Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01316:Ski'

73839

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Ski

Ensembl Gene

ENSMUSG00000029050

Gene Name

ski sarcoma viral oncogene homolog (avian)

Synonyms

2310012I02Rik, 2610001A11Rik

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

IGL01316

Quality Score

Status

Chromosome

Chromosomal Location

155238532-155306992 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 155306143 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Threonine at position 279 (A279T)

Ref Sequence

ENSEMBL: ENSMUSP00000030917 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000030917] [ENSMUST00000084103]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000030917
AA Change: A279T

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000030917
Gene: ENSMUSG00000029050
AA Change: A279T

Domain	Start	End	E-Value	Type
Pfam:Ski_Sno	84	191	3.2e-49	PFAM
c-SKI_SMAD_bind	217	312	2.5e-61	SMART
low complexity region	470	508	N/A	INTRINSIC
low complexity region	518	534	N/A	INTRINSIC
SCOP:d1eq1a_	555	707	3e-16	SMART
low complexity region	709	714	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000084103
AA Change: A227T

PolyPhen 2 Score 0.990 (Sensitivity: 0.72; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000081120
Gene: ENSMUSG00000029050
AA Change: A227T

Domain	Start	End	E-Value	Type
Pfam:Ski_Sno	29	140	8.3e-43	PFAM
c-SKI_SMAD_bind	165	260	2.5e-61	SMART
low complexity region	418	456	N/A	INTRINSIC
low complexity region	466	482	N/A	INTRINSIC
SCOP:d1eq1a_	503	655	1e-14	SMART
low complexity region	657	662	N/A	INTRINSIC

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes the nuclear protooncogene protein homolog of avian sarcoma viral (v-ski) oncogene. It functions as a repressor of TGF-beta signaling, and may play a role in neural tube development and muscle differentiation. [provided by RefSeq, Oct 2009]
PHENOTYPE: Homozygous null embryos die during late gestation and exhibit neural tube defects, craniofacial anomalies, and reduced skeletal muscle mass. Haploinsufficient mice have an increased susceptibility to tumorigenesis. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 31 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca4	T	C	3: 121,935,404 (GRCm39)	V326A	probably damaging	Het
Aldh1l1	A	G	6: 90,575,362 (GRCm39)	D883G	probably damaging	Het
Ankk1	A	G	9: 49,331,784 (GRCm39)		probably benign	Het
Cacna1s	T	C	1: 136,046,702 (GRCm39)	V1796A	probably benign	Het
Ccdc186	A	C	19: 56,801,845 (GRCm39)	C91G	probably benign	Het
Clec5a	T	C	6: 40,559,196 (GRCm39)	T63A	probably benign	Het
Cyp3a11	T	A	5: 145,791,961 (GRCm39)	K477N	possibly damaging	Het
Dram2	T	A	3: 106,480,296 (GRCm39)	V116E	possibly damaging	Het
Dram2	T	C	3: 106,478,950 (GRCm39)	Y181H	probably benign	Het
Eps15l1	A	T	8: 73,143,258 (GRCm39)	F184L	possibly damaging	Het
Greb1	T	A	12: 16,748,587 (GRCm39)	H1102L	probably benign	Het
Inpp5f	G	A	7: 128,292,430 (GRCm39)		probably benign	Het
Kcng1	T	C	2: 168,110,960 (GRCm39)	N68S	probably damaging	Het
Klhl41	A	G	2: 69,505,068 (GRCm39)	D457G	probably benign	Het
Krt1c	T	C	15: 101,719,646 (GRCm39)	R675G	probably benign	Het
Med13l	T	A	5: 118,900,846 (GRCm39)	V2200D	probably damaging	Het
Mme	T	A	3: 63,247,580 (GRCm39)		probably benign	Het
Nexn	A	T	3: 151,952,870 (GRCm39)	F283L	probably benign	Het
Noxa1	T	C	2: 24,976,023 (GRCm39)	D389G	probably benign	Het
Or2n1c	A	G	17: 38,519,388 (GRCm39)	N84S	probably damaging	Het
Or7g21	A	G	9: 19,032,718 (GRCm39)	I156V	probably benign	Het
Parp1	A	G	1: 180,420,500 (GRCm39)		probably benign	Het
Pirt	T	C	11: 66,816,772 (GRCm39)	S28P	probably damaging	Het
Ros1	A	G	10: 51,963,975 (GRCm39)		probably null	Het
Sdk2	T	C	11: 113,758,791 (GRCm39)	T478A	probably benign	Het
Secisbp2	T	C	13: 51,808,552 (GRCm39)	S106P	probably benign	Het
Shroom1	C	T	11: 53,356,385 (GRCm39)	A416V	probably damaging	Het
Stxbp4	A	G	11: 90,512,475 (GRCm39)		probably benign	Het
Tab2	A	G	10: 7,800,468 (GRCm39)	V28A	probably damaging	Het
Tmem126a	G	A	7: 90,101,927 (GRCm39)	P91S	probably damaging	Het
Ucma	T	C	2: 4,986,042 (GRCm39)		probably benign	Het

Other mutations in Ski

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00919:Ski	APN	4	155,306,799 (GRCm39)	missense	possibly damaging	0.86
IGL02423:Ski	APN	4	155,244,191 (GRCm39)	missense	probably damaging	0.99
IGL03378:Ski	APN	4	155,245,329 (GRCm39)	missense	probably benign
R0518:Ski	UTSW	4	155,243,743 (GRCm39)	critical splice donor site	probably null
R1611:Ski	UTSW	4	155,244,395 (GRCm39)	missense	probably damaging	0.99
R1865:Ski	UTSW	4	155,306,698 (GRCm39)	missense	possibly damaging	0.86
R1986:Ski	UTSW	4	155,306,148 (GRCm39)	missense	probably damaging	1.00
R2040:Ski	UTSW	4	155,306,029 (GRCm39)	missense	probably damaging	1.00
R2419:Ski	UTSW	4	155,245,350 (GRCm39)	missense	probably benign
R5113:Ski	UTSW	4	155,243,849 (GRCm39)	missense	probably benign	0.13
R6236:Ski	UTSW	4	155,244,001 (GRCm39)	missense	probably benign	0.37
R6783:Ski	UTSW	4	155,245,289 (GRCm39)	critical splice donor site	probably null
R8515:Ski	UTSW	4	155,245,083 (GRCm39)	missense	possibly damaging	0.92
R8708:Ski	UTSW	4	155,245,119 (GRCm39)	missense	probably damaging	0.98
R8836:Ski	UTSW	4	155,245,047 (GRCm39)	missense	probably benign	0.31
R8886:Ski	UTSW	4	155,244,016 (GRCm39)	missense	probably null	0.93
R8976:Ski	UTSW	4	155,242,411 (GRCm39)	missense	probably damaging	0.99
R9005:Ski	UTSW	4	155,306,317 (GRCm39)	missense	probably damaging	0.98
R9762:Ski	UTSW	4	155,244,344 (GRCm39)	missense	probably damaging	0.99

Posted On

2013-10-07