Incidental Mutation 'IGL01540:Gstcd'
ID |
90132 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Gstcd
|
Ensembl Gene |
ENSMUSG00000028018 |
Gene Name |
glutathione S-transferase, C-terminal domain containing |
Synonyms |
4933434L15Rik |
Accession Numbers |
|
Essential gene? |
Non essential
(E-score: 0.000)
|
Stock # |
IGL01540
|
Quality Score |
|
Status
|
|
Chromosome |
3 |
Chromosomal Location |
132687513-132797794 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to T
at 132692175 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Valine to Aspartic acid
at position 580
(V580D)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000079421
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000029651]
[ENSMUST00000080583]
|
AlphaFold |
Q5RL51 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000029651
AA Change: V580D
PolyPhen 2
Score 0.963 (Sensitivity: 0.78; Specificity: 0.95)
|
SMART Domains |
Protein: ENSMUSP00000029651 Gene: ENSMUSG00000028018 AA Change: V580D
Domain | Start | End | E-Value | Type |
low complexity region
|
52 |
62 |
N/A |
INTRINSIC |
low complexity region
|
168 |
181 |
N/A |
INTRINSIC |
low complexity region
|
195 |
205 |
N/A |
INTRINSIC |
low complexity region
|
208 |
229 |
N/A |
INTRINSIC |
Pfam:GidB
|
417 |
515 |
9e-9 |
PFAM |
Pfam:Methyltransf_32
|
424 |
548 |
1.1e-15 |
PFAM |
Pfam:MTS
|
430 |
508 |
5.3e-6 |
PFAM |
Pfam:Methyltransf_31
|
440 |
571 |
2.6e-11 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000080583
AA Change: V580D
PolyPhen 2
Score 0.963 (Sensitivity: 0.78; Specificity: 0.95)
|
SMART Domains |
Protein: ENSMUSP00000079421 Gene: ENSMUSG00000028018 AA Change: V580D
Domain | Start | End | E-Value | Type |
low complexity region
|
52 |
62 |
N/A |
INTRINSIC |
low complexity region
|
168 |
181 |
N/A |
INTRINSIC |
low complexity region
|
195 |
205 |
N/A |
INTRINSIC |
low complexity region
|
208 |
229 |
N/A |
INTRINSIC |
Pfam:GidB
|
418 |
516 |
1.5e-8 |
PFAM |
Pfam:Methyltransf_32
|
424 |
548 |
1.1e-15 |
PFAM |
Pfam:Methyltransf_31
|
440 |
569 |
2.5e-11 |
PFAM |
|
Coding Region Coverage |
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 20 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adgrb3 |
A |
G |
1: 25,151,252 (GRCm39) |
|
probably null |
Het |
Ceacam12 |
T |
C |
7: 17,805,727 (GRCm39) |
|
probably benign |
Het |
Cyp2j13 |
A |
T |
4: 95,956,959 (GRCm39) |
|
probably benign |
Het |
Golim4 |
T |
G |
3: 75,794,047 (GRCm39) |
E538A |
possibly damaging |
Het |
Hspg2 |
A |
G |
4: 137,247,017 (GRCm39) |
T1115A |
probably damaging |
Het |
Maea |
T |
C |
5: 33,515,910 (GRCm39) |
S18P |
probably benign |
Het |
Mertk |
T |
C |
2: 128,625,887 (GRCm39) |
L674P |
probably damaging |
Het |
Nol8 |
A |
T |
13: 49,815,146 (GRCm39) |
Q400L |
probably benign |
Het |
Nt5el |
T |
C |
13: 105,218,761 (GRCm39) |
S32P |
possibly damaging |
Het |
Or10a3b |
G |
T |
7: 108,444,887 (GRCm39) |
T110N |
probably damaging |
Het |
Or6b2 |
A |
G |
1: 92,408,202 (GRCm39) |
L47P |
probably damaging |
Het |
Pycard |
T |
A |
7: 127,592,002 (GRCm39) |
D113V |
probably benign |
Het |
S100z |
G |
A |
13: 95,613,861 (GRCm39) |
T83M |
probably damaging |
Het |
Sacs |
A |
G |
14: 61,429,084 (GRCm39) |
D381G |
possibly damaging |
Het |
Spata31h1 |
A |
T |
10: 82,120,016 (GRCm39) |
H4331Q |
possibly damaging |
Het |
Tbpl2 |
T |
C |
2: 23,984,985 (GRCm39) |
H53R |
probably benign |
Het |
Tlr6 |
T |
C |
5: 65,112,629 (GRCm39) |
R93G |
probably damaging |
Het |
Trabd |
A |
G |
15: 88,968,998 (GRCm39) |
E172G |
probably benign |
Het |
Vrk3 |
A |
G |
7: 44,416,568 (GRCm39) |
H277R |
probably damaging |
Het |
Zfp512 |
T |
C |
5: 31,630,840 (GRCm39) |
V338A |
probably damaging |
Het |
|
Other mutations in Gstcd |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01800:Gstcd
|
APN |
3 |
132,790,335 (GRCm39) |
critical splice donor site |
probably null |
|
IGL02434:Gstcd
|
APN |
3 |
132,701,963 (GRCm39) |
splice site |
probably benign |
|
IGL02720:Gstcd
|
APN |
3 |
132,777,722 (GRCm39) |
missense |
probably benign |
0.00 |
R0367:Gstcd
|
UTSW |
3 |
132,692,138 (GRCm39) |
splice site |
probably benign |
|
R0378:Gstcd
|
UTSW |
3 |
132,692,169 (GRCm39) |
missense |
probably damaging |
1.00 |
R0382:Gstcd
|
UTSW |
3 |
132,692,169 (GRCm39) |
missense |
probably damaging |
1.00 |
R0465:Gstcd
|
UTSW |
3 |
132,688,905 (GRCm39) |
missense |
probably benign |
0.04 |
R1295:Gstcd
|
UTSW |
3 |
132,711,389 (GRCm39) |
missense |
probably damaging |
1.00 |
R1861:Gstcd
|
UTSW |
3 |
132,688,868 (GRCm39) |
missense |
probably damaging |
1.00 |
R2056:Gstcd
|
UTSW |
3 |
132,787,814 (GRCm39) |
missense |
probably benign |
0.00 |
R2331:Gstcd
|
UTSW |
3 |
132,704,641 (GRCm39) |
missense |
probably damaging |
0.98 |
R2513:Gstcd
|
UTSW |
3 |
132,788,082 (GRCm39) |
missense |
possibly damaging |
0.87 |
R2513:Gstcd
|
UTSW |
3 |
132,788,081 (GRCm39) |
missense |
possibly damaging |
0.59 |
R3547:Gstcd
|
UTSW |
3 |
132,790,599 (GRCm39) |
missense |
possibly damaging |
0.86 |
R4022:Gstcd
|
UTSW |
3 |
132,787,829 (GRCm39) |
missense |
probably damaging |
1.00 |
R4713:Gstcd
|
UTSW |
3 |
132,688,860 (GRCm39) |
missense |
probably damaging |
1.00 |
R4877:Gstcd
|
UTSW |
3 |
132,711,314 (GRCm39) |
splice site |
probably benign |
|
R5152:Gstcd
|
UTSW |
3 |
132,790,717 (GRCm39) |
missense |
possibly damaging |
0.95 |
R5165:Gstcd
|
UTSW |
3 |
132,790,440 (GRCm39) |
missense |
probably damaging |
0.99 |
R6106:Gstcd
|
UTSW |
3 |
132,704,675 (GRCm39) |
missense |
probably benign |
0.02 |
R6177:Gstcd
|
UTSW |
3 |
132,787,834 (GRCm39) |
missense |
probably damaging |
1.00 |
R7100:Gstcd
|
UTSW |
3 |
132,790,704 (GRCm39) |
missense |
probably benign |
0.01 |
R7264:Gstcd
|
UTSW |
3 |
132,790,540 (GRCm39) |
missense |
probably benign |
0.00 |
R7785:Gstcd
|
UTSW |
3 |
132,787,868 (GRCm39) |
missense |
probably damaging |
0.99 |
R7786:Gstcd
|
UTSW |
3 |
132,787,868 (GRCm39) |
missense |
probably damaging |
0.99 |
R7972:Gstcd
|
UTSW |
3 |
132,777,894 (GRCm39) |
missense |
probably benign |
0.10 |
R7975:Gstcd
|
UTSW |
3 |
132,777,863 (GRCm39) |
missense |
probably damaging |
1.00 |
R8029:Gstcd
|
UTSW |
3 |
132,787,868 (GRCm39) |
missense |
probably damaging |
0.99 |
R8036:Gstcd
|
UTSW |
3 |
132,787,868 (GRCm39) |
missense |
probably damaging |
0.99 |
R8088:Gstcd
|
UTSW |
3 |
132,787,868 (GRCm39) |
missense |
probably damaging |
0.99 |
R8716:Gstcd
|
UTSW |
3 |
132,688,950 (GRCm39) |
missense |
probably damaging |
1.00 |
R8722:Gstcd
|
UTSW |
3 |
132,777,822 (GRCm39) |
nonsense |
probably null |
|
R9276:Gstcd
|
UTSW |
3 |
132,777,665 (GRCm39) |
missense |
probably damaging |
1.00 |
R9575:Gstcd
|
UTSW |
3 |
132,704,708 (GRCm39) |
missense |
probably damaging |
1.00 |
R9789:Gstcd
|
UTSW |
3 |
132,790,357 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2013-12-03 |