Incidental Mutation 'IGL01459:Ptchd3'
ID |
87939 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Ptchd3
|
Ensembl Gene |
ENSMUSG00000039198 |
Gene Name |
patched domain containing 3 |
Synonyms |
4930451E13Rik, 4933440L20Rik |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
IGL01459
|
Quality Score |
|
Status
|
|
Chromosome |
11 |
Chromosomal Location |
121721073-121734249 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
G to T
at 121721246 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Valine to Leucine
at position 40
(V40L)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000035709
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000036690]
|
AlphaFold |
Q0EEE2 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000036690
AA Change: V40L
PolyPhen 2
Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)
|
SMART Domains |
Protein: ENSMUSP00000035709 Gene: ENSMUSG00000039198 AA Change: V40L
Domain | Start | End | E-Value | Type |
Pfam:Patched
|
121 |
906 |
1.2e-177 |
PFAM |
Pfam:Sterol-sensing
|
363 |
508 |
3.4e-41 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000125199
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000126556
|
Coding Region Coverage |
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 41 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Atp2a2 |
A |
G |
5: 122,607,715 (GRCm39) |
S265P |
probably benign |
Het |
Brwd1 |
A |
G |
16: 95,848,620 (GRCm39) |
F520L |
probably damaging |
Het |
Cdh5 |
A |
T |
8: 104,864,449 (GRCm39) |
D470V |
probably damaging |
Het |
Cdr2l |
A |
G |
11: 115,281,378 (GRCm39) |
R41G |
probably damaging |
Het |
Csrnp1 |
C |
T |
9: 119,802,024 (GRCm39) |
C345Y |
probably damaging |
Het |
Dscaml1 |
T |
A |
9: 45,653,981 (GRCm39) |
Y1419* |
probably null |
Het |
Entpd3 |
T |
C |
9: 120,391,007 (GRCm39) |
S420P |
probably damaging |
Het |
Epb41 |
A |
G |
4: 131,691,439 (GRCm39) |
|
probably benign |
Het |
Erg |
A |
G |
16: 95,162,141 (GRCm39) |
S322P |
probably damaging |
Het |
Fndc3b |
T |
A |
3: 27,515,889 (GRCm39) |
H639L |
probably benign |
Het |
Grwd1 |
C |
T |
7: 45,479,834 (GRCm39) |
|
probably null |
Het |
Kbtbd8 |
A |
G |
6: 95,099,789 (GRCm39) |
N356D |
probably benign |
Het |
Kif15 |
A |
G |
9: 122,804,820 (GRCm39) |
E189G |
probably damaging |
Het |
Kif2b |
T |
C |
11: 91,467,849 (GRCm39) |
K145E |
possibly damaging |
Het |
Kif5c |
A |
G |
2: 49,625,569 (GRCm39) |
D613G |
probably benign |
Het |
Lipe |
T |
G |
7: 25,082,967 (GRCm39) |
Q457P |
probably damaging |
Het |
Lrp1b |
A |
T |
2: 40,750,726 (GRCm39) |
I2946N |
probably damaging |
Het |
Mtf2 |
C |
T |
5: 108,228,809 (GRCm39) |
P42S |
probably damaging |
Het |
Neb |
A |
G |
2: 52,066,804 (GRCm39) |
S5886P |
probably damaging |
Het |
Nmu |
A |
G |
5: 76,506,196 (GRCm39) |
|
probably null |
Het |
Nup153 |
T |
C |
13: 46,866,402 (GRCm39) |
E214G |
possibly damaging |
Het |
Or14c44 |
A |
C |
7: 86,061,759 (GRCm39) |
N104T |
probably damaging |
Het |
Or6c66b |
G |
A |
10: 129,376,410 (GRCm39) |
M1I |
probably null |
Het |
Paqr3 |
T |
C |
5: 97,243,796 (GRCm39) |
D306G |
probably benign |
Het |
Plxna2 |
A |
G |
1: 194,446,878 (GRCm39) |
D796G |
probably benign |
Het |
Prkra |
A |
G |
2: 76,460,780 (GRCm39) |
L306S |
probably damaging |
Het |
Psg20 |
T |
A |
7: 18,416,638 (GRCm39) |
E159D |
probably damaging |
Het |
Rfx5 |
T |
C |
3: 94,865,086 (GRCm39) |
|
probably benign |
Het |
Rimbp2 |
A |
G |
5: 128,865,275 (GRCm39) |
|
probably null |
Het |
Slc22a4 |
C |
A |
11: 53,877,303 (GRCm39) |
|
probably null |
Het |
Tars1 |
A |
G |
15: 11,391,940 (GRCm39) |
V265A |
possibly damaging |
Het |
Tatdn2 |
T |
A |
6: 113,686,992 (GRCm39) |
|
probably null |
Het |
Tenm4 |
C |
T |
7: 96,378,592 (GRCm39) |
P399L |
probably damaging |
Het |
Tmem135 |
A |
T |
7: 88,800,646 (GRCm39) |
D325E |
probably damaging |
Het |
Tmprss7 |
A |
T |
16: 45,483,706 (GRCm39) |
I556N |
probably benign |
Het |
Tom1l2 |
C |
T |
11: 60,171,095 (GRCm39) |
G23S |
probably damaging |
Het |
Ubr2 |
A |
G |
17: 47,241,435 (GRCm39) |
|
probably benign |
Het |
Vmn1r197 |
T |
C |
13: 22,512,241 (GRCm39) |
I54T |
probably benign |
Het |
Vmn2r116 |
T |
C |
17: 23,603,903 (GRCm39) |
C43R |
probably damaging |
Het |
Vps33a |
A |
G |
5: 123,673,371 (GRCm39) |
L405P |
probably benign |
Het |
Zfp473 |
C |
T |
7: 44,388,987 (GRCm39) |
D45N |
probably damaging |
Het |
|
Other mutations in Ptchd3 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00091:Ptchd3
|
APN |
11 |
121,721,972 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02815:Ptchd3
|
APN |
11 |
121,732,430 (GRCm39) |
missense |
probably benign |
0.03 |
PIT4418001:Ptchd3
|
UTSW |
11 |
121,732,566 (GRCm39) |
nonsense |
probably null |
|
PIT4791001:Ptchd3
|
UTSW |
11 |
121,722,875 (GRCm39) |
missense |
probably damaging |
0.98 |
R0018:Ptchd3
|
UTSW |
11 |
121,733,170 (GRCm39) |
missense |
probably benign |
|
R0068:Ptchd3
|
UTSW |
11 |
121,733,798 (GRCm39) |
missense |
probably damaging |
1.00 |
R0068:Ptchd3
|
UTSW |
11 |
121,733,798 (GRCm39) |
missense |
probably damaging |
1.00 |
R0316:Ptchd3
|
UTSW |
11 |
121,732,916 (GRCm39) |
missense |
possibly damaging |
0.91 |
R0331:Ptchd3
|
UTSW |
11 |
121,733,017 (GRCm39) |
missense |
probably benign |
0.00 |
R0715:Ptchd3
|
UTSW |
11 |
121,721,984 (GRCm39) |
missense |
possibly damaging |
0.90 |
R1200:Ptchd3
|
UTSW |
11 |
121,722,087 (GRCm39) |
critical splice donor site |
probably null |
|
R1595:Ptchd3
|
UTSW |
11 |
121,721,420 (GRCm39) |
missense |
probably damaging |
1.00 |
R1763:Ptchd3
|
UTSW |
11 |
121,733,368 (GRCm39) |
missense |
probably benign |
0.00 |
R1792:Ptchd3
|
UTSW |
11 |
121,732,377 (GRCm39) |
nonsense |
probably null |
|
R2098:Ptchd3
|
UTSW |
11 |
121,733,305 (GRCm39) |
missense |
probably damaging |
1.00 |
R4120:Ptchd3
|
UTSW |
11 |
121,721,572 (GRCm39) |
missense |
probably damaging |
1.00 |
R4533:Ptchd3
|
UTSW |
11 |
121,727,257 (GRCm39) |
missense |
probably damaging |
1.00 |
R4702:Ptchd3
|
UTSW |
11 |
121,727,235 (GRCm39) |
missense |
probably damaging |
1.00 |
R4761:Ptchd3
|
UTSW |
11 |
121,727,224 (GRCm39) |
missense |
possibly damaging |
0.95 |
R4868:Ptchd3
|
UTSW |
11 |
121,721,883 (GRCm39) |
missense |
possibly damaging |
0.85 |
R4948:Ptchd3
|
UTSW |
11 |
121,733,342 (GRCm39) |
missense |
probably damaging |
1.00 |
R5092:Ptchd3
|
UTSW |
11 |
121,721,972 (GRCm39) |
missense |
probably damaging |
1.00 |
R5954:Ptchd3
|
UTSW |
11 |
121,727,413 (GRCm39) |
intron |
probably benign |
|
R6199:Ptchd3
|
UTSW |
11 |
121,721,908 (GRCm39) |
missense |
probably benign |
0.17 |
R6431:Ptchd3
|
UTSW |
11 |
121,727,229 (GRCm39) |
missense |
probably benign |
0.06 |
R6484:Ptchd3
|
UTSW |
11 |
121,733,764 (GRCm39) |
missense |
possibly damaging |
0.91 |
R7936:Ptchd3
|
UTSW |
11 |
121,721,939 (GRCm39) |
nonsense |
probably null |
|
R8120:Ptchd3
|
UTSW |
11 |
121,733,034 (GRCm39) |
missense |
probably benign |
0.00 |
R8311:Ptchd3
|
UTSW |
11 |
121,727,299 (GRCm39) |
missense |
possibly damaging |
0.88 |
R9004:Ptchd3
|
UTSW |
11 |
121,732,687 (GRCm39) |
missense |
possibly damaging |
0.88 |
R9026:Ptchd3
|
UTSW |
11 |
121,721,682 (GRCm39) |
missense |
possibly damaging |
0.95 |
R9091:Ptchd3
|
UTSW |
11 |
121,733,180 (GRCm39) |
missense |
probably benign |
0.00 |
R9199:Ptchd3
|
UTSW |
11 |
121,721,741 (GRCm39) |
missense |
probably benign |
0.43 |
R9261:Ptchd3
|
UTSW |
11 |
121,722,956 (GRCm39) |
missense |
probably damaging |
0.96 |
R9270:Ptchd3
|
UTSW |
11 |
121,733,180 (GRCm39) |
missense |
probably benign |
0.00 |
R9412:Ptchd3
|
UTSW |
11 |
121,732,779 (GRCm39) |
missense |
possibly damaging |
0.54 |
R9419:Ptchd3
|
UTSW |
11 |
121,732,356 (GRCm39) |
missense |
possibly damaging |
0.94 |
R9435:Ptchd3
|
UTSW |
11 |
121,721,646 (GRCm39) |
missense |
probably benign |
0.00 |
R9491:Ptchd3
|
UTSW |
11 |
121,733,813 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1176:Ptchd3
|
UTSW |
11 |
121,727,302 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
Posted On |
2013-11-18 |