Incidental Mutation 'IGL01409:Asxl1'
| ID |
79939 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Asxl1
|
| Ensembl Gene |
ENSMUSG00000042548 |
| Gene Name |
ASXL transcriptional regulator 1 |
| Synonyms |
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
IGL01409
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
2 |
| Chromosomal Location |
153187750-153245927 bp(+) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
T to C
at 153234860 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000154224
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000109790]
[ENSMUST00000227428]
|
| AlphaFold |
P59598 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000109790
|
| SMART Domains |
Protein: ENSMUSP00000105413
Gene: ENSMUSG00000042548
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:HARE-HTH
|
11 |
83 |
1.6e-20 |
PFAM |
|
low complexity region
|
199 |
209 |
N/A |
INTRINSIC |
|
Pfam:ASXH
|
236 |
361 |
5.9e-40 |
PFAM |
|
low complexity region
|
411 |
422 |
N/A |
INTRINSIC |
|
low complexity region
|
639 |
667 |
N/A |
INTRINSIC |
|
low complexity region
|
705 |
716 |
N/A |
INTRINSIC |
|
low complexity region
|
848 |
860 |
N/A |
INTRINSIC |
|
low complexity region
|
986 |
1000 |
N/A |
INTRINSIC |
|
Pfam:PHD_3
|
1446 |
1512 |
6.3e-23 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000138571
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000144722
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000227428
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is similar to the Drosophila additional sex combs gene, which encodes a chromatin-binding protein required for normal determination of segment identity in the developing embryo. The protein is a member of the Polycomb group of proteins, which are necessary for the maintenance of stable repression of homeotic and other loci. The protein is thought to disrupt chromatin in localized areas, enhancing transcription of certain genes while repressing the transcription of other genes. The protein encoded by this gene functions as a ligand-dependent co-activator for retinoic acid receptor in cooperation with nuclear receptor coactivator 1. Mutations in this gene are associated with myelodysplastic syndromes and chronic myelomonocytic leukemia. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2009]
PHENOTYPE: Disruption of this gene causes alterations in lymphocyte development in adult mice. Mice homozygous for a different knock-out allele exhibit complete lethality. Mice heterozygous for this allele exhibit eye opacity and abnormal vertebrae morphology. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 43 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abtb3 |
C |
T |
10: 85,494,029 (GRCm39) |
A1049V |
possibly damaging |
Het |
| Arhgap26 |
C |
T |
18: 39,243,504 (GRCm39) |
|
probably benign |
Het |
| Atm |
A |
T |
9: 53,410,471 (GRCm39) |
V1037E |
probably benign |
Het |
| Bmp6 |
A |
G |
13: 38,669,865 (GRCm39) |
N383S |
probably damaging |
Het |
| Btf3l4 |
A |
C |
4: 108,676,394 (GRCm39) |
S103R |
probably damaging |
Het |
| Cadps2 |
T |
C |
6: 23,587,440 (GRCm39) |
D321G |
probably damaging |
Het |
| Col24a1 |
G |
A |
3: 145,244,319 (GRCm39) |
S1531N |
probably benign |
Het |
| Cpb1 |
T |
A |
3: 20,303,969 (GRCm39) |
Y365F |
possibly damaging |
Het |
| Dpp6 |
T |
C |
5: 27,762,599 (GRCm39) |
Y238H |
probably damaging |
Het |
| Epha6 |
G |
A |
16: 59,476,100 (GRCm39) |
R1089* |
probably null |
Het |
| Fga |
T |
C |
3: 82,940,059 (GRCm39) |
F571S |
probably damaging |
Het |
| Focad |
A |
G |
4: 88,260,542 (GRCm39) |
T933A |
unknown |
Het |
| Gm57858 |
T |
A |
3: 36,080,077 (GRCm39) |
M227L |
possibly damaging |
Het |
| Gria2 |
A |
G |
3: 80,615,004 (GRCm39) |
|
probably null |
Het |
| Hnrnpul1 |
T |
C |
7: 25,424,077 (GRCm39) |
N725S |
unknown |
Het |
| Ik |
A |
T |
18: 36,889,974 (GRCm39) |
K534N |
probably damaging |
Het |
| Itga8 |
T |
C |
2: 12,196,525 (GRCm39) |
T631A |
probably benign |
Het |
| Kcnip1 |
G |
T |
11: 33,580,593 (GRCm39) |
D214E |
probably benign |
Het |
| Kcnk10 |
A |
T |
12: 98,456,322 (GRCm39) |
Y170N |
probably damaging |
Het |
| Lalba |
A |
G |
15: 98,379,948 (GRCm39) |
|
probably null |
Het |
| Ly75 |
A |
T |
2: 60,152,036 (GRCm39) |
|
probably null |
Het |
| Myh10 |
T |
C |
11: 68,698,045 (GRCm39) |
L1629P |
probably damaging |
Het |
| Myo15b |
C |
A |
11: 115,760,330 (GRCm39) |
C1127* |
probably null |
Het |
| Neurl4 |
T |
G |
11: 69,797,925 (GRCm39) |
N728K |
probably damaging |
Het |
| Nrxn3 |
T |
A |
12: 89,477,128 (GRCm39) |
F801Y |
probably damaging |
Het |
| Nup214 |
G |
T |
2: 31,916,943 (GRCm39) |
|
probably null |
Het |
| Obscn |
G |
A |
11: 58,921,884 (GRCm39) |
R6624C |
probably damaging |
Het |
| Or2g1 |
T |
C |
17: 38,106,413 (GRCm39) |
F26S |
probably damaging |
Het |
| Pdk1 |
A |
G |
2: 71,726,123 (GRCm39) |
T344A |
probably benign |
Het |
| Pitx2 |
C |
A |
3: 129,008,413 (GRCm39) |
S63Y |
probably damaging |
Het |
| Ppara |
A |
C |
15: 85,661,844 (GRCm39) |
L28F |
probably damaging |
Het |
| Rad54l |
G |
A |
4: 115,963,074 (GRCm39) |
T308I |
probably damaging |
Het |
| Sbds |
T |
C |
5: 130,282,907 (GRCm39) |
E7G |
probably damaging |
Het |
| Slc22a19 |
T |
C |
19: 7,688,495 (GRCm39) |
I22V |
probably benign |
Het |
| Slfn10-ps |
T |
C |
11: 82,926,322 (GRCm39) |
|
noncoding transcript |
Het |
| Spag4 |
T |
C |
2: 155,911,252 (GRCm39) |
S396P |
possibly damaging |
Het |
| Spef2 |
C |
A |
15: 9,716,499 (GRCm39) |
L362F |
probably damaging |
Het |
| Srebf2 |
A |
G |
15: 82,055,419 (GRCm39) |
T208A |
probably damaging |
Het |
| Ssc5d |
A |
G |
7: 4,945,808 (GRCm39) |
T947A |
probably benign |
Het |
| Tdp1 |
T |
C |
12: 99,875,940 (GRCm39) |
I297T |
possibly damaging |
Het |
| Tent5c |
A |
T |
3: 100,380,485 (GRCm39) |
D90E |
probably damaging |
Het |
| Tsen2 |
T |
C |
6: 115,536,555 (GRCm39) |
Y104H |
possibly damaging |
Het |
| Was |
G |
A |
X: 7,954,055 (GRCm39) |
R229C |
probably damaging |
Het |
|
| Other mutations in Asxl1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01432:Asxl1
|
APN |
2 |
153,242,125 (GRCm39) |
missense |
probably benign |
0.38 |
|
IGL01543:Asxl1
|
APN |
2 |
153,243,404 (GRCm39) |
missense |
probably benign |
0.11 |
|
IGL02355:Asxl1
|
APN |
2 |
153,243,706 (GRCm39) |
missense |
probably benign |
0.34 |
|
IGL02362:Asxl1
|
APN |
2 |
153,243,706 (GRCm39) |
missense |
probably benign |
0.34 |
|
IGL02645:Asxl1
|
APN |
2 |
153,234,777 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
IGL02696:Asxl1
|
APN |
2 |
153,242,115 (GRCm39) |
nonsense |
probably null |
|
|
IGL03365:Asxl1
|
APN |
2 |
153,243,674 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03372:Asxl1
|
APN |
2 |
153,242,333 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL03377:Asxl1
|
APN |
2 |
153,238,700 (GRCm39) |
missense |
probably damaging |
1.00 |
|
astrophel
|
UTSW |
2 |
153,242,026 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
hairbrush
|
UTSW |
2 |
153,242,644 (GRCm39) |
missense |
possibly damaging |
0.55 |
|
R0044:Asxl1
|
UTSW |
2 |
153,242,129 (GRCm39) |
missense |
probably benign |
0.06 |
|
R0044:Asxl1
|
UTSW |
2 |
153,242,129 (GRCm39) |
missense |
probably benign |
0.06 |
|
R0600:Asxl1
|
UTSW |
2 |
153,241,824 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0659:Asxl1
|
UTSW |
2 |
153,242,644 (GRCm39) |
missense |
possibly damaging |
0.55 |
|
R0661:Asxl1
|
UTSW |
2 |
153,242,644 (GRCm39) |
missense |
possibly damaging |
0.55 |
|
R0684:Asxl1
|
UTSW |
2 |
153,239,442 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1606:Asxl1
|
UTSW |
2 |
153,242,375 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1747:Asxl1
|
UTSW |
2 |
153,235,374 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R1796:Asxl1
|
UTSW |
2 |
153,243,526 (GRCm39) |
missense |
probably benign |
0.31 |
|
R1914:Asxl1
|
UTSW |
2 |
153,243,826 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2099:Asxl1
|
UTSW |
2 |
153,194,187 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R2373:Asxl1
|
UTSW |
2 |
153,243,820 (GRCm39) |
missense |
probably benign |
0.13 |
|
R2910:Asxl1
|
UTSW |
2 |
153,242,959 (GRCm39) |
missense |
probably benign |
0.00 |
|
R3620:Asxl1
|
UTSW |
2 |
153,199,075 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3701:Asxl1
|
UTSW |
2 |
153,241,264 (GRCm39) |
missense |
probably benign |
0.04 |
|
R4200:Asxl1
|
UTSW |
2 |
153,242,026 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R4773:Asxl1
|
UTSW |
2 |
153,243,905 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4902:Asxl1
|
UTSW |
2 |
153,241,751 (GRCm39) |
missense |
probably benign |
0.02 |
|
R5100:Asxl1
|
UTSW |
2 |
153,239,851 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5102:Asxl1
|
UTSW |
2 |
153,242,875 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5166:Asxl1
|
UTSW |
2 |
153,243,041 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5421:Asxl1
|
UTSW |
2 |
153,241,504 (GRCm39) |
missense |
probably benign |
0.04 |
|
R5701:Asxl1
|
UTSW |
2 |
153,241,409 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5861:Asxl1
|
UTSW |
2 |
153,241,310 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5973:Asxl1
|
UTSW |
2 |
153,243,931 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R6384:Asxl1
|
UTSW |
2 |
153,233,744 (GRCm39) |
critical splice donor site |
probably null |
|
|
R7023:Asxl1
|
UTSW |
2 |
153,242,469 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7028:Asxl1
|
UTSW |
2 |
153,242,027 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7176:Asxl1
|
UTSW |
2 |
153,243,908 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7297:Asxl1
|
UTSW |
2 |
153,239,355 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7378:Asxl1
|
UTSW |
2 |
153,243,913 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7464:Asxl1
|
UTSW |
2 |
153,239,705 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7678:Asxl1
|
UTSW |
2 |
153,242,572 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7686:Asxl1
|
UTSW |
2 |
153,233,534 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7789:Asxl1
|
UTSW |
2 |
153,241,943 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7838:Asxl1
|
UTSW |
2 |
153,238,733 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7898:Asxl1
|
UTSW |
2 |
153,241,854 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R8281:Asxl1
|
UTSW |
2 |
153,241,321 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8354:Asxl1
|
UTSW |
2 |
153,235,345 (GRCm39) |
missense |
probably benign |
0.40 |
|
R8383:Asxl1
|
UTSW |
2 |
153,235,639 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8995:Asxl1
|
UTSW |
2 |
153,235,886 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9183:Asxl1
|
UTSW |
2 |
153,239,840 (GRCm39) |
missense |
probably damaging |
0.99 |
|
X0024:Asxl1
|
UTSW |
2 |
153,243,905 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Posted On |
2013-11-05 |
Incidental Mutation