Incidental Mutation 'IGL01401:Carm1'
ID |
79658 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Carm1
|
Ensembl Gene |
ENSMUSG00000032185 |
Gene Name |
coactivator-associated arginine methyltransferase 1 |
Synonyms |
m9Bei, Prmt4 |
Accession Numbers |
|
Essential gene? |
Essential
(E-score: 1.000)
|
Stock # |
IGL01401
|
Quality Score |
|
Status
|
|
Chromosome |
9 |
Chromosomal Location |
21458163-21500763 bp(+) (GRCm39) |
Type of Mutation |
critical splice donor site (2 bp from exon) |
DNA Base Change (assembly) |
T to A
at 21480878 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000111053
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000034703]
[ENSMUST00000115394]
[ENSMUST00000115395]
[ENSMUST00000130032]
|
AlphaFold |
Q9WVG6 |
Predicted Effect |
probably null
Transcript: ENSMUST00000034703
|
SMART Domains |
Protein: ENSMUSP00000034703 Gene: ENSMUSG00000032185
Domain | Start | End | E-Value | Type |
Pfam:CARM1
|
27 |
140 |
2.1e-71 |
PFAM |
Pfam:PRMT5
|
144 |
447 |
2.3e-16 |
PFAM |
Pfam:MTS
|
166 |
308 |
2.7e-10 |
PFAM |
Pfam:Methyltransf_9
|
168 |
318 |
1.1e-9 |
PFAM |
Pfam:PrmA
|
173 |
287 |
2.2e-12 |
PFAM |
Pfam:Methyltransf_31
|
183 |
325 |
7.4e-11 |
PFAM |
Pfam:Methyltransf_18
|
185 |
290 |
5.1e-12 |
PFAM |
Pfam:Methyltransf_26
|
186 |
287 |
5.3e-10 |
PFAM |
Pfam:Methyltransf_11
|
190 |
287 |
8.5e-7 |
PFAM |
low complexity region
|
477 |
494 |
N/A |
INTRINSIC |
low complexity region
|
562 |
576 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000115394
|
SMART Domains |
Protein: ENSMUSP00000111052 Gene: ENSMUSG00000032185
Domain | Start | End | E-Value | Type |
Pfam:CARM1
|
29 |
140 |
4.7e-63 |
PFAM |
Pfam:PRMT5
|
145 |
447 |
4.1e-16 |
PFAM |
Pfam:Methyltransf_9
|
168 |
318 |
1.4e-9 |
PFAM |
Pfam:MTS
|
170 |
299 |
2.5e-9 |
PFAM |
Pfam:PrmA
|
175 |
287 |
3.7e-12 |
PFAM |
Pfam:Methyltransf_31
|
183 |
326 |
1.9e-10 |
PFAM |
Pfam:Methyltransf_18
|
185 |
290 |
4e-9 |
PFAM |
Pfam:Methyltransf_11
|
190 |
287 |
6.5e-7 |
PFAM |
low complexity region
|
477 |
494 |
N/A |
INTRINSIC |
low complexity region
|
606 |
619 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000115395
|
SMART Domains |
Protein: ENSMUSP00000111053 Gene: ENSMUSG00000032185
Domain | Start | End | E-Value | Type |
Pfam:CARM1
|
27 |
140 |
2e-71 |
PFAM |
Pfam:PRMT5
|
144 |
447 |
2.1e-16 |
PFAM |
Pfam:MTS
|
166 |
308 |
2.6e-10 |
PFAM |
Pfam:Methyltransf_9
|
168 |
318 |
1.1e-9 |
PFAM |
Pfam:PrmA
|
172 |
287 |
2.1e-12 |
PFAM |
Pfam:Methyltransf_31
|
183 |
326 |
6.9e-11 |
PFAM |
Pfam:Methyltransf_18
|
185 |
290 |
4.8e-12 |
PFAM |
Pfam:Methyltransf_26
|
186 |
287 |
5e-10 |
PFAM |
Pfam:Methyltransf_11
|
190 |
287 |
8.1e-7 |
PFAM |
low complexity region
|
477 |
494 |
N/A |
INTRINSIC |
low complexity region
|
540 |
553 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000130032
|
SMART Domains |
Protein: ENSMUSP00000117243 Gene: ENSMUSG00000032185
Domain | Start | End | E-Value | Type |
Pfam:CARM1
|
27 |
140 |
2.8e-73 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000147749
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000154049
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the protein arginine methyltransferase (PRMT) family. The encoded enzyme catalyzes the methylation of guanidino nitrogens of arginyl residues of proteins. The enzyme acts specifically on histones and other chromatin-associated proteins and is involved in regulation of gene expression. The enzyme may act in association with other proteins or within multi-protein complexes and may play a role in cell type-specific functions and cell lineage specification. A related pseudogene is located on chromosome 9. [provided by RefSeq, Aug 2013] PHENOTYPE: Homozygous null fetuses are small and die perinatally, whereas heterozygotes are born at the expected Mendelian ratio but show decreased survival through weaning. Mice homozygous for a kinase null allele exhibit neonatal lethality, arrested T cell development, and impaired adipogenesis. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 38 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adgrl3 |
T |
C |
5: 81,836,516 (GRCm39) |
V758A |
possibly damaging |
Het |
Arf4 |
T |
C |
14: 26,359,609 (GRCm39) |
L12P |
probably damaging |
Het |
Bltp1 |
A |
G |
3: 36,996,441 (GRCm39) |
N1051S |
probably benign |
Het |
C4bp |
A |
T |
1: 130,575,801 (GRCm39) |
V230E |
possibly damaging |
Het |
Cd4 |
G |
A |
6: 124,856,341 (GRCm39) |
T50I |
probably benign |
Het |
Ceacam16 |
T |
C |
7: 19,595,054 (GRCm39) |
Y8C |
probably benign |
Het |
Ckap2l |
A |
T |
2: 129,111,136 (GRCm39) |
V687E |
probably damaging |
Het |
Dcaf4 |
A |
G |
12: 83,588,148 (GRCm39) |
D449G |
probably damaging |
Het |
Dhx38 |
T |
C |
8: 110,278,746 (GRCm39) |
Y1113C |
probably benign |
Het |
Fry |
A |
G |
5: 150,362,253 (GRCm39) |
I161V |
probably benign |
Het |
Gm17093 |
A |
C |
14: 44,758,984 (GRCm39) |
M169L |
unknown |
Het |
Gm20721 |
A |
G |
2: 174,187,295 (GRCm39) |
D999G |
probably damaging |
Het |
Grin2b |
T |
C |
6: 135,713,361 (GRCm39) |
H840R |
probably damaging |
Het |
Hoxc12 |
C |
A |
15: 102,845,755 (GRCm39) |
H156Q |
probably benign |
Het |
Htr3b |
T |
C |
9: 48,858,934 (GRCm39) |
D68G |
probably damaging |
Het |
Inpp5b |
T |
C |
4: 124,639,880 (GRCm39) |
V99A |
probably damaging |
Het |
Klhl42 |
C |
T |
6: 147,009,241 (GRCm39) |
T360M |
probably benign |
Het |
Lmo7 |
C |
T |
14: 102,031,713 (GRCm39) |
R36* |
probably null |
Het |
Lmod3 |
T |
G |
6: 97,229,513 (GRCm39) |
N7T |
probably damaging |
Het |
Malrd1 |
G |
A |
2: 16,106,768 (GRCm39) |
|
probably null |
Het |
Mthfd2l |
T |
A |
5: 91,148,425 (GRCm39) |
I284K |
possibly damaging |
Het |
Myo1e |
T |
A |
9: 70,234,448 (GRCm39) |
I267N |
probably damaging |
Het |
Or13c7d |
T |
C |
4: 43,770,112 (GRCm39) |
R300G |
probably damaging |
Het |
Or2y1g |
T |
A |
11: 49,171,314 (GRCm39) |
V113E |
possibly damaging |
Het |
Prkce |
T |
C |
17: 86,476,268 (GRCm39) |
V83A |
probably damaging |
Het |
Pxdn |
G |
T |
12: 30,051,983 (GRCm39) |
C540F |
probably damaging |
Het |
Resf1 |
A |
G |
6: 149,228,394 (GRCm39) |
E480G |
probably damaging |
Het |
Ryr2 |
T |
A |
13: 11,606,238 (GRCm39) |
E4448V |
possibly damaging |
Het |
Scn1a |
A |
T |
2: 66,119,455 (GRCm39) |
N1349K |
probably damaging |
Het |
Smarcc1 |
T |
C |
9: 109,979,033 (GRCm39) |
I172T |
possibly damaging |
Het |
Syt16 |
T |
C |
12: 74,269,437 (GRCm39) |
V92A |
possibly damaging |
Het |
Tenm4 |
A |
G |
7: 96,523,474 (GRCm39) |
Y1672C |
probably damaging |
Het |
Tmem131 |
A |
G |
1: 36,838,468 (GRCm39) |
Y1486H |
probably damaging |
Het |
Tmem132a |
A |
G |
19: 10,838,888 (GRCm39) |
|
probably benign |
Het |
Usp40 |
A |
T |
1: 87,921,920 (GRCm39) |
D314E |
probably damaging |
Het |
Vmn2r79 |
G |
A |
7: 86,686,481 (GRCm39) |
V621I |
probably benign |
Het |
Wnk4 |
A |
G |
11: 101,167,509 (GRCm39) |
|
probably benign |
Het |
Wwc1 |
C |
A |
11: 35,789,445 (GRCm39) |
|
probably null |
Het |
|
Other mutations in Carm1 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00981:Carm1
|
APN |
9 |
21,498,490 (GRCm39) |
missense |
possibly damaging |
0.62 |
IGL01360:Carm1
|
APN |
9 |
21,498,598 (GRCm39) |
missense |
probably benign |
0.19 |
IGL02218:Carm1
|
APN |
9 |
21,480,808 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02436:Carm1
|
APN |
9 |
21,490,758 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02601:Carm1
|
APN |
9 |
21,498,204 (GRCm39) |
missense |
probably damaging |
1.00 |
R0551:Carm1
|
UTSW |
9 |
21,491,787 (GRCm39) |
splice site |
probably null |
|
R0580:Carm1
|
UTSW |
9 |
21,494,880 (GRCm39) |
missense |
probably damaging |
1.00 |
R0724:Carm1
|
UTSW |
9 |
21,498,670 (GRCm39) |
missense |
probably damaging |
1.00 |
R0883:Carm1
|
UTSW |
9 |
21,480,887 (GRCm39) |
splice site |
probably benign |
|
R1390:Carm1
|
UTSW |
9 |
21,490,789 (GRCm39) |
missense |
probably damaging |
1.00 |
R1713:Carm1
|
UTSW |
9 |
21,497,785 (GRCm39) |
missense |
probably damaging |
0.97 |
R1950:Carm1
|
UTSW |
9 |
21,485,812 (GRCm39) |
missense |
probably benign |
0.01 |
R1960:Carm1
|
UTSW |
9 |
21,491,606 (GRCm39) |
missense |
probably benign |
0.40 |
R2402:Carm1
|
UTSW |
9 |
21,494,836 (GRCm39) |
missense |
probably damaging |
1.00 |
R2512:Carm1
|
UTSW |
9 |
21,486,708 (GRCm39) |
critical splice acceptor site |
probably null |
|
R2520:Carm1
|
UTSW |
9 |
21,494,893 (GRCm39) |
splice site |
probably null |
|
R2939:Carm1
|
UTSW |
9 |
21,490,692 (GRCm39) |
splice site |
probably null |
|
R2940:Carm1
|
UTSW |
9 |
21,490,692 (GRCm39) |
splice site |
probably null |
|
R3081:Carm1
|
UTSW |
9 |
21,490,692 (GRCm39) |
splice site |
probably null |
|
R3407:Carm1
|
UTSW |
9 |
21,497,478 (GRCm39) |
missense |
probably damaging |
1.00 |
R3434:Carm1
|
UTSW |
9 |
21,480,769 (GRCm39) |
missense |
probably damaging |
1.00 |
R3808:Carm1
|
UTSW |
9 |
21,498,258 (GRCm39) |
missense |
probably damaging |
1.00 |
R4504:Carm1
|
UTSW |
9 |
21,480,822 (GRCm39) |
missense |
probably damaging |
1.00 |
R4700:Carm1
|
UTSW |
9 |
21,498,480 (GRCm39) |
missense |
probably benign |
0.12 |
R5019:Carm1
|
UTSW |
9 |
21,490,807 (GRCm39) |
critical splice donor site |
probably null |
|
R5362:Carm1
|
UTSW |
9 |
21,498,655 (GRCm39) |
missense |
probably benign |
0.03 |
R5661:Carm1
|
UTSW |
9 |
21,498,295 (GRCm39) |
missense |
probably benign |
0.10 |
R5730:Carm1
|
UTSW |
9 |
21,491,636 (GRCm39) |
missense |
probably benign |
0.37 |
R5913:Carm1
|
UTSW |
9 |
21,498,848 (GRCm39) |
missense |
probably benign |
0.01 |
R5928:Carm1
|
UTSW |
9 |
21,486,598 (GRCm39) |
intron |
probably benign |
|
R6370:Carm1
|
UTSW |
9 |
21,498,815 (GRCm39) |
missense |
probably benign |
0.11 |
R6431:Carm1
|
UTSW |
9 |
21,494,373 (GRCm39) |
missense |
probably damaging |
1.00 |
R6555:Carm1
|
UTSW |
9 |
21,498,258 (GRCm39) |
missense |
probably damaging |
1.00 |
R7177:Carm1
|
UTSW |
9 |
21,458,323 (GRCm39) |
missense |
unknown |
|
R7235:Carm1
|
UTSW |
9 |
21,498,701 (GRCm39) |
critical splice donor site |
probably benign |
|
R7249:Carm1
|
UTSW |
9 |
21,497,505 (GRCm39) |
missense |
probably benign |
|
R7576:Carm1
|
UTSW |
9 |
21,497,832 (GRCm39) |
critical splice donor site |
probably null |
|
R7650:Carm1
|
UTSW |
9 |
21,491,668 (GRCm39) |
missense |
probably benign |
0.00 |
R7664:Carm1
|
UTSW |
9 |
21,498,286 (GRCm39) |
missense |
probably benign |
0.01 |
R8359:Carm1
|
UTSW |
9 |
21,480,765 (GRCm39) |
missense |
possibly damaging |
0.51 |
R8683:Carm1
|
UTSW |
9 |
21,497,464 (GRCm39) |
missense |
possibly damaging |
0.72 |
R8690:Carm1
|
UTSW |
9 |
21,480,808 (GRCm39) |
missense |
probably damaging |
1.00 |
R8821:Carm1
|
UTSW |
9 |
21,491,663 (GRCm39) |
missense |
probably damaging |
1.00 |
R8831:Carm1
|
UTSW |
9 |
21,491,663 (GRCm39) |
missense |
probably damaging |
1.00 |
R8947:Carm1
|
UTSW |
9 |
21,497,749 (GRCm39) |
missense |
probably damaging |
1.00 |
R8950:Carm1
|
UTSW |
9 |
21,490,789 (GRCm39) |
missense |
probably damaging |
1.00 |
R9242:Carm1
|
UTSW |
9 |
21,494,350 (GRCm39) |
missense |
probably damaging |
1.00 |
R9399:Carm1
|
UTSW |
9 |
21,486,791 (GRCm39) |
missense |
possibly damaging |
0.84 |
|
Posted On |
2013-11-05 |