Incidental Mutation 'IGL01369:Abi2'
ID 76069
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Abi2
Ensembl Gene ENSMUSG00000026782
Gene Name abl interactor 2
Synonyms 8430425M24Rik
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # IGL01369
Quality Score
Status
Chromosome 1
Chromosomal Location 60448778-60520317 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 60476215 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 96 (T96A)
Ref Sequence ENSEMBL: ENSMUSP00000140274 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000052332] [ENSMUST00000185788] [ENSMUST00000186097] [ENSMUST00000187709] [ENSMUST00000188594] [ENSMUST00000189082] [ENSMUST00000188618] [ENSMUST00000189980] [ENSMUST00000190158]
AlphaFold P62484
Predicted Effect probably damaging
Transcript: ENSMUST00000052332
AA Change: T96A

PolyPhen 2 Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
SMART Domains Protein: ENSMUSP00000058754
Gene: ENSMUSG00000026782
AA Change: T96A

DomainStartEndE-ValueType
Pfam:Abi_HHR 93 168 1.1e-37 PFAM
low complexity region 236 262 N/A INTRINSIC
low complexity region 335 370 N/A INTRINSIC
SH3 387 442 5.55e-24 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000185788
SMART Domains Protein: ENSMUSP00000139483
Gene: ENSMUSG00000026782

DomainStartEndE-ValueType
Pfam:Abi_HHR 1 67 4.4e-25 PFAM
low complexity region 68 81 N/A INTRINSIC
low complexity region 83 115 N/A INTRINSIC
low complexity region 119 137 N/A INTRINSIC
low complexity region 249 284 N/A INTRINSIC
SH3 301 356 3.4e-26 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000186097
SMART Domains Protein: ENSMUSP00000139501
Gene: ENSMUSG00000026782

DomainStartEndE-ValueType
low complexity region 25 38 N/A INTRINSIC
low complexity region 95 121 N/A INTRINSIC
low complexity region 125 143 N/A INTRINSIC
low complexity region 284 319 N/A INTRINSIC
SH3 336 391 3.4e-26 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000187400
Predicted Effect probably benign
Transcript: ENSMUST00000187709
AA Change: T96A

PolyPhen 2 Score 0.271 (Sensitivity: 0.91; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000139867
Gene: ENSMUSG00000026782
AA Change: T96A

DomainStartEndE-ValueType
Pfam:Abi_HHR 93 165 1.8e-33 PFAM
low complexity region 166 179 N/A INTRINSIC
low complexity region 236 262 N/A INTRINSIC
low complexity region 364 399 N/A INTRINSIC
SH3 416 471 3.4e-26 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000188594
AA Change: T96A

PolyPhen 2 Score 0.732 (Sensitivity: 0.86; Specificity: 0.92)
SMART Domains Protein: ENSMUSP00000140750
Gene: ENSMUSG00000026782
AA Change: T96A

DomainStartEndE-ValueType
Pfam:Abi_HHR 93 165 1.7e-33 PFAM
low complexity region 166 179 N/A INTRINSIC
low complexity region 181 213 N/A INTRINSIC
low complexity region 217 235 N/A INTRINSIC
low complexity region 347 382 N/A INTRINSIC
SH3 399 454 3.4e-26 SMART
Predicted Effect possibly damaging
Transcript: ENSMUST00000189082
AA Change: T40A

PolyPhen 2 Score 0.801 (Sensitivity: 0.84; Specificity: 0.93)
SMART Domains Protein: ENSMUSP00000140522
Gene: ENSMUSG00000026782
AA Change: T40A

DomainStartEndE-ValueType
Pfam:Abi_HHR 38 115 5.8e-34 PFAM
low complexity region 116 129 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000188618
AA Change: T96A

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000140274
Gene: ENSMUSG00000026782
AA Change: T96A

DomainStartEndE-ValueType
Pfam:Abi_HHR 93 171 5.1e-37 PFAM
low complexity region 172 185 N/A INTRINSIC
low complexity region 242 268 N/A INTRINSIC
low complexity region 272 290 N/A INTRINSIC
low complexity region 402 437 N/A INTRINSIC
SH3 454 487 2.29e0 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000189980
AA Change: T96A

PolyPhen 2 Score 0.282 (Sensitivity: 0.91; Specificity: 0.88)
SMART Domains Protein: ENSMUSP00000141068
Gene: ENSMUSG00000026782
AA Change: T96A

DomainStartEndE-ValueType
Pfam:Abi_HHR 93 171 5e-37 PFAM
low complexity region 172 185 N/A INTRINSIC
low complexity region 242 268 N/A INTRINSIC
low complexity region 369 404 N/A INTRINSIC
SH3 421 476 5.55e-24 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000191493
Predicted Effect noncoding transcript
Transcript: ENSMUST00000189649
Predicted Effect probably benign
Transcript: ENSMUST00000190158
SMART Domains Protein: ENSMUSP00000139743
Gene: ENSMUSG00000026782

DomainStartEndE-ValueType
low complexity region 18 31 N/A INTRINSIC
low complexity region 33 65 N/A INTRINSIC
low complexity region 69 87 N/A INTRINSIC
PDB:4N78|F 88 196 5e-62 PDB
low complexity region 226 261 N/A INTRINSIC
SH3 278 333 3.4e-26 SMART
Coding Region Coverage
Validation Efficiency
MGI Phenotype PHENOTYPE: Homozygous null mice display microphthalmia, abnormal lens development, abnormal corpus callosum, cerebral cortex, and hippocampus morphology, and impaired contextual conditioning. [provided by MGI curators]
Allele List at MGI

All alleles(30) : Targeted, knock-out(1) Targeted, other(2) Gene trapped(27)

Other mutations in this stock
Total: 49 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aadacl4fm4 T C 4: 144,401,215 (GRCm39) T90A possibly damaging Het
Adam34 T A 8: 44,104,094 (GRCm39) K517M probably benign Het
Atm A T 9: 53,426,617 (GRCm39) I547N probably benign Het
Cadm4 A T 7: 24,198,947 (GRCm39) D74V possibly damaging Het
Caprin1 G A 2: 103,599,210 (GRCm39) P46S probably damaging Het
Cbl A T 9: 44,112,358 (GRCm39) Y112* probably null Het
Ccdc180 T C 4: 45,900,256 (GRCm39) V246A probably benign Het
Chd1 A T 17: 15,975,259 (GRCm39) E1103V probably damaging Het
Clock G A 5: 76,384,933 (GRCm39) P428L probably benign Het
Cntn2 T A 1: 132,443,843 (GRCm39) I979F probably benign Het
Col2a1 A G 15: 97,875,707 (GRCm39) S1193P unknown Het
Fga A T 3: 82,937,507 (GRCm39) Y128F probably benign Het
Glyr1 A T 16: 4,838,152 (GRCm39) D365E probably benign Het
Gmppb G A 9: 107,928,446 (GRCm39) probably null Het
Gmps A T 3: 63,909,013 (GRCm39) H505L probably benign Het
Hexim2 A G 11: 103,029,464 (GRCm39) N172S probably benign Het
Hmgcr T C 13: 96,803,030 (GRCm39) E65G probably null Het
Hsd17b4 T C 18: 50,305,100 (GRCm39) S446P possibly damaging Het
Kirrel3 C T 9: 34,927,737 (GRCm39) T382I probably benign Het
Klra7 A T 6: 130,203,498 (GRCm39) Y169* probably null Het
Lmbrd1 T C 1: 24,745,055 (GRCm39) probably benign Het
Loxhd1 A G 18: 77,416,897 (GRCm39) E211G possibly damaging Het
Maf1 T A 15: 76,236,892 (GRCm39) F44I probably damaging Het
Mmd2 A G 5: 142,560,984 (GRCm39) S84P probably damaging Het
Morc2b T C 17: 33,357,139 (GRCm39) E211G probably benign Het
Mov10l1 T C 15: 88,909,040 (GRCm39) probably benign Het
Mycbp2 C A 14: 103,392,946 (GRCm39) C3205F possibly damaging Het
Myg1 G A 15: 102,242,773 (GRCm39) V155M probably benign Het
Ncam2 A G 16: 81,258,459 (GRCm39) N247S probably benign Het
Nek11 A G 9: 105,177,259 (GRCm39) probably null Het
Nt5dc3 T A 10: 86,656,139 (GRCm39) probably benign Het
Nudcd3 A G 11: 6,100,551 (GRCm39) Y134H probably damaging Het
Ogfod1 T C 8: 94,789,719 (GRCm39) probably null Het
Or5b99 A T 19: 12,977,125 (GRCm39) L258F possibly damaging Het
Orm2 T C 4: 63,281,215 (GRCm39) V51A probably benign Het
P2ry14 T C 3: 59,022,756 (GRCm39) I244V probably damaging Het
Poll A G 19: 45,542,115 (GRCm39) V397A probably damaging Het
Ppdpf C A 2: 180,829,687 (GRCm39) probably benign Het
Ptch1 T C 13: 63,659,495 (GRCm39) E1249G probably benign Het
Rdh16f1 C A 10: 127,595,844 (GRCm39) T13K probably benign Het
Rrp1 G A 10: 78,240,905 (GRCm39) probably benign Het
Sec14l2 A G 11: 4,053,432 (GRCm39) M346T probably benign Het
Sh2d2a A T 3: 87,759,136 (GRCm39) Q246L probably benign Het
Slc44a1 G A 4: 53,491,448 (GRCm39) D62N probably damaging Het
Snx22 A G 9: 65,976,060 (GRCm39) Y58H probably damaging Het
Spata31f1a T C 4: 42,852,548 (GRCm39) probably null Het
Ttn T A 2: 76,599,779 (GRCm39) D19104V probably damaging Het
Ugt2a3 T C 5: 87,474,979 (GRCm39) S422G probably damaging Het
Zfyve19 G T 2: 119,041,094 (GRCm39) probably benign Het
Other mutations in Abi2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01097:Abi2 APN 1 60,486,505 (GRCm39) missense probably damaging 1.00
IGL02028:Abi2 APN 1 60,473,442 (GRCm39) missense probably damaging 1.00
IGL02074:Abi2 APN 1 60,486,466 (GRCm39) missense probably damaging 1.00
IGL02897:Abi2 APN 1 60,487,353 (GRCm39) missense probably damaging 0.96
IGL02957:Abi2 APN 1 60,509,945 (GRCm39) missense probably damaging 1.00
1mM(1):Abi2 UTSW 1 60,476,216 (GRCm39) missense probably damaging 1.00
P0026:Abi2 UTSW 1 60,492,882 (GRCm39) missense probably benign 0.42
R0062:Abi2 UTSW 1 60,492,884 (GRCm39) missense probably benign 0.42
R0062:Abi2 UTSW 1 60,492,884 (GRCm39) missense probably benign 0.42
R3946:Abi2 UTSW 1 60,492,913 (GRCm39) missense probably damaging 1.00
R4793:Abi2 UTSW 1 60,448,963 (GRCm39) start codon destroyed probably null 1.00
R5110:Abi2 UTSW 1 60,489,280 (GRCm39) missense probably benign 0.00
R5557:Abi2 UTSW 1 60,478,071 (GRCm39) unclassified probably benign
R6037:Abi2 UTSW 1 60,503,738 (GRCm39) missense probably damaging 1.00
R6037:Abi2 UTSW 1 60,503,738 (GRCm39) missense probably damaging 1.00
R6368:Abi2 UTSW 1 60,492,810 (GRCm39) missense possibly damaging 0.82
R6481:Abi2 UTSW 1 60,478,098 (GRCm39) splice site probably null
R7393:Abi2 UTSW 1 60,473,541 (GRCm39) missense possibly damaging 0.92
R7460:Abi2 UTSW 1 60,473,466 (GRCm39) missense probably damaging 1.00
R7573:Abi2 UTSW 1 60,509,867 (GRCm39) missense probably benign 0.37
R7744:Abi2 UTSW 1 60,476,362 (GRCm39) missense probably benign 0.00
R8843:Abi2 UTSW 1 60,492,888 (GRCm39) missense probably null
R8988:Abi2 UTSW 1 60,489,251 (GRCm39) missense probably benign 0.08
R9464:Abi2 UTSW 1 60,478,100 (GRCm39) critical splice acceptor site probably null
R9528:Abi2 UTSW 1 60,473,453 (GRCm39) missense probably damaging 0.99
R9569:Abi2 UTSW 1 60,503,763 (GRCm39) missense probably damaging 0.97
R9576:Abi2 UTSW 1 60,449,008 (GRCm39) missense possibly damaging 0.68
Z1177:Abi2 UTSW 1 60,476,324 (GRCm39) missense probably damaging 1.00
Posted On 2013-10-07