Mutagenetix > Incidental Mutation

Incidental Mutation 'R0884:Nmt2'

81001

Institutional Source

Beutler Lab

Gene Symbol

Nmt2

Ensembl Gene

ENSMUSG00000026643

Gene Name

N-myristoyltransferase 2

Synonyms

hNMT-2, A930001K02Rik

MMRRC Submission

039051-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.103) question?

Stock #

R0884 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

3285249-3329914 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

A to T at 3315822 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Stop codon at position 271 (R271*)

Ref Sequence

ENSEMBL: ENSMUSP00000100054 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000081932] [ENSMUST00000091504] [ENSMUST00000102989]

AlphaFold

O70311

Predicted Effect

probably null
Transcript: ENSMUST00000081932
AA Change: R302*

SMART Domains

Protein: ENSMUSP00000080600
Gene: ENSMUSG00000026643
AA Change: R302*

Domain	Start	End	E-Value	Type
low complexity region	5	16	N/A	INTRINSIC
low complexity region	46	58	N/A	INTRINSIC
Pfam:NMT	170	327	1e-78	PFAM
Pfam:NMT_C	341	528	2.9e-83	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000091504
AA Change: R258*

SMART Domains

Protein: ENSMUSP00000089085
Gene: ENSMUSG00000026643
AA Change: R258*

Domain	Start	End	E-Value	Type
low complexity region	19	30	N/A	INTRINSIC
Pfam:NMT	124	283	2e-84	PFAM
Pfam:NMT_C	297	484	1.4e-87	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000102989
AA Change: R271*

SMART Domains

Protein: ENSMUSP00000100054
Gene: ENSMUSG00000026643
AA Change: R271*

Domain	Start	End	E-Value	Type
low complexity region	5	16	N/A	INTRINSIC
low complexity region	46	58	N/A	INTRINSIC
Pfam:NMT	137	296	7.8e-85	PFAM
Pfam:NMT_C	310	497	6.4e-88	PFAM

Coding Region Coverage

1x: 99.4%
3x: 98.8%
10x: 97.4%
20x: 94.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes one of two N-myristoyltransferase proteins. N-terminal myristoylation is a lipid modification that is involved in regulating the function and localization of signaling proteins. The encoded protein catalyzes the addition of a myristoyl group to the N-terminal glycine residue of many signaling proteins, including the human immunodeficiency virus type 1 (HIV-1) proteins, Gag and Nef. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Apr 2015]
PHENOTYPE: Mice homozygous for a conditional allele knocked out in T cells exhibit reduced T cell, double positive T cell and single positive T cell numbers. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcc4	A	T	14: 118,790,700 (GRCm39)	I844N	possibly damaging	Het
Acbd3	CGAGGAGGAGGAGGAGGA	CGAGGAGGAGGAGGA	1: 180,574,624 (GRCm39)		probably benign	Het
Adam6b	A	T	12: 113,454,615 (GRCm39)	R477S	probably damaging	Het
Aqp7	T	A	4: 41,034,929 (GRCm39)	T175S	possibly damaging	Het
Bclaf1	A	T	10: 20,197,822 (GRCm39)	R22*	probably null	Het
Bend7	A	T	2: 4,749,055 (GRCm39)	K57N	probably damaging	Het
Bicc1	A	C	10: 70,794,677 (GRCm39)	V160G	probably damaging	Het
Cacna2d4	C	T	6: 119,284,247 (GRCm39)	R745W	probably damaging	Het
Cep72	A	G	13: 74,203,000 (GRCm39)		probably null	Het
Cobl	A	G	11: 12,325,908 (GRCm39)	I196T	possibly damaging	Het
Cux1	T	G	5: 136,336,689 (GRCm39)	D941A	probably damaging	Het
Cyp2a12	T	C	7: 26,731,967 (GRCm39)	I236T	probably benign	Het
Dennd2b	A	G	7: 109,156,552 (GRCm39)	L66P	probably damaging	Het
Depdc5	T	A	5: 33,075,322 (GRCm39)	V500D	possibly damaging	Het
Dhx35	T	C	2: 158,673,631 (GRCm39)	I354T	probably damaging	Het
Dnase1l2	A	G	17: 24,660,854 (GRCm39)	V170A	possibly damaging	Het
Eif4g3	C	A	4: 137,879,087 (GRCm39)	N588K	possibly damaging	Het
Epsti1	A	T	14: 78,168,715 (GRCm39)	R117S	probably damaging	Het
Fam53a	T	C	5: 33,758,160 (GRCm39)	E321G	probably benign	Het
Fat4	C	A	3: 39,037,007 (GRCm39)	T3553K	possibly damaging	Het
Fer1l4	T	C	2: 155,861,233 (GRCm39)	T1978A	possibly damaging	Het
Gabarapl2	A	T	8: 112,669,137 (GRCm39)	I32F	probably damaging	Het
Gje1	G	T	10: 14,592,484 (GRCm39)	S99R	possibly damaging	Het
Gosr1	A	G	11: 76,620,972 (GRCm39)	I239T	probably benign	Het
Gpnmb	T	C	6: 49,024,847 (GRCm39)	V293A	possibly damaging	Het
Hyi	T	A	4: 118,217,414 (GRCm39)	I62N	probably damaging	Het
Il4ra	A	G	7: 125,173,835 (GRCm39)	I267V	probably damaging	Het
Kcnd2	A	T	6: 21,216,540 (GRCm39)	Q81H	probably benign	Het
Ksr1	A	T	11: 78,912,329 (GRCm39)	H675Q	possibly damaging	Het
Lpcat4	A	G	2: 112,073,077 (GRCm39)	N208S	probably damaging	Het
Muc17	T	A	5: 137,171,146 (GRCm39)	T162S	possibly damaging	Het
Mup3	T	A	4: 62,005,411 (GRCm39)	I20F	possibly damaging	Het
Nebl	A	C	2: 17,415,929 (GRCm39)	S327A	probably benign	Het
Nfatc4	A	C	14: 56,064,101 (GRCm39)	D126A	probably damaging	Het
Nol7	G	A	13: 43,554,091 (GRCm39)	V133I	probably benign	Het
Or1e1c	A	T	11: 73,265,715 (GRCm39)	I47F	probably benign	Het
Or51ag1	C	T	7: 103,156,069 (GRCm39)	W28*	probably null	Het
Pde4d	A	T	13: 110,087,474 (GRCm39)	I670L	probably damaging	Het
Phlpp1	T	A	1: 106,317,395 (GRCm39)		probably null	Het
Pigz	A	G	16: 31,760,794 (GRCm39)		probably null	Het
Pramel21	A	G	4: 143,341,754 (GRCm39)	D61G	probably benign	Het
Prrg4	A	T	2: 104,669,707 (GRCm39)	Y137N	probably damaging	Het
Rbm28	A	T	6: 29,155,153 (GRCm39)	S217T	possibly damaging	Het
Ryr2	T	C	13: 11,569,415 (GRCm39)	D4963G	probably damaging	Het
Slc35b2	T	A	17: 45,877,751 (GRCm39)	F293I	probably damaging	Het
Slc35f1	A	T	10: 52,965,443 (GRCm39)	Y286F	probably damaging	Het
Slc6a18	G	T	13: 73,815,156 (GRCm39)	A384D	probably damaging	Het
Syt9	A	G	7: 107,035,768 (GRCm39)	I262V	probably damaging	Het
Tln2	C	A	9: 67,278,015 (GRCm39)	R333L	probably damaging	Het
Tnrc6b	ACAGCAGCAGCAGCAGCAGCAG	ACAGCAGCAGCAGCAGCAG	15: 80,786,756 (GRCm39)		probably benign	Het
Ttn	G	A	2: 76,581,410 (GRCm39)	T14834I	possibly damaging	Het
Uggt1	T	C	1: 36,214,159 (GRCm39)	S177G	probably benign	Het
Zfp454	A	G	11: 50,764,764 (GRCm39)	S223P	probably benign	Het
Zmat4	A	G	8: 24,505,143 (GRCm39)	T128A	probably benign	Het

Other mutations in Nmt2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00783:Nmt2	APN	2	3,315,846 (GRCm39)	missense	probably damaging	1.00
IGL00784:Nmt2	APN	2	3,315,846 (GRCm39)	missense	probably damaging	1.00
IGL01871:Nmt2	APN	2	3,313,711 (GRCm39)	missense	probably damaging	1.00
IGL02617:Nmt2	APN	2	3,315,750 (GRCm39)	missense	probably benign	0.15
Faul	UTSW	2	3,306,341 (GRCm39)	splice site	probably null
ANU05:Nmt2	UTSW	2	3,315,731 (GRCm39)	missense	probably benign
R0278:Nmt2	UTSW	2	3,326,424 (GRCm39)	missense	probably benign	0.00
R0524:Nmt2	UTSW	2	3,306,474 (GRCm39)	missense	probably benign
R0743:Nmt2	UTSW	2	3,315,822 (GRCm39)	nonsense	probably null
R1895:Nmt2	UTSW	2	3,323,672 (GRCm39)	missense	probably benign	0.11
R1946:Nmt2	UTSW	2	3,323,672 (GRCm39)	missense	probably benign	0.11
R1957:Nmt2	UTSW	2	3,326,419 (GRCm39)	missense	possibly damaging	0.95
R2037:Nmt2	UTSW	2	3,310,618 (GRCm39)	missense	probably damaging	1.00
R2656:Nmt2	UTSW	2	3,308,050 (GRCm39)	missense	probably benign
R3422:Nmt2	UTSW	2	3,285,425 (GRCm39)	missense	possibly damaging	0.82
R3835:Nmt2	UTSW	2	3,315,723 (GRCm39)	splice site	probably benign
R3955:Nmt2	UTSW	2	3,313,535 (GRCm39)	missense	probably benign	0.00
R4701:Nmt2	UTSW	2	3,323,678 (GRCm39)	missense	probably benign
R5032:Nmt2	UTSW	2	3,285,429 (GRCm39)	missense	probably benign
R6373:Nmt2	UTSW	2	3,325,988 (GRCm39)	missense	probably benign	0.05
R6396:Nmt2	UTSW	2	3,315,738 (GRCm39)	missense	probably benign	0.18
R6410:Nmt2	UTSW	2	3,317,215 (GRCm39)	missense	probably damaging	1.00
R6863:Nmt2	UTSW	2	3,306,341 (GRCm39)	splice site	probably null
R6865:Nmt2	UTSW	2	3,315,766 (GRCm39)	missense	probably damaging	1.00
R7100:Nmt2	UTSW	2	3,313,950 (GRCm39)	missense	probably benign
R7139:Nmt2	UTSW	2	3,285,352 (GRCm39)	missense	probably benign	0.01
R7516:Nmt2	UTSW	2	3,313,767 (GRCm39)	missense	probably damaging	1.00
R9098:Nmt2	UTSW	2	3,306,315 (GRCm39)	intron	probably benign
R9581:Nmt2	UTSW	2	3,317,212 (GRCm39)	missense	possibly damaging	0.80
X0067:Nmt2	UTSW	2	3,325,998 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- GAGCTTGCAAAGTGCCTACACAATG -3'
(R):5'- GCAAGATGGTAGTAAGCAACACCCC -3'

Sequencing Primer
(F):5'- GTGCCTACACAATGTGGTTTTTTTC -3'
(R):5'- ccccatcccaccccatc -3'

Posted On

2013-11-07