Incidental Mutation 'IGL00654:Rubcn'
ID |
8421 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Rubcn
|
Ensembl Gene |
ENSMUSG00000035629 |
Gene Name |
RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein |
Synonyms |
1700021K19Rik |
Accession Numbers |
|
Essential gene? |
Probably essential
(E-score: 0.905)
|
Stock # |
IGL00654
|
Quality Score |
|
Status
|
|
Chromosome |
16 |
Chromosomal Location |
32642072-32698121 bp(-) (GRCm39) |
Type of Mutation |
critical splice donor site (2 bp from exon) |
DNA Base Change (assembly) |
A to T
at 32644747 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
|
Ref Sequence |
ENSEMBL: ENSMUSP00000155943
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000040986]
[ENSMUST00000040986]
[ENSMUST00000089684]
[ENSMUST00000115105]
[ENSMUST00000119810]
[ENSMUST00000232269]
[ENSMUST00000231478]
|
AlphaFold |
Q80U62 |
Predicted Effect |
probably null
Transcript: ENSMUST00000040986
|
SMART Domains |
Protein: ENSMUSP00000048811 Gene: ENSMUSG00000035629
Domain | Start | End | E-Value | Type |
low complexity region
|
4 |
20 |
N/A |
INTRINSIC |
RUN
|
123 |
183 |
1.67e-15 |
SMART |
low complexity region
|
230 |
254 |
N/A |
INTRINSIC |
low complexity region
|
339 |
371 |
N/A |
INTRINSIC |
Blast:DUF4206
|
469 |
687 |
1e-66 |
BLAST |
DUF4206
|
706 |
908 |
1.66e-113 |
SMART |
low complexity region
|
915 |
941 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000040986
|
SMART Domains |
Protein: ENSMUSP00000048811 Gene: ENSMUSG00000035629
Domain | Start | End | E-Value | Type |
low complexity region
|
4 |
20 |
N/A |
INTRINSIC |
RUN
|
123 |
183 |
1.67e-15 |
SMART |
low complexity region
|
230 |
254 |
N/A |
INTRINSIC |
low complexity region
|
339 |
371 |
N/A |
INTRINSIC |
Blast:DUF4206
|
469 |
687 |
1e-66 |
BLAST |
DUF4206
|
706 |
908 |
1.66e-113 |
SMART |
low complexity region
|
915 |
941 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000089684
|
SMART Domains |
Protein: ENSMUSP00000087114 Gene: ENSMUSG00000035629
Domain | Start | End | E-Value | Type |
low complexity region
|
4 |
20 |
N/A |
INTRINSIC |
RUN
|
123 |
183 |
1.67e-15 |
SMART |
low complexity region
|
230 |
254 |
N/A |
INTRINSIC |
low complexity region
|
339 |
371 |
N/A |
INTRINSIC |
Blast:DUF4206
|
484 |
702 |
1e-66 |
BLAST |
DUF4206
|
721 |
923 |
1.66e-113 |
SMART |
low complexity region
|
930 |
956 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000115105
|
SMART Domains |
Protein: ENSMUSP00000110757 Gene: ENSMUSG00000035629
Domain | Start | End | E-Value | Type |
low complexity region
|
4 |
20 |
N/A |
INTRINSIC |
RUN
|
123 |
183 |
1.67e-15 |
SMART |
low complexity region
|
230 |
254 |
N/A |
INTRINSIC |
low complexity region
|
340 |
357 |
N/A |
INTRINSIC |
Blast:DUF4206
|
455 |
673 |
1e-66 |
BLAST |
DUF4206
|
692 |
894 |
1.66e-113 |
SMART |
low complexity region
|
901 |
927 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
Transcript: ENSMUST00000119810
|
SMART Domains |
Protein: ENSMUSP00000113087 Gene: ENSMUSG00000035629
Domain | Start | End | E-Value | Type |
RUN
|
62 |
122 |
1.67e-15 |
SMART |
low complexity region
|
169 |
193 |
N/A |
INTRINSIC |
low complexity region
|
278 |
310 |
N/A |
INTRINSIC |
Blast:DUF4206
|
408 |
626 |
6e-67 |
BLAST |
DUF4206
|
645 |
847 |
1.66e-113 |
SMART |
low complexity region
|
854 |
880 |
N/A |
INTRINSIC |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000135480
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000140229
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000152920
|
Predicted Effect |
probably null
Transcript: ENSMUST00000232269
|
Predicted Effect |
probably null
Transcript: ENSMUST00000231478
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a negative regulator of autophagy and endocytic trafficking and controls endosome maturation. This protein contains two conserved domains, an N-terminal RUN domain and a C-terminal DUF4206 domain. The RUN domain is involved in Ras-like GTPase signaling, and the DUF4206 domain contains a diacylglycerol (DAG) binding-like motif. Mutation in this gene results in deletion of the DAG binding-like motif and causes a recessive ataxia. Alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Apr 2014]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 21 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adam28 |
T |
C |
14: 68,886,877 (GRCm39) |
T46A |
probably benign |
Het |
Cmya5 |
G |
A |
13: 93,230,669 (GRCm39) |
S1473L |
probably benign |
Het |
Crygd |
C |
T |
1: 65,101,250 (GRCm39) |
R115Q |
probably benign |
Het |
Dcbld1 |
A |
C |
10: 52,188,945 (GRCm39) |
I186L |
probably benign |
Het |
Dgkh |
A |
C |
14: 78,847,033 (GRCm39) |
M367R |
possibly damaging |
Het |
Myb |
T |
C |
10: 21,017,725 (GRCm39) |
D622G |
probably damaging |
Het |
Nbeal1 |
A |
G |
1: 60,234,170 (GRCm39) |
|
probably benign |
Het |
Nlrp14 |
G |
T |
7: 106,795,351 (GRCm39) |
L211F |
probably damaging |
Het |
Pbrm1 |
T |
A |
14: 30,754,361 (GRCm39) |
|
probably benign |
Het |
Pcdhb13 |
A |
T |
18: 37,576,774 (GRCm39) |
D384V |
possibly damaging |
Het |
Ppl |
T |
C |
16: 4,905,172 (GRCm39) |
I1708V |
possibly damaging |
Het |
Prdx1 |
G |
A |
4: 116,550,162 (GRCm39) |
D115N |
probably benign |
Het |
Prdx1 |
C |
T |
4: 116,550,147 (GRCm39) |
R110C |
probably benign |
Het |
Prep |
C |
T |
10: 44,991,269 (GRCm39) |
R312W |
probably damaging |
Het |
Rpap2 |
A |
T |
5: 107,751,497 (GRCm39) |
|
probably benign |
Het |
Sumf2 |
G |
T |
5: 129,882,918 (GRCm39) |
|
probably benign |
Het |
Tek |
A |
G |
4: 94,715,538 (GRCm39) |
T359A |
probably benign |
Het |
Thrap3 |
C |
T |
4: 126,059,371 (GRCm39) |
G892S |
probably benign |
Het |
Tlr12 |
C |
T |
4: 128,511,233 (GRCm39) |
G339E |
probably benign |
Het |
Usp39 |
A |
G |
6: 72,305,607 (GRCm39) |
L392P |
probably damaging |
Het |
Wbp2nl |
T |
C |
15: 82,198,411 (GRCm39) |
V316A |
probably benign |
Het |
|
Other mutations in Rubcn |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00777:Rubcn
|
APN |
16 |
32,656,933 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL01402:Rubcn
|
APN |
16 |
32,647,666 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01404:Rubcn
|
APN |
16 |
32,647,666 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02255:Rubcn
|
APN |
16 |
32,647,715 (GRCm39) |
missense |
probably benign |
0.04 |
IGL03019:Rubcn
|
APN |
16 |
32,647,077 (GRCm39) |
missense |
probably damaging |
0.98 |
IGL03388:Rubcn
|
APN |
16 |
32,661,938 (GRCm39) |
missense |
probably benign |
0.02 |
R0254:Rubcn
|
UTSW |
16 |
32,668,316 (GRCm39) |
missense |
probably benign |
0.00 |
R0373:Rubcn
|
UTSW |
16 |
32,656,350 (GRCm39) |
missense |
probably damaging |
1.00 |
R0636:Rubcn
|
UTSW |
16 |
32,649,056 (GRCm39) |
missense |
probably damaging |
1.00 |
R0839:Rubcn
|
UTSW |
16 |
32,647,713 (GRCm39) |
missense |
probably damaging |
0.98 |
R0967:Rubcn
|
UTSW |
16 |
32,646,087 (GRCm39) |
missense |
probably benign |
0.00 |
R1711:Rubcn
|
UTSW |
16 |
32,663,471 (GRCm39) |
missense |
probably damaging |
1.00 |
R1819:Rubcn
|
UTSW |
16 |
32,647,284 (GRCm39) |
missense |
possibly damaging |
0.93 |
R1840:Rubcn
|
UTSW |
16 |
32,646,542 (GRCm39) |
missense |
possibly damaging |
0.83 |
R2511:Rubcn
|
UTSW |
16 |
32,667,624 (GRCm39) |
missense |
probably damaging |
1.00 |
R3932:Rubcn
|
UTSW |
16 |
32,649,629 (GRCm39) |
splice site |
probably null |
|
R3933:Rubcn
|
UTSW |
16 |
32,649,629 (GRCm39) |
splice site |
probably null |
|
R4384:Rubcn
|
UTSW |
16 |
32,677,272 (GRCm39) |
missense |
probably damaging |
0.96 |
R4788:Rubcn
|
UTSW |
16 |
32,656,778 (GRCm39) |
critical splice donor site |
probably null |
|
R4852:Rubcn
|
UTSW |
16 |
32,663,678 (GRCm39) |
missense |
probably damaging |
1.00 |
R4921:Rubcn
|
UTSW |
16 |
32,667,664 (GRCm39) |
missense |
probably damaging |
1.00 |
R4950:Rubcn
|
UTSW |
16 |
32,663,563 (GRCm39) |
missense |
probably damaging |
1.00 |
R5234:Rubcn
|
UTSW |
16 |
32,656,828 (GRCm39) |
missense |
probably damaging |
1.00 |
R5527:Rubcn
|
UTSW |
16 |
32,647,081 (GRCm39) |
missense |
probably damaging |
1.00 |
R5616:Rubcn
|
UTSW |
16 |
32,647,293 (GRCm39) |
missense |
possibly damaging |
0.76 |
R5823:Rubcn
|
UTSW |
16 |
32,670,091 (GRCm39) |
missense |
probably damaging |
0.98 |
R6970:Rubcn
|
UTSW |
16 |
32,688,514 (GRCm39) |
intron |
probably benign |
|
R7120:Rubcn
|
UTSW |
16 |
32,656,839 (GRCm39) |
missense |
probably damaging |
1.00 |
R7121:Rubcn
|
UTSW |
16 |
32,656,839 (GRCm39) |
missense |
probably damaging |
1.00 |
R7221:Rubcn
|
UTSW |
16 |
32,687,293 (GRCm39) |
splice site |
probably null |
|
R7833:Rubcn
|
UTSW |
16 |
32,688,644 (GRCm39) |
start gained |
probably benign |
|
R8108:Rubcn
|
UTSW |
16 |
32,677,320 (GRCm39) |
missense |
probably damaging |
1.00 |
R8211:Rubcn
|
UTSW |
16 |
32,656,913 (GRCm39) |
missense |
possibly damaging |
0.87 |
R8923:Rubcn
|
UTSW |
16 |
32,646,049 (GRCm39) |
missense |
probably damaging |
1.00 |
R9046:Rubcn
|
UTSW |
16 |
32,661,940 (GRCm39) |
missense |
probably benign |
0.00 |
R9587:Rubcn
|
UTSW |
16 |
32,663,679 (GRCm39) |
missense |
probably damaging |
1.00 |
R9694:Rubcn
|
UTSW |
16 |
32,663,481 (GRCm39) |
missense |
probably benign |
0.22 |
X0065:Rubcn
|
UTSW |
16 |
32,668,355 (GRCm39) |
missense |
possibly damaging |
0.85 |
Z1176:Rubcn
|
UTSW |
16 |
32,663,533 (GRCm39) |
missense |
probably benign |
0.00 |
Z1177:Rubcn
|
UTSW |
16 |
32,645,959 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2012-12-06 |