Mutagenetix > Incidental Mutation

Incidental Mutation 'R0962:Ms4a6c'

81327

Institutional Source

Beutler Lab

Gene Symbol

Ms4a6c

Ensembl Gene

ENSMUSG00000079419

Gene Name

membrane-spanning 4-domains, subfamily A, member 6C

Synonyms

2200009H22Rik, 2210417N07Rik

MMRRC Submission

039091-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.049) question?

Stock #

R0962 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

11446730-11459556 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 11448506 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Methionine at position 13 (T13M)

Ref Sequence

ENSEMBL: ENSMUSP00000132425 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000165310]

AlphaFold

Q99N08

Predicted Effect

probably benign
Transcript: ENSMUST00000165310
AA Change: T13M

PolyPhen 2 Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000132425
Gene: ENSMUSG00000079419
AA Change: T13M

Domain	Start	End	E-Value	Type
Pfam:CD20	47	207	3.2e-46	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000186054

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000187462

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000192201

Meta Mutation Damage Score

0.0898

Coding Region Coverage

1x: 99.8%
3x: 99.3%
10x: 97.9%
20x: 96.0%

Validation Efficiency

100% (56/56)

Allele List at MGI

Other mutations in this stock

Total: 53 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acaca	G	A	11: 84,202,129 (GRCm39)	A196T	probably damaging	Het
Adamtsl4	T	A	3: 95,591,798 (GRCm39)	R97*	probably null	Het
Adgrv1	T	C	13: 81,553,465 (GRCm39)	I5470V	probably benign	Het
Afg3l2	T	C	18: 67,538,497 (GRCm39)	T754A	possibly damaging	Het
Agfg1	T	C	1: 82,864,117 (GRCm39)	F395S	probably damaging	Het
Ahnak	A	G	19: 8,990,212 (GRCm39)		probably benign	Het
Alkbh2	T	C	5: 114,262,014 (GRCm39)	K239E	possibly damaging	Het
Ankmy1	A	T	1: 92,827,290 (GRCm39)	C87*	probably null	Het
Apob	A	G	12: 8,039,191 (GRCm39)	I461V	probably damaging	Het
Arap1	C	T	7: 101,034,121 (GRCm39)	P188S	possibly damaging	Het
Atp12a	G	A	14: 56,605,870 (GRCm39)	E64K	probably damaging	Het
Brca1	A	T	11: 101,416,192 (GRCm39)	H647Q	possibly damaging	Het
Cachd1	A	G	4: 100,840,498 (GRCm39)		probably benign	Het
Cep57	A	T	9: 13,720,039 (GRCm39)	V429D	possibly damaging	Het
Cfap299	T	C	5: 98,714,420 (GRCm39)		probably benign	Het
Dip2a	T	C	10: 76,128,266 (GRCm39)		probably benign	Het
Dmxl2	A	T	9: 54,353,696 (GRCm39)	N757K	probably damaging	Het
Dock7	G	A	4: 98,833,432 (GRCm39)	T1953I	possibly damaging	Het
Ebf3	T	C	7: 136,826,932 (GRCm39)	T111A	probably damaging	Het
Ercc4	T	C	16: 12,948,010 (GRCm39)	I319T	probably damaging	Het
Fat1	T	C	8: 45,486,363 (GRCm39)		probably benign	Het
Gucy2g	C	T	19: 55,198,716 (GRCm39)	W809*	probably null	Het
Hhipl1	A	G	12: 108,293,980 (GRCm39)	K629E	probably benign	Het
Hmbox1	A	T	14: 65,134,223 (GRCm39)	S126T	probably benign	Het
Htr1a	A	G	13: 105,580,832 (GRCm39)	N24S	probably benign	Het
Htra3	T	A	5: 35,825,700 (GRCm39)	I185F	probably damaging	Het
Impg1	C	T	9: 80,289,023 (GRCm39)	D345N	probably benign	Het
Iqca1	C	A	1: 90,070,453 (GRCm39)	G133V	probably null	Het
Kdm7a	A	G	6: 39,124,128 (GRCm39)	V720A	probably benign	Het
Kirrel3	A	G	9: 34,912,293 (GRCm39)	D212G	possibly damaging	Het
Lgals3bp	A	T	11: 118,283,846 (GRCm39)	*139K	probably null	Het
Lrp11	T	A	10: 7,466,060 (GRCm39)	V82D	probably benign	Het
Mcf2l	T	C	8: 13,051,964 (GRCm39)	Y425H	probably benign	Het
Mfn2	T	C	4: 147,966,658 (GRCm39)	N511S	probably benign	Het
Mical2	T	C	7: 111,979,624 (GRCm39)	S108P	probably damaging	Het
Naip2	C	A	13: 100,315,893 (GRCm39)	V296F	probably damaging	Het
Or2d36	T	A	7: 106,747,294 (GRCm39)	F257Y	possibly damaging	Het
Or51a5	A	G	7: 102,771,217 (GRCm39)	V254A	possibly damaging	Het
Or7e175	T	A	9: 20,048,834 (GRCm39)	C141S	probably damaging	Het
P3h2	T	C	16: 25,815,998 (GRCm39)	M172V	probably benign	Het
Pcolce2	T	G	9: 95,552,087 (GRCm39)	N73K	probably benign	Het
Pla2g4d	A	G	2: 120,111,098 (GRCm39)		probably null	Het
Ppfia3	A	G	7: 44,997,146 (GRCm39)		probably benign	Het
Ptprcap	A	G	19: 4,206,463 (GRCm39)	D182G	possibly damaging	Het
Rabgap1	T	C	2: 37,450,481 (GRCm39)		probably benign	Het
Rpain	G	A	11: 70,865,867 (GRCm39)		probably null	Het
Sdk1	C	T	5: 142,147,630 (GRCm39)	T1754I	probably damaging	Het
Stag1	T	A	9: 100,678,880 (GRCm39)	L267Q	probably damaging	Het
Tex9	T	C	9: 72,391,374 (GRCm39)	T92A	probably benign	Het
Trpa1	T	A	1: 14,968,387 (GRCm39)	I460F	possibly damaging	Het
Ttn	A	T	2: 76,780,500 (GRCm39)	Y1084N	probably damaging	Het
Utp6	A	G	11: 79,832,694 (GRCm39)		probably benign	Het
Zbtb39	C	G	10: 127,578,175 (GRCm39)	Q250E	probably benign	Het

Other mutations in Ms4a6c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00330:Ms4a6c	APN	19	11,455,676 (GRCm39)	missense	probably benign	0.08
IGL02053:Ms4a6c	APN	19	11,455,586 (GRCm39)	missense	probably benign	0.31
IGL02651:Ms4a6c	APN	19	11,455,669 (GRCm39)	missense	possibly damaging	0.46
IGL02941:Ms4a6c	APN	19	11,448,466 (GRCm39)	utr 5 prime	probably benign
R5434:Ms4a6c	UTSW	19	11,448,588 (GRCm39)	missense	probably benign	0.01
R5592:Ms4a6c	UTSW	19	11,458,496 (GRCm39)	intron	probably benign
R5592:Ms4a6c	UTSW	19	11,457,641 (GRCm39)	intron	probably benign
R5594:Ms4a6c	UTSW	19	11,455,537 (GRCm39)	missense	probably benign	0.38
R5945:Ms4a6c	UTSW	19	11,457,863 (GRCm39)	intron	probably benign
R6214:Ms4a6c	UTSW	19	11,448,500 (GRCm39)	missense	possibly damaging	0.86
R7349:Ms4a6c	UTSW	19	11,455,555 (GRCm39)	missense	probably damaging	1.00
R7484:Ms4a6c	UTSW	19	11,449,893 (GRCm39)	critical splice donor site	probably null
R8293:Ms4a6c	UTSW	19	11,455,660 (GRCm39)	missense	probably benign
R9442:Ms4a6c	UTSW	19	11,449,851 (GRCm39)	missense	probably benign	0.31

Predicted Primers

PCR Primer
(F):5'- TCTTCCGAAGAACAAGTCAAGGATGC -3'
(R):5'- TCTGTTCCTAACACATAGAGCCTCACC -3'

Sequencing Primer
(F):5'- TCCAACTTttcttcttcttcttcttc -3'
(R):5'- ATAGAGCCTCACCCTCTGC -3'

Posted On

2013-11-07