Mutagenetix > Incidental Mutation

Incidental Mutation 'R0863:Ms4a10'

82232

Institutional Source

Beutler Lab

Gene Symbol

Ms4a10

Ensembl Gene

ENSMUSG00000024731

Gene Name

membrane-spanning 4-domains, subfamily A, member 10

Synonyms

2010001N17Rik

MMRRC Submission

039037-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.090) question?

Stock #

R0863 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

10939657-10952034 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 10945957 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Aspartic acid at position 58 (G58D)

Ref Sequence

ENSEMBL: ENSMUSP00000140111 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000072748] [ENSMUST00000190246] [ENSMUST00000191343]

AlphaFold

Q99N03

Predicted Effect

probably damaging
Transcript: ENSMUST00000072748
AA Change: G58D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000072531
Gene: ENSMUSG00000024731
AA Change: G58D

Domain	Start	End	E-Value	Type
low complexity region	25	36	N/A	INTRINSIC
Pfam:CD20	56	190	6e-10	PFAM
low complexity region	239	252	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000190246

SMART Domains

Protein: ENSMUSP00000140826
Gene: ENSMUSG00000024731

Domain	Start	End	E-Value	Type
signal peptide	1	17	N/A	INTRINSIC
low complexity region	39	53	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000191343
AA Change: G58D

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000140111
Gene: ENSMUSG00000024731
AA Change: G58D

Domain	Start	End	E-Value	Type
low complexity region	25	36	N/A	INTRINSIC
Pfam:CD20	57	150	7.9e-14	PFAM
low complexity region	199	212	N/A	INTRINSIC

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 99.5%
3x: 98.9%
10x: 97.4%
20x: 94.8%

Validation Efficiency

94% (59/63)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Most MS4A genes, including MS4A10, encode proteins with at least 4 potential transmembrane domains and N- and C-terminal cytoplasmic domains encoded by distinct exons.[supplied by OMIM, Apr 2004]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310016G11Rik	A	G	7: 44,327,232 (GRCm39)		noncoding transcript	Het
4930433I11Rik	A	T	7: 40,642,480 (GRCm39)	T141S	probably benign	Het
Abca14	A	T	7: 119,815,453 (GRCm39)	T234S	probably benign	Het
Acap1	C	A	11: 69,777,882 (GRCm39)	V119L	probably damaging	Het
Actr2	C	T	11: 20,030,760 (GRCm39)	V163I	probably benign	Het
Adcy4	T	C	14: 56,021,056 (GRCm39)	Y27C	probably damaging	Het
Arnt2	T	A	7: 83,914,792 (GRCm39)	K524M	probably damaging	Het
Brca1	T	C	11: 101,415,596 (GRCm39)	Y846C	probably benign	Het
Capn7	T	A	14: 31,091,714 (GRCm39)	C704S	possibly damaging	Het
Cep350	T	A	1: 155,737,981 (GRCm39)	I2621L	probably benign	Het
Col11a1	G	A	3: 113,932,414 (GRCm39)	R113H	unknown	Het
Ctnnbl1	C	T	2: 157,641,337 (GRCm39)		probably benign	Het
Cul9	T	C	17: 46,848,748 (GRCm39)		probably null	Het
Erc2	A	C	14: 27,747,105 (GRCm39)	N345T	probably benign	Het
Fank1	A	G	7: 133,482,352 (GRCm39)	R73G	possibly damaging	Het
Fes	A	T	7: 80,030,634 (GRCm39)	W552R	probably damaging	Het
Fsd2	A	G	7: 81,191,913 (GRCm39)	V488A	possibly damaging	Het
Gfm1	T	C	3: 67,381,928 (GRCm39)	S705P	probably damaging	Het
Gm9493	A	T	19: 23,597,173 (GRCm39)	Q23L	probably benign	Het
Gucy1b2	T	C	14: 62,656,511 (GRCm39)	D282G	probably benign	Het
H2-Ab1	T	C	17: 34,486,328 (GRCm39)	I129T	probably damaging	Het
H2-M10.3	T	A	17: 36,677,582 (GRCm39)	Y232F	probably damaging	Het
Iqca1	C	A	1: 90,070,453 (GRCm39)	G133V	probably null	Het
Lonp1	T	C	17: 56,925,331 (GRCm39)	K487R	probably damaging	Het
Ltbp1	A	G	17: 75,559,381 (GRCm39)	Y290C	probably damaging	Het
Muc5b	A	G	7: 141,421,454 (GRCm39)	S4315G	probably benign	Het
Nlrp1b	T	A	11: 71,072,173 (GRCm39)	T557S	probably benign	Het
Nlrp3	A	G	11: 59,456,676 (GRCm39)	D946G	probably benign	Het
Obscn	T	C	11: 58,886,241 (GRCm39)		probably benign	Het
Oga	C	T	19: 45,771,425 (GRCm39)	A49T	probably benign	Het
Or10ab5	A	G	7: 108,244,865 (GRCm39)	I306T	probably benign	Het
Or5p50	T	C	7: 107,422,581 (GRCm39)	S32G	probably benign	Het
Or7e173	A	T	9: 19,938,509 (GRCm39)	S242T	probably damaging	Het
Pask	A	T	1: 93,242,061 (GRCm39)	F1219I	probably damaging	Het
Pcdhb2	G	A	18: 37,428,710 (GRCm39)	V228I	possibly damaging	Het
Phf1	T	C	17: 27,156,114 (GRCm39)		probably benign	Het
Plec	G	A	15: 76,058,280 (GRCm39)	Q3751*	probably null	Het
Plscr1l1	A	T	9: 92,233,140 (GRCm39)	I88L	possibly damaging	Het
Ppp1r12c	G	T	7: 4,489,365 (GRCm39)	Q240K	probably damaging	Het
Ralgapa1	A	T	12: 55,809,466 (GRCm39)	Y436*	probably null	Het
Ralgapa1	C	A	12: 55,829,562 (GRCm39)		probably benign	Het
Scel	T	A	14: 103,823,916 (GRCm39)	S381R	possibly damaging	Het
Sema4a	C	T	3: 88,355,456 (GRCm39)		probably benign	Het
Sltm	A	G	9: 70,469,190 (GRCm39)	T150A	probably benign	Het
Spag1	G	T	15: 36,192,193 (GRCm39)	K217N	probably damaging	Het
Ssh1	C	T	5: 114,104,792 (GRCm39)	R9H	probably damaging	Het
St3gal4	C	A	9: 34,964,744 (GRCm39)	V155F	probably damaging	Het
Stxbp5	C	T	10: 9,684,784 (GRCm39)	E539K	possibly damaging	Het
Tbc1d7	G	T	13: 43,308,161 (GRCm39)		probably benign	Het
Thnsl2	A	T	6: 71,111,208 (GRCm39)	L220*	probably null	Het
Tinf2	G	A	14: 55,917,566 (GRCm39)	P308S	probably benign	Het
Tnf	T	C	17: 35,420,120 (GRCm39)		probably benign	Het
Ttc21b	T	C	2: 66,073,117 (GRCm39)	I190V	probably benign	Het
Ttn	T	C	2: 76,537,391 (GRCm39)	T34846A	probably benign	Het
Ube4a	A	G	9: 44,861,114 (GRCm39)	V232A	possibly damaging	Het
Uri1	A	T	7: 37,669,100 (GRCm39)	D122E	probably damaging	Het
Vmn2r94	T	G	17: 18,477,973 (GRCm39)	Q146P	probably damaging	Het
Zan	T	A	5: 137,456,901 (GRCm39)	E1278D	unknown	Het
Zfhx4	T	A	3: 5,310,375 (GRCm39)	S919R	possibly damaging	Het

Other mutations in Ms4a10

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01901:Ms4a10	APN	19	10,940,374 (GRCm39)	missense	probably benign
IGL03031:Ms4a10	APN	19	10,946,035 (GRCm39)	missense	probably benign	0.01
P0027:Ms4a10	UTSW	19	10,941,492 (GRCm39)	missense	probably damaging	0.99
R1456:Ms4a10	UTSW	19	10,942,097 (GRCm39)	missense	possibly damaging	0.91
R1509:Ms4a10	UTSW	19	10,941,472 (GRCm39)	missense	probably benign	0.01
R1838:Ms4a10	UTSW	19	10,941,411 (GRCm39)	missense	possibly damaging	0.92
R4583:Ms4a10	UTSW	19	10,945,553 (GRCm39)	missense	possibly damaging	0.94
R4932:Ms4a10	UTSW	19	10,942,132 (GRCm39)	missense	probably damaging	1.00
R5548:Ms4a10	UTSW	19	10,945,484 (GRCm39)	critical splice donor site	probably null
R5819:Ms4a10	UTSW	19	10,946,054 (GRCm39)	missense	probably benign	0.00
R5952:Ms4a10	UTSW	19	10,941,486 (GRCm39)	missense	probably damaging	1.00
R7026:Ms4a10	UTSW	19	10,944,869 (GRCm39)	splice site	probably null
R8063:Ms4a10	UTSW	19	10,942,136 (GRCm39)	missense	probably benign	0.01
R8323:Ms4a10	UTSW	19	10,940,363 (GRCm39)	nonsense	probably null
R9616:Ms4a10	UTSW	19	10,944,440 (GRCm39)	missense	possibly damaging	0.47
R9631:Ms4a10	UTSW	19	10,944,451 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- ATGACTAGCAGTGCCTGGACCTAC -3'
(R):5'- TCTGATCCTTGGACACAAGCTCAAC -3'

Sequencing Primer
(F):5'- GGATGTCAAAACCCCACTTGG -3'
(R):5'- TTGGACACAAGCTCAACTTTAAC -3'

Posted On

2013-11-08