 9: 66,943,337 (GRCm39) R105H probably damaging Het
Usp17la T C 7: 104,510,522 (GRCm39) S376P probably benign Het
Vmn1r19 A G 6: 57,382,179 (GRCm39) D244G probably damaging Het
Vmn2r45 A T 7: 8,488,622 (GRCm39) M136K probably benign Het
Vmn2r70 T A 7: 85,218,227 (GRCm39) R24* probably null Het
Vmn2r75 T A 7: 85,797,801 (GRCm39) I671F probably damaging Het
Other mutations in Vmn1r58
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02792:Vmn1r58 APN 7 5,414,228 (GRCm39) start codon destroyed probably null 0.04
IGL03215:Vmn1r58 APN 7 5,413,835 (GRCm39) missense probably benign 0.00
IGL03259:Vmn1r58 APN 7 5,414,086 (GRCm39) nonsense probably null
K7894:Vmn1r58 UTSW 7 5,413,702 (GRCm39) missense probably benign 0.01
R0033:Vmn1r58 UTSW 7 5,413,387 (GRCm39) missense probably damaging 1.00
R0225:Vmn1r58 UTSW 7 5,413,865 (GRCm39) missense probably benign 0.02
R0304:Vmn1r58 UTSW 7 5,413,495 (GRCm39) missense probably damaging 1.00
R0360:Vmn1r58 UTSW 7 5,413,329 (GRCm39) missense probably benign 0.25
R0363:Vmn1r58 UTSW 7 5,413,636 (GRCm39) missense probably damaging 1.00
R0454:Vmn1r58 UTSW 7 5,413,997 (GRCm39) missense possibly damaging 0.69
R0565:Vmn1r58 UTSW 7 5,414,165 (GRCm39) missense probably benign 0.06
R0612:Vmn1r58 UTSW 7 5,413,618 (GRCm39) missense probably damaging 1.00
R0646:Vmn1r58 UTSW 7 5,413,676 (GRCm39) missense probably benign 0.00
R0853:Vmn1r58 UTSW 7 5,413,324 (GRCm39) missense probably damaging 1.00
R0920:Vmn1r58 UTSW 7 5,413,788 (GRCm39) missense probably benign 0.00
R1696:Vmn1r58 UTSW 7 5,413,727 (GRCm39) missense possibly damaging 0.67
R1823:Vmn1r58 UTSW 7 5,413,405 (GRCm39) missense possibly damaging 0.95
R2326:Vmn1r58 UTSW 7 5,413,939 (GRCm39) missense probably damaging 1.00
R4088:Vmn1r58 UTSW 7 5,413,654 (GRCm39) missense probably damaging 1.00
R5065:Vmn1r58 UTSW 7 5,413,834 (GRCm39) missense probably benign 0.00
R5087:Vmn1r58 UTSW 7 5,413,666 (GRCm39) missense probably benign 0.04
R5407:Vmn1r58 UTSW 7 5,413,872 (GRCm39) missense probably benign 0.01
R6855:Vmn1r58 UTSW 7 5,413,451 (GRCm39) missense possibly damaging 0.56
R7052:Vmn1r58 UTSW 7 5,414,134 (GRCm39) missense probably benign 0.04
R7334:Vmn1r58 UTSW 7 5,414,066 (GRCm39) missense probably benign 0.04
R7763:Vmn1r58 UTSW 7 5,413,912 (GRCm39) missense probably damaging 1.00
R7840:Vmn1r58 UTSW 7 5,414,242 (GRCm39) start gained probably benign
R7875:Vmn1r58 UTSW 7 5,413,753 (GRCm39) missense probably damaging 0.98
R8004:Vmn1r58 UTSW 7 5,413,506 (GRCm39) nonsense probably null
R8115:Vmn1r58 UTSW 7 5,413,341 (GRCm39) missense probably benign 0.00
R8781:Vmn1r58 UTSW 7 5,413,482 (GRCm39) missense probably benign 0.00
R8802:Vmn1r58 UTSW 7 5,414,080 (GRCm39) missense probably damaging 1.00
X0058:Vmn1r58 UTSW 7 5,413,394 (GRCm39) missense possibly damaging 0.89
Z1176:Vmn1r58 UTSW 7 5,413,903 (GRCm39) missense probably damaging 0.99
Posted On 2013-10-07