Mutagenetix > Incidental Mutation

Incidental Mutation 'R0931:Vmn2r49'

80881

Institutional Source

Beutler Lab

Gene Symbol

Vmn2r49

Ensembl Gene

ENSMUSG00000096180

Gene Name

vomeronasal 2, receptor 49

Synonyms

MMRRC Submission

039075-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.108) question?

Stock #

R0931 (G1)

Quality Score

142

Status

Validated

Chromosome

Chromosomal Location

9710172-9726066 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 9720325 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Valine at position 389 (M389V)

Ref Sequence

ENSEMBL: ENSMUSP00000104190 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000108550]

AlphaFold

D3Z6L3

Predicted Effect

possibly damaging
Transcript: ENSMUST00000108550
AA Change: M389V

PolyPhen 2 Score 0.552 (Sensitivity: 0.88; Specificity: 0.91)

SMART Domains

Protein: ENSMUSP00000104190
Gene: ENSMUSG00000096180
AA Change: M389V

Domain	Start	End	E-Value	Type
signal peptide	1	18	N/A	INTRINSIC
Pfam:ANF_receptor	73	469	1.4e-33	PFAM
Pfam:NCD3G	512	565	5.1e-21	PFAM
Pfam:7tm_3	598	833	3.5e-55	PFAM

Meta Mutation Damage Score

0.1795

Coding Region Coverage

1x: 99.4%
3x: 98.9%
10x: 97.7%
20x: 96.0%

Validation Efficiency

100% (42/42)

Allele List at MGI

Other mutations in this stock

Total: 40 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamtsl1	G	A	4: 86,168,084 (GRCm39)	A476T	probably benign	Het
Ajm1	T	C	2: 25,468,501 (GRCm39)	E470G	possibly damaging	Het
Aknad1	T	C	3: 108,659,339 (GRCm39)	S118P	probably damaging	Het
Arhgap20	A	G	9: 51,728,041 (GRCm39)	T85A	probably benign	Het
Astn2	A	G	4: 65,566,530 (GRCm39)	L824P	probably damaging	Het
Ccr1	C	A	9: 123,763,827 (GRCm39)	K234N	probably damaging	Het
Cfap46	T	C	7: 139,235,757 (GRCm39)	R203G	probably damaging	Het
Col8a1	A	G	16: 57,448,931 (GRCm39)	I193T	unknown	Het
Cpa2	T	C	6: 30,552,070 (GRCm39)		probably benign	Het
Crabp1	T	C	9: 54,675,717 (GRCm39)	L100P	possibly damaging	Het
Cspp1	A	T	1: 10,174,511 (GRCm39)	R655W	probably damaging	Het
Ddx1	A	T	12: 13,287,818 (GRCm39)		probably benign	Het
Dnah7b	T	G	1: 46,138,772 (GRCm39)		probably benign	Het
Dzip3	A	G	16: 48,771,921 (GRCm39)	S583P	probably damaging	Het
Exosc1	A	G	19: 41,921,676 (GRCm39)		probably benign	Het
Fhip1a	A	G	3: 85,580,550 (GRCm39)	S552P	probably benign	Het
Gas7	A	T	11: 67,543,751 (GRCm39)		probably benign	Het
Gss	A	T	2: 155,409,609 (GRCm39)		probably benign	Het
Hdhd3	G	A	4: 62,417,757 (GRCm39)	R140*	probably null	Het
Irx2	T	A	13: 72,779,675 (GRCm39)	S320T	possibly damaging	Het
Kcnf1	T	C	12: 17,225,142 (GRCm39)	S360G	possibly damaging	Het
Klk1b4	T	C	7: 43,860,480 (GRCm39)	L166P	probably damaging	Het
Klri1	A	T	6: 129,674,381 (GRCm39)		probably benign	Het
Mettl27	T	C	5: 134,963,285 (GRCm39)		probably benign	Het
Myrfl	T	A	10: 116,675,354 (GRCm39)	H193L	probably benign	Het
Nbas	C	T	12: 13,381,115 (GRCm39)		probably benign	Het
Or10ac1	C	A	6: 42,515,020 (GRCm39)	R312L	probably benign	Het
Or52b2	A	T	7: 104,986,736 (GRCm39)	Y62*	probably null	Het
Papolg	A	G	11: 23,832,257 (GRCm39)	I177T	probably damaging	Het
Pdcd1	A	G	1: 93,967,238 (GRCm39)	V220A	probably benign	Het
Psmc1	T	C	12: 100,085,341 (GRCm39)	L234P	probably damaging	Het
Rasa2	A	T	9: 96,434,457 (GRCm39)	M610K	possibly damaging	Het
Ryr3	A	G	2: 112,484,047 (GRCm39)	F3930S	probably damaging	Het
Sacs	G	A	14: 61,440,944 (GRCm39)	V997I	probably benign	Het
Setdb2	A	G	14: 59,660,945 (GRCm39)		probably benign	Het
Ssu2	C	A	6: 112,361,359 (GRCm39)	L32F	probably damaging	Het
Taar1	A	T	10: 23,797,181 (GRCm39)	N293I	probably damaging	Het
Ttn	A	G	2: 76,611,846 (GRCm39)		probably benign	Het
Wdr7	T	C	18: 63,998,371 (GRCm39)	V1106A	probably benign	Het
Zfp324	A	G	7: 12,700,185 (GRCm39)	I15V	probably benign	Het

Other mutations in Vmn2r49

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01800:Vmn2r49	APN	7	9,710,601 (GRCm39)	nonsense	probably null
IGL01892:Vmn2r49	APN	7	9,718,690 (GRCm39)	missense	probably benign	0.00
IGL02505:Vmn2r49	APN	7	9,710,378 (GRCm39)	missense	probably benign	0.27
IGL03345:Vmn2r49	APN	7	9,718,621 (GRCm39)	missense	probably damaging	1.00
PIT4434001:Vmn2r49	UTSW	7	9,710,762 (GRCm39)	missense	probably damaging	1.00
PIT4520001:Vmn2r49	UTSW	7	9,722,988 (GRCm39)	missense	probably benign	0.06
R0367:Vmn2r49	UTSW	7	9,710,357 (GRCm39)	missense	probably damaging	1.00
R0609:Vmn2r49	UTSW	7	9,710,233 (GRCm39)	missense	probably benign	0.40
R1594:Vmn2r49	UTSW	7	9,710,550 (GRCm39)	missense	probably damaging	1.00
R1969:Vmn2r49	UTSW	7	9,720,235 (GRCm39)	missense	probably damaging	0.99
R4831:Vmn2r49	UTSW	7	9,720,352 (GRCm39)	missense	probably benign
R4944:Vmn2r49	UTSW	7	9,722,959 (GRCm39)	missense	probably benign
R4945:Vmn2r49	UTSW	7	9,720,214 (GRCm39)	nonsense	probably null
R5109:Vmn2r49	UTSW	7	9,710,204 (GRCm39)	missense	probably benign	0.01
R5141:Vmn2r49	UTSW	7	9,720,300 (GRCm39)	missense	probably benign	0.01
R5778:Vmn2r49	UTSW	7	9,710,274 (GRCm39)	missense	probably damaging	1.00
R6168:Vmn2r49	UTSW	7	9,718,713 (GRCm39)	missense	probably benign	0.01
R6513:Vmn2r49	UTSW	7	9,710,524 (GRCm39)	missense	probably damaging	0.99
R7347:Vmn2r49	UTSW	7	9,720,741 (GRCm39)	missense	probably benign	0.00
R7464:Vmn2r49	UTSW	7	9,722,820 (GRCm39)	missense	probably benign	0.03
R7495:Vmn2r49	UTSW	7	9,710,826 (GRCm39)	nonsense	probably null
R7750:Vmn2r49	UTSW	7	9,710,185 (GRCm39)	missense	probably damaging	1.00
R8031:Vmn2r49	UTSW	7	9,720,408 (GRCm39)	missense	possibly damaging	0.67
R9158:Vmn2r49	UTSW	7	9,722,835 (GRCm39)	missense	probably damaging	1.00
R9347:Vmn2r49	UTSW	7	9,718,674 (GRCm39)	missense	probably benign	0.00
R9553:Vmn2r49	UTSW	7	9,720,849 (GRCm39)	missense	probably benign	0.41

Predicted Primers

PCR Primer
(F):5'- TGGCAGAATCACTGGATTACGCTAATG -3'
(R):5'- AGACATGGTTCCATCTCAGAAACACAG -3'

Sequencing Primer
(F):5'- TCTGGGCATCTGAAAGACTC -3'
(R):5'- GAACAGTTCATCTGATGCCTC -3'

Posted On

2013-11-07