Incidental Mutation 'R0943:Rnf26rt'
ID 81961
Institutional Source Beutler Lab
Gene Symbol Rnf26rt
Ensembl Gene ENSMUSG00000072476
Gene Name ring finger protein 26, retrotransposed
Synonyms Gm9008
MMRRC Submission 039082-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.183) question?
Stock # R0943 (G1)
Quality Score 225
Status Validated
Chromosome 6
Chromosomal Location 76472428-76474716 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 76473398 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Histidine to Arginine at position 406 (H406R)
Ref Sequence ENSEMBL: ENSMUSP00000126976 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000097218]
AlphaFold E9PVG0
Predicted Effect probably benign
Transcript: ENSMUST00000097218
AA Change: H406R

PolyPhen 2 Score 0.092 (Sensitivity: 0.93; Specificity: 0.85)
SMART Domains Protein: ENSMUSP00000126976
Gene: ENSMUSG00000072476
AA Change: H406R

DomainStartEndE-ValueType
transmembrane domain 20 42 N/A INTRINSIC
transmembrane domain 55 77 N/A INTRINSIC
transmembrane domain 148 170 N/A INTRINSIC
transmembrane domain 183 205 N/A INTRINSIC
low complexity region 208 221 N/A INTRINSIC
transmembrane domain 225 247 N/A INTRINSIC
low complexity region 301 316 N/A INTRINSIC
RING 371 412 8.29e-2 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000204070
Meta Mutation Damage Score 0.1335 question?
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 98.8%
  • 10x: 97.3%
  • 20x: 94.5%
Validation Efficiency 97% (36/37)
Allele List at MGI
Other mutations in this stock
Total: 37 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Agtpbp1 T C 13: 59,648,416 (GRCm39) N468S probably benign Het
Card6 A G 15: 5,129,768 (GRCm39) S543P probably damaging Het
Celsr1 T G 15: 85,787,489 (GRCm39) T2750P probably damaging Het
Csmd3 A G 15: 47,539,135 (GRCm39) M2341T probably damaging Het
Dym A G 18: 75,419,840 (GRCm39) *670W probably null Het
Ehbp1 T C 11: 22,045,883 (GRCm39) D597G probably benign Het
Emx1 G A 6: 85,180,901 (GRCm39) W206* probably null Het
Esr1 A G 10: 4,696,781 (GRCm39) K210R probably damaging Het
Extl1 TGCGTTGCACCGATACCGGG TG 4: 134,084,988 (GRCm39) probably benign Het
Fads2b C T 2: 85,319,109 (GRCm39) D398N probably damaging Het
Fam72a T C 1: 131,456,517 (GRCm39) S27P possibly damaging Het
Fanca A T 8: 124,000,925 (GRCm39) C1152S probably damaging Het
Fras1 G A 5: 96,874,402 (GRCm39) V2276I probably benign Het
Hoxb13 A G 11: 96,086,799 (GRCm39) E202G probably benign Het
Lcmt1 T G 7: 123,000,662 (GRCm39) probably null Het
Nars2 C T 7: 96,605,138 (GRCm39) probably benign Het
Neil3 ATATTTATTTATTTATTTATTTATTTATTTATT ATATTTATTTATTTATTTATTTATTTATTTATTTATT 8: 54,062,404 (GRCm39) probably benign Het
Nup153 T C 13: 46,850,248 (GRCm39) probably benign Het
Or4c10b T C 2: 89,711,305 (GRCm39) V45A probably benign Het
Or5b112 C A 19: 13,319,157 (GRCm39) H12N probably benign Het
Prkar2a T C 9: 108,610,475 (GRCm39) probably benign Het
Ptprc T C 1: 138,038,902 (GRCm39) T209A probably damaging Het
Rif1 GCCACCA GCCA 2: 52,000,336 (GRCm39) probably benign Het
Rprd2 C T 3: 95,691,559 (GRCm39) V239I possibly damaging Het
Sgo2b A G 8: 64,384,369 (GRCm39) F209S possibly damaging Het
Shfl A T 9: 20,784,258 (GRCm39) H160L possibly damaging Het
Spry2 T C 14: 106,131,021 (GRCm39) Y55C probably damaging Het
Tbc1d32 A T 10: 56,037,243 (GRCm39) V667E probably benign Het
Tbrg4 A G 11: 6,569,008 (GRCm39) F388L probably damaging Het
Tmt1a T C 15: 100,202,839 (GRCm39) Y20H probably benign Het
Tshz1 T C 18: 84,033,356 (GRCm39) T351A probably benign Het
Usp48 A G 4: 137,371,781 (GRCm39) N969S possibly damaging Het
Vmn2r108 A T 17: 20,691,397 (GRCm39) C375* probably null Het
Vps45 T A 3: 95,964,336 (GRCm39) I62F probably benign Het
Xab2 A G 8: 3,663,667 (GRCm39) F388L probably benign Het
Zfp735 A G 11: 73,602,909 (GRCm39) T618A probably benign Het
Zswim2 T A 2: 83,748,342 (GRCm39) R279S possibly damaging Het
Other mutations in Rnf26rt
AlleleSourceChrCoordTypePredicted EffectPPH Score
R0322:Rnf26rt UTSW 6 76,473,401 (GRCm39) missense probably benign 0.14
R1767:Rnf26rt UTSW 6 76,474,588 (GRCm39) missense unknown
R1807:Rnf26rt UTSW 6 76,474,397 (GRCm39) missense probably benign 0.09
R3773:Rnf26rt UTSW 6 76,473,942 (GRCm39) missense probably benign 0.00
R4515:Rnf26rt UTSW 6 76,473,792 (GRCm39) missense probably benign 0.00
R6408:Rnf26rt UTSW 6 76,473,441 (GRCm39) missense probably damaging 1.00
R7686:Rnf26rt UTSW 6 76,474,013 (GRCm39) missense probably damaging 1.00
R8162:Rnf26rt UTSW 6 76,473,558 (GRCm39) missense probably benign 0.04
R9192:Rnf26rt UTSW 6 76,473,566 (GRCm39) missense probably benign 0.00
R9467:Rnf26rt UTSW 6 76,473,615 (GRCm39) missense probably benign 0.04
R9607:Rnf26rt UTSW 6 76,473,923 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- GCCCTTGCATAGTGACATACTCACC -3'
(R):5'- AGGACACTCCTCCTGAAGCAGAAG -3'

Sequencing Primer
(F):5'- ACACGTCCTGGATATATGGC -3'
(R):5'- GAGGTCATCAGAGCTGCAC -3'
Posted On 2013-11-08