Mutagenetix > Incidental Mutation

Incidental Mutation 'R0919:Tbc1d12'

82803

Institutional Source

Beutler Lab

Gene Symbol

Tbc1d12

Ensembl Gene

ENSMUSG00000048720

Gene Name

TBC1D12: TBC1 domain family, member 12

Synonyms

MMRRC Submission

039069-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.537) question?

Stock #

R0919 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

38825035-38908103 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 38902493 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Tyrosine at position 551 (H551Y)

Ref Sequence

ENSEMBL: ENSMUSP00000037884 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000037302]

AlphaFold

no structure available at present

Predicted Effect

possibly damaging
Transcript: ENSMUST00000037302
AA Change: H551Y

PolyPhen 2 Score 0.486 (Sensitivity: 0.88; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000037884
Gene: ENSMUSG00000048720
AA Change: H551Y

Domain	Start	End	E-Value	Type
low complexity region	39	58	N/A	INTRINSIC
low complexity region	67	95	N/A	INTRINSIC
low complexity region	110	123	N/A	INTRINSIC
low complexity region	161	177	N/A	INTRINSIC
low complexity region	211	224	N/A	INTRINSIC
low complexity region	227	242	N/A	INTRINSIC
Blast:TBC	321	371	7e-14	BLAST
TBC	404	638	1.05e-54	SMART

Meta Mutation Damage Score

0.1328

Coding Region Coverage

1x: 99.4%
3x: 98.8%
10x: 97.5%
20x: 95.6%

Validation Efficiency

96% (43/45)

Allele List at MGI

Other mutations in this stock

Total: 42 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Alpk2	C	A	18: 65,440,544 (GRCm39)	C283F	probably benign	Het
Anapc1	T	C	2: 128,459,651 (GRCm39)	R1803G	probably benign	Het
Anapc4	T	C	5: 53,012,979 (GRCm39)	V423A	probably benign	Het
Arfgef3	A	G	10: 18,465,483 (GRCm39)	I2120T	possibly damaging	Het
Btaf1	T	A	19: 36,968,143 (GRCm39)	H1109Q	probably benign	Het
Cfap418	A	G	4: 10,882,462 (GRCm39)	T124A	probably benign	Het
Cfap70	G	A	14: 20,454,232 (GRCm39)	P851S	probably benign	Het
Clcf1	T	A	19: 4,272,252 (GRCm39)	L103Q	probably damaging	Het
Col11a2	T	A	17: 34,278,124 (GRCm39)	V1032E	possibly damaging	Het
Cyp2c38	T	G	19: 39,393,113 (GRCm39)	D318A	probably benign	Het
Dbpht2	A	G	12: 74,345,774 (GRCm39)		noncoding transcript	Het
Dhx34	A	C	7: 15,935,883 (GRCm39)	V893G	probably damaging	Het
Fsip2	T	A	2: 82,815,828 (GRCm39)	C3854S	possibly damaging	Het
Htr1a	T	C	13: 105,581,344 (GRCm39)	Y195H	probably damaging	Het
Insr	A	G	8: 3,208,769 (GRCm39)	S1231P	probably damaging	Het
Itga10	C	T	3: 96,559,054 (GRCm39)		probably benign	Het
Kpna4	A	T	3: 68,993,161 (GRCm39)		probably benign	Het
Or52d13	A	G	7: 103,110,019 (GRCm39)	I132T	probably damaging	Het
Or52e8	A	T	7: 104,624,519 (GRCm39)	Y228*	probably null	Het
Or5m3	A	G	2: 85,838,984 (GRCm39)	Y288C	possibly damaging	Het
Osbpl7	G	A	11: 96,946,927 (GRCm39)	R239H	possibly damaging	Het
Prkce	G	A	17: 86,937,588 (GRCm39)	V674I	probably benign	Het
Prkrip1	T	C	5: 136,226,685 (GRCm39)	M52V	possibly damaging	Het
Sash1	A	G	10: 8,605,843 (GRCm39)	M849T	probably benign	Het
Scaf8	T	C	17: 3,247,395 (GRCm39)	L906S	probably damaging	Het
Sfmbt2	T	C	2: 10,582,382 (GRCm39)	L676P	probably benign	Het
Sgsm1	C	T	5: 113,406,708 (GRCm39)	V923I	probably damaging	Het
Slc38a3	A	T	9: 107,533,158 (GRCm39)	L305Q	probably damaging	Het
Slc44a5	A	G	3: 153,949,223 (GRCm39)	Y232C	probably damaging	Het
Spag17	A	T	3: 99,979,259 (GRCm39)		probably benign	Het
Synm	T	C	7: 67,385,095 (GRCm39)	I414V	probably damaging	Het
Timm21	G	C	18: 84,967,387 (GRCm39)	L130V	probably damaging	Het
Trpc7	C	T	13: 56,970,462 (GRCm39)		probably benign	Het
Trpm7	G	A	2: 126,673,158 (GRCm39)	R532C	probably damaging	Het
Ttn	T	A	2: 76,777,086 (GRCm39)	K1485*	probably null	Het
Txn2	T	C	15: 77,811,949 (GRCm39)	D69G	probably damaging	Het
U2af2	C	T	7: 5,072,433 (GRCm39)		probably benign	Het
Ubn1	T	C	16: 4,882,255 (GRCm39)	Y239H	probably damaging	Het
Ubtf	A	G	11: 102,200,603 (GRCm39)		probably benign	Het
Usp49	T	A	17: 47,983,376 (GRCm39)	V127D	probably benign	Het
Washc2	C	T	6: 116,185,225 (GRCm39)	R20W	probably damaging	Het
Zscan10	T	C	17: 23,828,981 (GRCm39)	S476P	probably damaging	Het

Other mutations in Tbc1d12

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00594:Tbc1d12	APN	19	38,884,487 (GRCm39)	missense	possibly damaging	0.83
IGL01583:Tbc1d12	APN	19	38,871,176 (GRCm39)	missense	probably benign	0.12
IGL01667:Tbc1d12	APN	19	38,902,744 (GRCm39)	splice site	probably benign
IGL02207:Tbc1d12	APN	19	38,905,091 (GRCm39)	missense	probably damaging	1.00
IGL03348:Tbc1d12	APN	19	38,905,064 (GRCm39)	missense	probably damaging	1.00
R0844:Tbc1d12	UTSW	19	38,825,515 (GRCm39)	missense	probably benign	0.02
R1440:Tbc1d12	UTSW	19	38,902,796 (GRCm39)	missense	possibly damaging	0.53
R1845:Tbc1d12	UTSW	19	38,899,529 (GRCm39)	missense	probably damaging	0.99
R2374:Tbc1d12	UTSW	19	38,825,614 (GRCm39)	missense	possibly damaging	0.87
R3499:Tbc1d12	UTSW	19	38,884,478 (GRCm39)	missense	possibly damaging	0.92
R4704:Tbc1d12	UTSW	19	38,889,781 (GRCm39)	missense	probably damaging	1.00
R4965:Tbc1d12	UTSW	19	38,854,169 (GRCm39)	nonsense	probably null
R5089:Tbc1d12	UTSW	19	38,905,232 (GRCm39)	nonsense	probably null
R5781:Tbc1d12	UTSW	19	38,871,127 (GRCm39)	missense	probably benign	0.00
R7237:Tbc1d12	UTSW	19	38,887,346 (GRCm39)	missense	probably benign	0.10
R7978:Tbc1d12	UTSW	19	38,905,285 (GRCm39)	missense	probably benign	0.01
R8283:Tbc1d12	UTSW	19	38,825,353 (GRCm39)	missense	probably benign	0.43
R8304:Tbc1d12	UTSW	19	38,825,824 (GRCm39)	missense	possibly damaging	0.52
R8376:Tbc1d12	UTSW	19	38,889,853 (GRCm39)	missense	probably damaging	1.00
R8931:Tbc1d12	UTSW	19	38,854,098 (GRCm39)	missense	probably benign
R8944:Tbc1d12	UTSW	19	38,899,510 (GRCm39)	missense	probably damaging	0.98
R9206:Tbc1d12	UTSW	19	38,825,442 (GRCm39)	missense	probably benign	0.08
R9252:Tbc1d12	UTSW	19	38,899,477 (GRCm39)	missense	probably benign	0.42
R9258:Tbc1d12	UTSW	19	38,889,823 (GRCm39)	missense	possibly damaging	0.95
R9430:Tbc1d12	UTSW	19	38,884,490 (GRCm39)	missense	probably damaging	1.00
R9434:Tbc1d12	UTSW	19	38,902,461 (GRCm39)	missense	probably benign	0.05
RF010:Tbc1d12	UTSW	19	38,825,384 (GRCm39)	small deletion	probably benign
RF011:Tbc1d12	UTSW	19	38,825,401 (GRCm39)	small deletion	probably benign
RF039:Tbc1d12	UTSW	19	38,825,401 (GRCm39)	small deletion	probably benign

Predicted Primers

PCR Primer
(F):5'- GGTACACTGAGATAGGCTCTTAGACCAA -3'
(R):5'- ccaagcctggctTCAGTCTACG -3'

Sequencing Primer
(F):5'- GGCTCTTAGACCAAATAAAAGCTG -3'
(R):5'- TTCATTCGTAAGGAAAAGTGCC -3'

Posted On

2013-11-08