Incidental Mutation 'IGL01375:Tnfrsf1b'
ID |
78691 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Tnfrsf1b
|
Ensembl Gene |
ENSMUSG00000028599 |
Gene Name |
tumor necrosis factor receptor superfamily, member 1b |
Synonyms |
CD120b, TNFBR, TNFR80, p75, TNFalpha-R2, TNFRII, p75 TNFR, TNF-R2, TNF-R-II, TNF-alphaR2, Tnfr2, TNF-R75 |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.216)
|
Stock # |
IGL01375
|
Quality Score |
|
Status
|
|
Chromosome |
4 |
Chromosomal Location |
144940033-144973440 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to C
at 144951986 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Tyrosine to Cysteine
at position 126
(Y126C)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000030336
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000030336]
[ENSMUST00000143055]
|
AlphaFold |
P25119 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000030336
AA Change: Y126C
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000030336 Gene: ENSMUSG00000028599 AA Change: Y126C
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
20 |
N/A |
INTRINSIC |
TNFR
|
40 |
76 |
2.15e-9 |
SMART |
TNFR
|
79 |
119 |
2.19e-10 |
SMART |
TNFR
|
121 |
163 |
7.27e-7 |
SMART |
TNFR
|
166 |
202 |
2.22e-2 |
SMART |
transmembrane domain
|
263 |
285 |
N/A |
INTRINSIC |
low complexity region
|
324 |
338 |
N/A |
INTRINSIC |
low complexity region
|
363 |
378 |
N/A |
INTRINSIC |
low complexity region
|
390 |
405 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000143055
|
SMART Domains |
Protein: ENSMUSP00000115702 Gene: ENSMUSG00000028599
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
20 |
N/A |
INTRINSIC |
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the TNF-receptor superfamily. This protein and TNF-receptor 1 form a heterocomplex that mediates the recruitment of two anti-apoptotic proteins, c-IAP1 and c-IAP2, which possess E3 ubiquitin ligase activity. The function of IAPs in TNF-receptor signalling is unknown, however, c-IAP1 is thought to potentiate TNF-induced apoptosis by the ubiquitination and degradation of TNF-receptor-associated factor 2, which mediates anti-apoptotic signals. Knockout studies in mice also suggest a role of this protein in protecting neurons from apoptosis by stimulating antioxidative pathways. [provided by RefSeq, Jul 2008] PHENOTYPE: Homozygotes for targeted null mutations exhibit altered inflammatory responses in a variety of experimental conditions, impaired recovery from spinal cord injury, enhanced ischemia-reperfusion-induced retinal damage, and resistance to cerebral malaria. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 35 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Anxa2 |
C |
T |
9: 69,390,301 (GRCm39) |
R68* |
probably null |
Het |
Apc |
C |
T |
18: 34,446,707 (GRCm39) |
S1167L |
probably damaging |
Het |
Aqp2 |
A |
G |
15: 99,479,983 (GRCm39) |
T149A |
possibly damaging |
Het |
Asb8 |
T |
C |
15: 98,039,190 (GRCm39) |
E70G |
probably damaging |
Het |
Carmil1 |
T |
C |
13: 24,278,454 (GRCm39) |
I172V |
possibly damaging |
Het |
Cd38 |
A |
G |
5: 44,060,939 (GRCm39) |
M172V |
probably benign |
Het |
Dync2i1 |
G |
T |
12: 116,193,296 (GRCm39) |
A552E |
possibly damaging |
Het |
Dyrk2 |
A |
G |
10: 118,696,592 (GRCm39) |
V222A |
probably damaging |
Het |
Ephb6 |
T |
A |
6: 41,592,845 (GRCm39) |
|
probably benign |
Het |
Fbxo15 |
T |
C |
18: 84,976,404 (GRCm39) |
S48P |
possibly damaging |
Het |
Gsdma3 |
T |
C |
11: 98,520,767 (GRCm39) |
|
probably null |
Het |
H2bl1 |
A |
G |
13: 99,120,650 (GRCm39) |
|
probably benign |
Het |
Htr1d |
A |
G |
4: 136,170,484 (GRCm39) |
T238A |
probably benign |
Het |
Kcnh3 |
G |
A |
15: 99,124,874 (GRCm39) |
W108* |
probably null |
Het |
Kdsr |
A |
T |
1: 106,655,424 (GRCm39) |
Y272N |
probably benign |
Het |
Lrp2 |
A |
G |
2: 69,308,910 (GRCm39) |
|
probably benign |
Het |
Nup210l |
G |
A |
3: 90,067,200 (GRCm39) |
V747M |
probably damaging |
Het |
Or10g3 |
A |
G |
14: 52,609,865 (GRCm39) |
I215T |
probably damaging |
Het |
Or4a67 |
A |
G |
2: 88,597,810 (GRCm39) |
V283A |
probably benign |
Het |
Pfn3 |
T |
A |
13: 55,562,641 (GRCm39) |
R113S |
possibly damaging |
Het |
Pik3r4 |
T |
C |
9: 105,521,803 (GRCm39) |
I123T |
possibly damaging |
Het |
Plec |
A |
T |
15: 76,060,640 (GRCm39) |
I3121N |
probably damaging |
Het |
Prepl |
C |
T |
17: 85,379,419 (GRCm39) |
G336D |
possibly damaging |
Het |
Prpf8 |
C |
A |
11: 75,385,121 (GRCm39) |
A794D |
possibly damaging |
Het |
Prps1l1 |
A |
G |
12: 35,035,631 (GRCm39) |
T249A |
possibly damaging |
Het |
Rptor |
T |
A |
11: 119,787,262 (GRCm39) |
F1276I |
possibly damaging |
Het |
Serpina3f |
G |
A |
12: 104,186,735 (GRCm39) |
V434I |
unknown |
Het |
Slc25a12 |
T |
C |
2: 71,138,394 (GRCm39) |
|
probably benign |
Het |
Slc4a4 |
T |
C |
5: 89,327,593 (GRCm39) |
C642R |
probably damaging |
Het |
Slit2 |
C |
T |
5: 48,439,056 (GRCm39) |
|
probably benign |
Het |
Tasor |
A |
G |
14: 27,162,120 (GRCm39) |
R159G |
probably damaging |
Het |
Tgfbr3 |
A |
G |
5: 107,284,837 (GRCm39) |
V604A |
probably benign |
Het |
Traf4 |
T |
C |
11: 78,050,908 (GRCm39) |
N416S |
probably benign |
Het |
Trappc10 |
A |
G |
10: 78,024,733 (GRCm39) |
I1132T |
possibly damaging |
Het |
Vps8 |
T |
A |
16: 21,378,122 (GRCm39) |
Y642* |
probably null |
Het |
|
Other mutations in Tnfrsf1b |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01716:Tnfrsf1b
|
APN |
4 |
144,942,493 (GRCm39) |
missense |
probably damaging |
0.97 |
IGL01974:Tnfrsf1b
|
APN |
4 |
144,942,421 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02631:Tnfrsf1b
|
APN |
4 |
144,951,398 (GRCm39) |
missense |
probably damaging |
1.00 |
R0011:Tnfrsf1b
|
UTSW |
4 |
144,949,536 (GRCm39) |
missense |
possibly damaging |
0.77 |
R0135:Tnfrsf1b
|
UTSW |
4 |
144,955,616 (GRCm39) |
missense |
probably benign |
0.15 |
R0194:Tnfrsf1b
|
UTSW |
4 |
144,951,382 (GRCm39) |
missense |
probably benign |
0.04 |
R0761:Tnfrsf1b
|
UTSW |
4 |
144,942,670 (GRCm39) |
missense |
possibly damaging |
0.95 |
R1124:Tnfrsf1b
|
UTSW |
4 |
144,950,926 (GRCm39) |
missense |
probably benign |
0.23 |
R1696:Tnfrsf1b
|
UTSW |
4 |
144,954,044 (GRCm39) |
missense |
probably benign |
|
R3692:Tnfrsf1b
|
UTSW |
4 |
144,954,092 (GRCm39) |
missense |
probably benign |
0.01 |
R4248:Tnfrsf1b
|
UTSW |
4 |
144,942,535 (GRCm39) |
missense |
probably benign |
0.01 |
R4409:Tnfrsf1b
|
UTSW |
4 |
144,950,855 (GRCm39) |
nonsense |
probably null |
|
R4957:Tnfrsf1b
|
UTSW |
4 |
144,973,328 (GRCm39) |
missense |
possibly damaging |
0.90 |
R4957:Tnfrsf1b
|
UTSW |
4 |
144,973,327 (GRCm39) |
missense |
probably damaging |
0.99 |
R5180:Tnfrsf1b
|
UTSW |
4 |
144,954,067 (GRCm39) |
missense |
probably damaging |
1.00 |
R5425:Tnfrsf1b
|
UTSW |
4 |
144,955,678 (GRCm39) |
critical splice acceptor site |
probably null |
|
R6163:Tnfrsf1b
|
UTSW |
4 |
144,946,477 (GRCm39) |
missense |
probably benign |
0.24 |
R7055:Tnfrsf1b
|
UTSW |
4 |
144,951,457 (GRCm39) |
missense |
probably damaging |
1.00 |
R7891:Tnfrsf1b
|
UTSW |
4 |
144,955,660 (GRCm39) |
missense |
probably damaging |
1.00 |
R8796:Tnfrsf1b
|
UTSW |
4 |
144,946,485 (GRCm39) |
missense |
possibly damaging |
0.95 |
R8919:Tnfrsf1b
|
UTSW |
4 |
144,950,150 (GRCm39) |
missense |
probably damaging |
1.00 |
R9658:Tnfrsf1b
|
UTSW |
4 |
144,942,424 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2013-11-05 |