Incidental Mutation 'R0788:Dpysl5'
| ID |
76340 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Dpysl5
|
| Ensembl Gene |
ENSMUSG00000029168 |
| Gene Name |
dihydropyrimidinase-like 5 |
| Synonyms |
CRMP-5, Crmp5, CRAM |
| MMRRC Submission |
038968-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.234)
|
| Stock # |
R0788 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
5 |
| Chromosomal Location |
30868908-30956713 bp(+) (GRCm39) |
| Type of Mutation |
critical splice donor site (1 bp from exon) |
| DNA Base Change (assembly) |
G to A
at 30946185 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000110377
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000088081]
[ENSMUST00000114729]
|
| AlphaFold |
Q9EQF6 |
| Predicted Effect |
probably null
Transcript: ENSMUST00000088081
|
| SMART Domains |
Protein: ENSMUSP00000085400
Gene: ENSMUSG00000029168
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Amidohydro_5
|
28 |
97 |
3.4e-11 |
PFAM |
|
Pfam:Amidohydro_4
|
52 |
403 |
4.3e-17 |
PFAM |
|
Pfam:Amidohydro_1
|
57 |
406 |
2.3e-19 |
PFAM |
|
| Predicted Effect |
probably null
Transcript: ENSMUST00000114729
|
| SMART Domains |
Protein: ENSMUSP00000110377
Gene: ENSMUSG00000029168
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Amidohydro_1
|
57 |
446 |
1.1e-23 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000127365
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000136657
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000138625
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000198503
|
| Meta Mutation Damage Score |
0.9488 |
| Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 96.9%
- 20x: 93.0%
|
| Validation Efficiency |
98% (53/54) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the CRMP (collapsing response mediator protein) family thought to be involved in neural development. Antibodies to the encoded protein were found in some patients with neurologic symptoms who had paraneoplastic syndrome. A pseudogene of this gene is found on chromosome 11. Multiple alternatively spliced variants, encoding the same protein, have been identified. [provided by RefSeq, Dec 2011]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit limb grasping, abnormal Purkinje morphology, absent long term depression, and no response to BDNF. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 51 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 4833420G17Rik |
T |
A |
13: 119,610,468 (GRCm39) |
Y380* |
probably null |
Het |
| 4931406B18Rik |
C |
A |
7: 43,148,623 (GRCm39) |
S196I |
probably damaging |
Het |
| Ablim2 |
T |
C |
5: 36,015,245 (GRCm39) |
S519P |
probably benign |
Het |
| Adnp2 |
A |
C |
18: 80,173,219 (GRCm39) |
C397G |
probably benign |
Het |
| Aldh1l2 |
A |
G |
10: 83,352,028 (GRCm39) |
S156P |
probably damaging |
Het |
| Bcl2l15 |
G |
T |
3: 103,740,794 (GRCm39) |
|
probably null |
Het |
| Brd9 |
T |
A |
13: 74,092,986 (GRCm39) |
|
probably benign |
Het |
| Cars2 |
A |
C |
8: 11,579,672 (GRCm39) |
I262R |
possibly damaging |
Het |
| Ccdc106 |
T |
C |
7: 5,060,533 (GRCm39) |
|
probably benign |
Het |
| Cdh3 |
G |
A |
8: 107,268,047 (GRCm39) |
V361M |
probably benign |
Het |
| Cdhr1 |
A |
C |
14: 36,809,332 (GRCm39) |
|
probably null |
Het |
| Cdk5rap2 |
A |
G |
4: 70,225,468 (GRCm39) |
I559T |
possibly damaging |
Het |
| Cdkn2aip |
T |
A |
8: 48,166,798 (GRCm39) |
Q3L |
possibly damaging |
Het |
| Chd1 |
G |
T |
17: 15,927,376 (GRCm39) |
V10F |
possibly damaging |
Het |
| Col4a4 |
G |
A |
1: 82,502,717 (GRCm39) |
P356S |
unknown |
Het |
| Col6a4 |
T |
C |
9: 105,949,197 (GRCm39) |
K813E |
probably benign |
Het |
| Cttnbp2 |
G |
A |
6: 18,423,834 (GRCm39) |
T830I |
probably damaging |
Het |
| Cyp2t4 |
A |
G |
7: 26,854,588 (GRCm39) |
M23V |
probably null |
Het |
| Cyp3a16 |
T |
C |
5: 145,401,886 (GRCm39) |
K59E |
probably benign |
Het |
| E130308A19Rik |
T |
A |
4: 59,719,847 (GRCm39) |
Y460N |
possibly damaging |
Het |
| Ear6 |
T |
A |
14: 52,091,487 (GRCm39) |
C11* |
probably null |
Het |
| Fat1 |
C |
T |
8: 45,477,020 (GRCm39) |
T1999M |
probably benign |
Het |
| Gsdmd |
T |
A |
15: 75,736,103 (GRCm39) |
C77* |
probably null |
Het |
| Hsp90ab1 |
ACTTCTT |
ACTT |
17: 45,880,425 (GRCm39) |
|
probably benign |
Het |
| Kif28 |
A |
T |
1: 179,532,788 (GRCm39) |
|
probably benign |
Het |
| Krt6b |
A |
G |
15: 101,585,954 (GRCm39) |
I373T |
probably damaging |
Het |
| Lgr5 |
T |
C |
10: 115,288,902 (GRCm39) |
T509A |
probably damaging |
Het |
| Mapkbp1 |
C |
T |
2: 119,854,482 (GRCm39) |
P1354S |
probably benign |
Het |
| Nat10 |
A |
G |
2: 103,573,460 (GRCm39) |
S346P |
probably damaging |
Het |
| Ncoa2 |
T |
C |
1: 13,237,113 (GRCm39) |
|
probably benign |
Het |
| Necap1 |
C |
T |
6: 122,858,495 (GRCm39) |
R113W |
probably damaging |
Het |
| Or1l4 |
T |
A |
2: 37,092,035 (GRCm39) |
Y261N |
possibly damaging |
Het |
| Orc4 |
A |
T |
2: 48,827,479 (GRCm39) |
V38E |
possibly damaging |
Het |
| Per1 |
G |
A |
11: 68,992,185 (GRCm39) |
|
probably benign |
Het |
| Polb |
T |
C |
8: 23,132,354 (GRCm39) |
D130G |
probably null |
Het |
| Ppcs |
T |
C |
4: 119,279,375 (GRCm39) |
N59S |
probably damaging |
Het |
| Ppp2ca |
A |
G |
11: 52,003,969 (GRCm39) |
E42G |
possibly damaging |
Het |
| Ptprf |
T |
C |
4: 118,083,663 (GRCm39) |
T807A |
probably damaging |
Het |
| Rapgef2 |
A |
C |
3: 79,006,502 (GRCm39) |
F284V |
possibly damaging |
Het |
| Sestd1 |
A |
T |
2: 77,022,060 (GRCm39) |
F544I |
probably damaging |
Het |
| Slfn3 |
G |
A |
11: 83,103,662 (GRCm39) |
G178S |
possibly damaging |
Het |
| Supt6 |
G |
A |
11: 78,098,598 (GRCm39) |
|
probably benign |
Het |
| Tas2r109 |
T |
A |
6: 132,957,264 (GRCm39) |
Q222L |
probably benign |
Het |
| Tekt4 |
A |
C |
17: 25,691,021 (GRCm39) |
D109A |
probably damaging |
Het |
| Tob2 |
C |
A |
15: 81,735,903 (GRCm39) |
R22L |
probably damaging |
Het |
| Ttn |
T |
G |
2: 76,653,282 (GRCm39) |
E178D |
possibly damaging |
Het |
| Ube2u |
C |
A |
4: 100,371,937 (GRCm39) |
|
probably benign |
Het |
| Uggt2 |
A |
G |
14: 119,332,812 (GRCm39) |
|
probably benign |
Het |
| Vstm2a |
T |
C |
11: 16,209,968 (GRCm39) |
F65L |
probably damaging |
Het |
| Zfp57 |
A |
G |
17: 37,317,092 (GRCm39) |
|
probably benign |
Het |
| Znrf3 |
G |
T |
11: 5,231,320 (GRCm39) |
P731Q |
probably benign |
Het |
|
| Other mutations in Dpysl5 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL02177:Dpysl5
|
APN |
5 |
30,902,622 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02277:Dpysl5
|
APN |
5 |
30,946,125 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0517:Dpysl5
|
UTSW |
5 |
30,935,410 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1716:Dpysl5
|
UTSW |
5 |
30,935,338 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2016:Dpysl5
|
UTSW |
5 |
30,948,941 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2208:Dpysl5
|
UTSW |
5 |
30,948,941 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2211:Dpysl5
|
UTSW |
5 |
30,948,941 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2965:Dpysl5
|
UTSW |
5 |
30,948,941 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4440:Dpysl5
|
UTSW |
5 |
30,949,612 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4863:Dpysl5
|
UTSW |
5 |
30,941,687 (GRCm39) |
missense |
probably benign |
0.08 |
|
R4918:Dpysl5
|
UTSW |
5 |
30,949,612 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5377:Dpysl5
|
UTSW |
5 |
30,948,857 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6379:Dpysl5
|
UTSW |
5 |
30,935,317 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R6621:Dpysl5
|
UTSW |
5 |
30,941,813 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7199:Dpysl5
|
UTSW |
5 |
30,940,539 (GRCm39) |
missense |
probably benign |
0.21 |
|
R7232:Dpysl5
|
UTSW |
5 |
30,949,642 (GRCm39) |
missense |
probably benign |
0.03 |
|
R7388:Dpysl5
|
UTSW |
5 |
30,902,805 (GRCm39) |
missense |
probably benign |
|
|
R7446:Dpysl5
|
UTSW |
5 |
30,936,231 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7868:Dpysl5
|
UTSW |
5 |
30,902,760 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8041:Dpysl5
|
UTSW |
5 |
30,953,658 (GRCm39) |
missense |
probably benign |
0.28 |
|
R8428:Dpysl5
|
UTSW |
5 |
30,902,811 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R8835:Dpysl5
|
UTSW |
5 |
30,936,282 (GRCm39) |
critical splice donor site |
probably null |
|
|
R8888:Dpysl5
|
UTSW |
5 |
30,902,687 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8943:Dpysl5
|
UTSW |
5 |
30,935,375 (GRCm39) |
missense |
probably benign |
0.33 |
|
R9033:Dpysl5
|
UTSW |
5 |
30,948,941 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9139:Dpysl5
|
UTSW |
5 |
30,935,397 (GRCm39) |
missense |
probably benign |
0.45 |
|
R9305:Dpysl5
|
UTSW |
5 |
30,948,959 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9522:Dpysl5
|
UTSW |
5 |
30,935,399 (GRCm39) |
nonsense |
probably null |
|
|
R9700:Dpysl5
|
UTSW |
5 |
30,904,417 (GRCm39) |
nonsense |
probably null |
|
|
Z1176:Dpysl5
|
UTSW |
5 |
30,935,464 (GRCm39) |
missense |
probably benign |
0.01 |
|
| Predicted Primers |
PCR Primer
(F):5'- CTCTCCCCAGTGACACTCTGAACAT -3'
(R):5'- ACTGGATCATAAGAGGTTGGAAGACTGA -3'
Sequencing Primer
(F):5'- GACACTCTGAACATTGTGGC -3'
(R):5'- gcttttgctgtctgcctg -3'
|
| Posted On |
2013-10-16 |
Incidental Mutation