Incidental Mutation 'IGL01330:Vmn2r90'
ID 74453
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Vmn2r90
Ensembl Gene ENSMUSG00000092120
Gene Name vomeronasal 2, receptor 90
Synonyms EG626942
Accession Numbers
Essential gene? Probably non essential (E-score: 0.139) question?
Stock # IGL01330
Quality Score
Status
Chromosome 17
Chromosomal Location 17924203-17954429 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 17953542 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Serine to Proline at position 569 (S569P)
Ref Sequence ENSEMBL: ENSMUSP00000126650 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000169805] [ENSMUST00000231659] [ENSMUST00000232078] [ENSMUST00000232113]
AlphaFold E9PXJ8
Predicted Effect probably benign
Transcript: ENSMUST00000169805
AA Change: S569P

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000126650
Gene: ENSMUSG00000092120
AA Change: S569P

DomainStartEndE-ValueType
signal peptide 1 18 N/A INTRINSIC
Pfam:ANF_receptor 77 471 1.8e-43 PFAM
Pfam:NCD3G 514 567 3e-22 PFAM
Pfam:7tm_3 600 835 9.8e-54 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000231659
Predicted Effect noncoding transcript
Transcript: ENSMUST00000231940
Predicted Effect probably benign
Transcript: ENSMUST00000232078
Predicted Effect probably benign
Transcript: ENSMUST00000232113
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 44 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
A1cf A G 19: 31,898,351 (GRCm39) E245G possibly damaging Het
Acap2 T C 16: 30,973,495 (GRCm39) I43V probably damaging Het
Acot11 T C 4: 106,628,681 (GRCm39) T36A probably benign Het
Bsn A G 9: 107,988,112 (GRCm39) probably benign Het
Capza2 T C 6: 17,654,170 (GRCm39) probably null Het
Cerkl A G 2: 79,199,125 (GRCm39) I155T possibly damaging Het
Dclre1b T C 3: 103,710,442 (GRCm39) T490A probably benign Het
Efcab6 G A 15: 83,928,501 (GRCm39) S31L probably benign Het
Faim T A 9: 98,874,588 (GRCm39) M67K probably damaging Het
Frem2 T G 3: 53,562,662 (GRCm39) Q615P possibly damaging Het
Fut9 A G 4: 25,619,791 (GRCm39) V341A possibly damaging Het
Grhpr T C 4: 44,986,375 (GRCm39) F142L probably benign Het
Kif14 T C 1: 136,404,112 (GRCm39) V532A probably damaging Het
Klk1b9 T A 7: 43,627,867 (GRCm39) L55* probably null Het
Kmt2e C A 5: 23,702,946 (GRCm39) P1042Q possibly damaging Het
Mpped1 T A 15: 83,684,320 (GRCm39) I114N probably damaging Het
Mtap C A 4: 89,089,460 (GRCm39) T148K probably damaging Het
Muc16 G A 9: 18,419,803 (GRCm39) A8347V possibly damaging Het
Nhs A T X: 160,624,449 (GRCm39) S967T probably damaging Het
Npas3 A G 12: 54,095,602 (GRCm39) Y344C probably damaging Het
Or51q1 A T 7: 103,629,349 (GRCm39) probably benign Het
Or5an9 T C 19: 12,187,404 (GRCm39) V158A possibly damaging Het
Or8b12c T A 9: 37,715,516 (GRCm39) F103Y probably damaging Het
Osmr A G 15: 6,871,509 (GRCm39) Y303H probably damaging Het
Pcdhb8 A T 18: 37,490,631 (GRCm39) I770F probably benign Het
Pde4a C T 9: 21,103,734 (GRCm39) probably benign Het
Prkacb T G 3: 146,457,266 (GRCm39) N79T probably damaging Het
Psd3 A C 8: 68,149,830 (GRCm39) Y1222D probably damaging Het
Rrbp1 T A 2: 143,810,538 (GRCm39) E847D possibly damaging Het
Sbno1 A T 5: 124,530,042 (GRCm39) D912E probably damaging Het
Sgsm3 T A 15: 80,895,053 (GRCm39) probably benign Het
Shcbp1 T C 8: 4,786,372 (GRCm39) T577A probably benign Het
Siglec1 A T 2: 130,925,456 (GRCm39) V335D probably damaging Het
Siglec1 A T 2: 130,916,925 (GRCm39) L1110* probably null Het
Slc4a11 A G 2: 130,529,602 (GRCm39) I335T probably benign Het
Smchd1 A C 17: 71,743,783 (GRCm39) S461A probably benign Het
Spata16 C T 3: 26,968,864 (GRCm39) P415S probably damaging Het
Tdrd12 G A 7: 35,204,459 (GRCm39) S217L possibly damaging Het
Tmem156 C T 5: 65,237,525 (GRCm39) R45H probably benign Het
Vps13c T A 9: 67,871,390 (GRCm39) V3220E probably damaging Het
Wdr59 T C 8: 112,208,565 (GRCm39) N439S possibly damaging Het
Zfp568 A G 7: 29,721,702 (GRCm39) M215V probably benign Het
Zgrf1 T A 3: 127,377,656 (GRCm39) V967E probably damaging Het
Zkscan16 A G 4: 58,956,483 (GRCm39) D255G possibly damaging Het
Other mutations in Vmn2r90
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00092:Vmn2r90 APN 17 17,953,758 (GRCm39) missense probably benign 0.00
IGL01989:Vmn2r90 APN 17 17,933,494 (GRCm39) nonsense probably null
IGL02080:Vmn2r90 APN 17 17,933,120 (GRCm39) missense probably damaging 1.00
IGL02112:Vmn2r90 APN 17 17,932,465 (GRCm39) missense probably damaging 0.98
IGL02123:Vmn2r90 APN 17 17,953,744 (GRCm39) missense probably benign 0.01
IGL02749:Vmn2r90 APN 17 17,947,122 (GRCm39) makesense probably null
IGL03114:Vmn2r90 APN 17 17,953,771 (GRCm39) missense probably damaging 1.00
R0131:Vmn2r90 UTSW 17 17,932,511 (GRCm39) missense probably benign 0.00
R0131:Vmn2r90 UTSW 17 17,932,511 (GRCm39) missense probably benign 0.00
R0132:Vmn2r90 UTSW 17 17,932,511 (GRCm39) missense probably benign 0.00
R0184:Vmn2r90 UTSW 17 17,947,139 (GRCm39) nonsense probably null
R0379:Vmn2r90 UTSW 17 17,948,401 (GRCm39) missense probably damaging 1.00
R1022:Vmn2r90 UTSW 17 17,948,400 (GRCm39) missense probably damaging 1.00
R1024:Vmn2r90 UTSW 17 17,948,400 (GRCm39) missense probably damaging 1.00
R1897:Vmn2r90 UTSW 17 17,953,566 (GRCm39) missense probably damaging 1.00
R1993:Vmn2r90 UTSW 17 17,933,525 (GRCm39) missense probably damaging 1.00
R2472:Vmn2r90 UTSW 17 17,948,408 (GRCm39) missense probably damaging 1.00
R2508:Vmn2r90 UTSW 17 17,954,229 (GRCm39) missense probably damaging 1.00
R2679:Vmn2r90 UTSW 17 17,933,131 (GRCm39) missense possibly damaging 0.46
R3409:Vmn2r90 UTSW 17 17,953,638 (GRCm39) missense probably benign 0.00
R4693:Vmn2r90 UTSW 17 17,953,956 (GRCm39) missense possibly damaging 0.91
R4797:Vmn2r90 UTSW 17 17,932,567 (GRCm39) missense probably damaging 1.00
R5258:Vmn2r90 UTSW 17 17,933,114 (GRCm39) missense probably benign 0.12
R5358:Vmn2r90 UTSW 17 17,924,412 (GRCm39) critical splice donor site probably null
R5445:Vmn2r90 UTSW 17 17,954,386 (GRCm39) missense probably benign 0.04
R5446:Vmn2r90 UTSW 17 17,932,464 (GRCm39) missense probably damaging 0.99
R5567:Vmn2r90 UTSW 17 17,932,336 (GRCm39) missense probably damaging 1.00
R5680:Vmn2r90 UTSW 17 17,947,034 (GRCm39) missense possibly damaging 0.93
R5686:Vmn2r90 UTSW 17 17,933,712 (GRCm39) missense probably benign 0.02
R5751:Vmn2r90 UTSW 17 17,954,128 (GRCm39) missense probably damaging 0.96
R6156:Vmn2r90 UTSW 17 17,953,606 (GRCm39) missense probably benign 0.01
R6185:Vmn2r90 UTSW 17 17,953,644 (GRCm39) missense probably damaging 1.00
R6450:Vmn2r90 UTSW 17 17,953,498 (GRCm39) missense possibly damaging 0.47
R6707:Vmn2r90 UTSW 17 17,948,364 (GRCm39) missense probably damaging 1.00
R6802:Vmn2r90 UTSW 17 17,932,351 (GRCm39) missense probably damaging 1.00
R6913:Vmn2r90 UTSW 17 17,924,323 (GRCm39) missense probably damaging 1.00
R7070:Vmn2r90 UTSW 17 17,924,313 (GRCm39) missense probably damaging 0.98
R7237:Vmn2r90 UTSW 17 17,924,249 (GRCm39) missense possibly damaging 0.92
R7503:Vmn2r90 UTSW 17 17,933,510 (GRCm39) missense not run
R7698:Vmn2r90 UTSW 17 17,953,596 (GRCm39) missense probably benign
R7943:Vmn2r90 UTSW 17 17,932,566 (GRCm39) missense probably damaging 1.00
R8072:Vmn2r90 UTSW 17 17,947,142 (GRCm39) missense probably damaging 1.00
R8128:Vmn2r90 UTSW 17 17,954,155 (GRCm39) missense probably damaging 1.00
R8295:Vmn2r90 UTSW 17 17,948,358 (GRCm39) missense probably benign 0.03
R8345:Vmn2r90 UTSW 17 17,933,127 (GRCm39) nonsense probably null
R8682:Vmn2r90 UTSW 17 17,932,344 (GRCm39) missense possibly damaging 0.95
R8716:Vmn2r90 UTSW 17 17,924,343 (GRCm39) missense probably damaging 0.98
R9041:Vmn2r90 UTSW 17 17,954,286 (GRCm39) missense probably benign 0.00
R9412:Vmn2r90 UTSW 17 17,954,213 (GRCm39) missense probably damaging 1.00
R9607:Vmn2r90 UTSW 17 17,953,638 (GRCm39) missense possibly damaging 0.88
R9705:Vmn2r90 UTSW 17 17,933,039 (GRCm39) missense possibly damaging 0.91
Z1088:Vmn2r90 UTSW 17 17,953,879 (GRCm39) missense probably damaging 1.00
Z1176:Vmn2r90 UTSW 17 17,933,079 (GRCm39) missense probably damaging 1.00
Posted On 2013-10-07