Incidental Mutation 'IGL01352:Tnfaip2'
| ID |
75410 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Tnfaip2
|
| Ensembl Gene |
ENSMUSG00000021281 |
| Gene Name |
tumor necrosis factor, alpha-induced protein 2 |
| Synonyms |
M-sec, Tnfip2, Exoc3l3 |
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
IGL01352
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
12 |
| Chromosomal Location |
111408903-111421452 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to T
at 111412053 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Glutamic Acid to Aspartic acid
at position 151
(E151D)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000105415
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000102745]
[ENSMUST00000109792]
[ENSMUST00000129467]
[ENSMUST00000174298]
[ENSMUST00000172783]
|
| AlphaFold |
Q61333 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000102745
AA Change: E151D
PolyPhen 2
Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000099806
Gene: ENSMUSG00000021281
AA Change: E151D
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
32 |
48 |
N/A |
INTRINSIC |
|
low complexity region
|
60 |
72 |
N/A |
INTRINSIC |
|
low complexity region
|
83 |
89 |
N/A |
INTRINSIC |
|
low complexity region
|
141 |
147 |
N/A |
INTRINSIC |
|
Pfam:Sec6
|
157 |
688 |
1.3e-111 |
PFAM |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000109792
AA Change: E151D
PolyPhen 2
Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000105415
Gene: ENSMUSG00000021281
AA Change: E151D
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
32 |
48 |
N/A |
INTRINSIC |
|
low complexity region
|
60 |
72 |
N/A |
INTRINSIC |
|
low complexity region
|
83 |
89 |
N/A |
INTRINSIC |
|
low complexity region
|
141 |
147 |
N/A |
INTRINSIC |
|
Pfam:Sec6
|
157 |
705 |
1.7e-107 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000127028
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000127207
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000129467
|
| SMART Domains |
Protein: ENSMUSP00000133274
Gene: ENSMUSG00000021281
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
32 |
48 |
N/A |
INTRINSIC |
|
low complexity region
|
60 |
72 |
N/A |
INTRINSIC |
|
low complexity region
|
83 |
89 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000133865
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000156003
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000174298
|
| SMART Domains |
Protein: ENSMUSP00000133317
Gene: ENSMUSG00000021281
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
14 |
30 |
N/A |
INTRINSIC |
|
low complexity region
|
42 |
54 |
N/A |
INTRINSIC |
|
low complexity region
|
65 |
71 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000172783
|
| SMART Domains |
Protein: ENSMUSP00000133635
Gene: ENSMUSG00000021281
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
32 |
48 |
N/A |
INTRINSIC |
|
low complexity region
|
60 |
72 |
N/A |
INTRINSIC |
|
low complexity region
|
83 |
89 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000174692
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000173581
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000221429
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene was identified as a gene whose expression can be induced by the tumor necrosis factor alpha (TNF) in umbilical vein endothelial cells. The expression of this gene was shown to be induced by retinoic acid in a cell line expressing a oncogenic version of the retinoic acid receptor alpha fusion protein, which suggested that this gene may be a retinoic acid target gene in acute promyelocytic leukemia. [provided by RefSeq, Jul 2008]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 39 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adamts9 |
T |
C |
6: 92,837,155 (GRCm39) |
I1169V |
probably benign |
Het |
| B3gnt5 |
T |
C |
16: 19,587,963 (GRCm39) |
S61P |
probably damaging |
Het |
| Bambi |
G |
A |
18: 3,512,071 (GRCm39) |
A152T |
probably damaging |
Het |
| Cacna1c |
G |
A |
6: 118,633,518 (GRCm39) |
Q930* |
probably null |
Het |
| Ccdc178 |
A |
G |
18: 22,152,031 (GRCm39) |
|
probably benign |
Het |
| Chit1 |
C |
T |
1: 134,076,228 (GRCm39) |
T295M |
probably damaging |
Het |
| Cntnap5c |
C |
A |
17: 58,600,896 (GRCm39) |
N746K |
probably benign |
Het |
| Cyfip2 |
A |
T |
11: 46,156,823 (GRCm39) |
F422I |
probably benign |
Het |
| Dsg3 |
A |
G |
18: 20,656,753 (GRCm39) |
M208V |
probably benign |
Het |
| Erich6 |
G |
A |
3: 58,529,781 (GRCm39) |
|
probably null |
Het |
| Gbf1 |
A |
G |
19: 46,253,654 (GRCm39) |
H574R |
probably damaging |
Het |
| Gm17654 |
T |
G |
14: 43,813,331 (GRCm39) |
E186D |
probably damaging |
Het |
| Gm8165 |
T |
C |
14: 43,913,573 (GRCm39) |
N97S |
unknown |
Het |
| Ilf3 |
C |
T |
9: 21,303,618 (GRCm39) |
L160F |
possibly damaging |
Het |
| Krt84 |
T |
A |
15: 101,437,209 (GRCm39) |
Q318L |
probably damaging |
Het |
| Lrp2 |
T |
A |
2: 69,333,870 (GRCm39) |
H1457L |
possibly damaging |
Het |
| Lrrc37a |
T |
A |
11: 103,390,181 (GRCm39) |
D1748V |
probably benign |
Het |
| Mybl1 |
T |
C |
1: 9,741,904 (GRCm39) |
E676G |
probably damaging |
Het |
| Myo10 |
C |
A |
15: 25,701,783 (GRCm39) |
R53S |
probably damaging |
Het |
| Myorg |
T |
A |
4: 41,499,469 (GRCm39) |
R54* |
probably null |
Het |
| Nrap |
A |
G |
19: 56,368,268 (GRCm39) |
S205P |
probably benign |
Het |
| Or4c52 |
A |
G |
2: 89,846,063 (GRCm39) |
D263G |
probably damaging |
Het |
| Or52z1 |
A |
T |
7: 103,437,285 (GRCm39) |
Y66* |
probably null |
Het |
| Or8b1b |
A |
G |
9: 38,376,030 (GRCm39) |
N231S |
probably benign |
Het |
| Pkhd1 |
T |
A |
1: 20,619,939 (GRCm39) |
M894L |
probably benign |
Het |
| Ptpn13 |
G |
A |
5: 103,634,641 (GRCm39) |
|
probably null |
Het |
| Pycard |
T |
C |
7: 127,592,674 (GRCm39) |
D9G |
probably damaging |
Het |
| Rbfox3 |
G |
A |
11: 118,396,439 (GRCm39) |
|
probably benign |
Het |
| Rnf122 |
C |
T |
8: 31,614,908 (GRCm39) |
R71* |
probably null |
Het |
| Scel |
T |
A |
14: 103,770,774 (GRCm39) |
D69E |
possibly damaging |
Het |
| Spag6 |
T |
G |
2: 18,715,284 (GRCm39) |
M21R |
possibly damaging |
Het |
| Stat5a |
A |
G |
11: 100,771,898 (GRCm39) |
D650G |
probably damaging |
Het |
| Tars3 |
T |
C |
7: 65,308,658 (GRCm39) |
I276T |
possibly damaging |
Het |
| Trio |
G |
A |
15: 27,901,315 (GRCm39) |
T313I |
probably benign |
Het |
| Ubqln4 |
A |
C |
3: 88,471,775 (GRCm39) |
M404L |
probably benign |
Het |
| Vps33b |
T |
A |
7: 79,934,807 (GRCm39) |
|
probably null |
Het |
| Wdfy3 |
A |
T |
5: 102,091,986 (GRCm39) |
V451D |
probably damaging |
Het |
| Zfp341 |
G |
T |
2: 154,470,816 (GRCm39) |
A278S |
probably benign |
Het |
| Zp3r |
C |
T |
1: 130,547,093 (GRCm39) |
A28T |
possibly damaging |
Het |
|
| Other mutations in Tnfaip2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00916:Tnfaip2
|
APN |
12 |
111,419,983 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02550:Tnfaip2
|
APN |
12 |
111,412,535 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0103:Tnfaip2
|
UTSW |
12 |
111,412,244 (GRCm39) |
missense |
probably benign |
0.38 |
|
R0145:Tnfaip2
|
UTSW |
12 |
111,412,292 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R0324:Tnfaip2
|
UTSW |
12 |
111,419,893 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0609:Tnfaip2
|
UTSW |
12 |
111,419,941 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0837:Tnfaip2
|
UTSW |
12 |
111,417,141 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1353:Tnfaip2
|
UTSW |
12 |
111,411,403 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1366:Tnfaip2
|
UTSW |
12 |
111,415,756 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1988:Tnfaip2
|
UTSW |
12 |
111,416,325 (GRCm39) |
critical splice donor site |
probably null |
|
|
R2109:Tnfaip2
|
UTSW |
12 |
111,414,527 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2147:Tnfaip2
|
UTSW |
12 |
111,412,456 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4003:Tnfaip2
|
UTSW |
12 |
111,417,778 (GRCm39) |
splice site |
probably benign |
|
|
R4402:Tnfaip2
|
UTSW |
12 |
111,416,285 (GRCm39) |
missense |
probably benign |
0.43 |
|
R4690:Tnfaip2
|
UTSW |
12 |
111,411,682 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
R4718:Tnfaip2
|
UTSW |
12 |
111,412,463 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R5271:Tnfaip2
|
UTSW |
12 |
111,414,894 (GRCm39) |
intron |
probably benign |
|
|
R6478:Tnfaip2
|
UTSW |
12 |
111,412,097 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7623:Tnfaip2
|
UTSW |
12 |
111,412,072 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8951:Tnfaip2
|
UTSW |
12 |
111,412,310 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9168:Tnfaip2
|
UTSW |
12 |
111,411,382 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9407:Tnfaip2
|
UTSW |
12 |
111,412,161 (GRCm39) |
missense |
probably benign |
|
|
R9607:Tnfaip2
|
UTSW |
12 |
111,412,069 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
| Posted On |
2013-10-07 |
Incidental Mutation