Incidental Mutation 'IGL01554:Ermard'
| ID |
90659 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Ermard
|
| Ensembl Gene |
ENSMUSG00000036552 |
| Gene Name |
ER membrane associated RNA degradation |
| Synonyms |
2210404J11Rik, 2410011O22Rik |
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.172)
|
| Stock # |
IGL01554
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
17 |
| Chromosomal Location |
15261813-15310307 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to G
at 15271855 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Glycine
at position 338
(D338G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000095005
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000040594]
[ENSMUST00000097393]
[ENSMUST00000226213]
|
| AlphaFold |
E9Q048 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000040594
|
| SMART Domains |
Protein: ENSMUSP00000043677
Gene: ENSMUSG00000036552
| Domain | Start | End | E-Value | Type |
|---|
|
transmembrane domain
|
130 |
152 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000097393
AA Change: D338G
PolyPhen 2
Score 0.943 (Sensitivity: 0.80; Specificity: 0.95)
|
| SMART Domains |
Protein: ENSMUSP00000095005
Gene: ENSMUSG00000036552
AA Change: D338G
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:DUF4209
|
133 |
214 |
3.1e-27 |
PFAM |
|
low complexity region
|
390 |
399 |
N/A |
INTRINSIC |
|
SCOP:g1pnb.1
|
429 |
478 |
4e-3 |
SMART |
|
low complexity region
|
583 |
599 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000226213
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000226384
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000226464
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000227177
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000227545
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000227548
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000227786
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000231241
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000231568
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene contains 2 transmembrane domains near the C-terminus and is localized in the endoplasmic reticulum. Knockout of this gene in developing rat brain showed that it may be involved in neuronal migration. Mutations in this gene are associated with periventricular nodular heterotopia-6 (PVNH6). Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Dec 2013]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 37 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abca8a |
T |
C |
11: 109,932,992 (GRCm39) |
I1211V |
probably benign |
Het |
| Adgre4 |
A |
G |
17: 56,124,090 (GRCm39) |
S497G |
probably damaging |
Het |
| Ankrd55 |
T |
C |
13: 112,459,601 (GRCm39) |
M65T |
possibly damaging |
Het |
| Entrep3 |
A |
G |
3: 89,092,888 (GRCm39) |
T257A |
probably damaging |
Het |
| Espl1 |
T |
C |
15: 102,221,660 (GRCm39) |
L983P |
probably damaging |
Het |
| Ext2 |
A |
C |
2: 93,642,294 (GRCm39) |
L192V |
probably damaging |
Het |
| Fam83b |
T |
A |
9: 76,409,403 (GRCm39) |
Y241F |
probably benign |
Het |
| Fbxl12 |
G |
A |
9: 20,550,215 (GRCm39) |
P170S |
possibly damaging |
Het |
| Fsip2 |
C |
A |
2: 82,807,622 (GRCm39) |
P1314T |
possibly damaging |
Het |
| Greb1l |
A |
G |
18: 10,522,144 (GRCm39) |
R747G |
probably benign |
Het |
| Hspa1a |
G |
T |
17: 35,189,500 (GRCm39) |
P468T |
probably damaging |
Het |
| Lamb1 |
T |
C |
12: 31,356,976 (GRCm39) |
C1028R |
probably damaging |
Het |
| Lcn8 |
C |
T |
2: 25,544,198 (GRCm39) |
A40V |
possibly damaging |
Het |
| Lmbrd2 |
A |
G |
15: 9,165,906 (GRCm39) |
Y260C |
possibly damaging |
Het |
| Mex3d |
G |
T |
10: 80,217,869 (GRCm39) |
N449K |
possibly damaging |
Het |
| Mgat4f |
A |
G |
1: 134,317,696 (GRCm39) |
N156S |
probably damaging |
Het |
| Ncam2 |
A |
G |
16: 81,309,823 (GRCm39) |
K438E |
possibly damaging |
Het |
| Nudt7 |
A |
G |
8: 114,874,625 (GRCm39) |
|
probably benign |
Het |
| Nup214 |
C |
A |
2: 31,941,084 (GRCm39) |
S39* |
probably null |
Het |
| Opn5 |
A |
G |
17: 42,918,089 (GRCm39) |
S58P |
probably damaging |
Het |
| Or6c74 |
T |
C |
10: 129,870,052 (GRCm39) |
S186P |
probably damaging |
Het |
| Or7e173 |
T |
C |
9: 19,938,704 (GRCm39) |
I177V |
possibly damaging |
Het |
| Pcsk1 |
T |
A |
13: 75,280,426 (GRCm39) |
N750K |
probably benign |
Het |
| Pdzrn3 |
T |
C |
6: 101,127,502 (GRCm39) |
N1055D |
probably damaging |
Het |
| Phf2 |
T |
A |
13: 48,959,355 (GRCm39) |
K884* |
probably null |
Het |
| Prkdc |
A |
G |
16: 15,470,166 (GRCm39) |
N191S |
probably benign |
Het |
| Prpf8 |
A |
T |
11: 75,386,472 (GRCm39) |
Q987L |
probably damaging |
Het |
| Prrc2c |
G |
A |
1: 162,538,355 (GRCm39) |
P425L |
probably damaging |
Het |
| Rab36 |
T |
C |
10: 74,886,520 (GRCm39) |
I166T |
possibly damaging |
Het |
| Rab3gap1 |
G |
T |
1: 127,855,745 (GRCm39) |
L461F |
possibly damaging |
Het |
| Rnls |
A |
T |
19: 33,368,499 (GRCm39) |
Y27N |
possibly damaging |
Het |
| Sncaip |
A |
T |
18: 53,002,006 (GRCm39) |
I176F |
possibly damaging |
Het |
| Tagap |
G |
A |
17: 8,151,780 (GRCm39) |
G322S |
probably benign |
Het |
| Tas2r130 |
C |
T |
6: 131,607,046 (GRCm39) |
A250T |
probably benign |
Het |
| Tgs1 |
A |
G |
4: 3,593,632 (GRCm39) |
S507G |
probably null |
Het |
| Ttn |
T |
C |
2: 76,706,056 (GRCm39) |
|
probably benign |
Het |
| Zp2 |
T |
C |
7: 119,737,548 (GRCm39) |
K246E |
possibly damaging |
Het |
|
| Other mutations in Ermard |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00725:Ermard
|
APN |
17 |
15,208,328 (GRCm39) |
splice site |
probably benign |
|
|
IGL01832:Ermard
|
APN |
17 |
15,280,111 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL02045:Ermard
|
APN |
17 |
15,271,826 (GRCm39) |
unclassified |
probably benign |
|
|
IGL02332:Ermard
|
APN |
17 |
15,210,807 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
IGL02525:Ermard
|
APN |
17 |
15,279,601 (GRCm39) |
splice site |
probably benign |
|
|
IGL03335:Ermard
|
APN |
17 |
15,279,668 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Angelos
|
UTSW |
17 |
15,280,032 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
Eminence
|
UTSW |
17 |
15,273,467 (GRCm39) |
splice site |
probably null |
|
|
R8203_ermard_787
|
UTSW |
17 |
15,240,548 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
Rechthand
|
UTSW |
17 |
15,279,596 (GRCm39) |
splice site |
probably benign |
|
|
sanctus
|
UTSW |
17 |
15,273,643 (GRCm39) |
missense |
probably benign |
0.00 |
|
PIT4504001:Ermard
|
UTSW |
17 |
15,279,084 (GRCm39) |
nonsense |
probably null |
|
|
R0211:Ermard
|
UTSW |
17 |
15,242,205 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0211:Ermard
|
UTSW |
17 |
15,242,205 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R0722:Ermard
|
UTSW |
17 |
15,242,390 (GRCm39) |
missense |
probably benign |
0.13 |
|
R0785:Ermard
|
UTSW |
17 |
15,242,239 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2019:Ermard
|
UTSW |
17 |
15,273,527 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3696:Ermard
|
UTSW |
17 |
15,273,638 (GRCm39) |
missense |
probably benign |
0.01 |
|
R3697:Ermard
|
UTSW |
17 |
15,273,638 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4077:Ermard
|
UTSW |
17 |
15,273,638 (GRCm39) |
missense |
probably benign |
0.04 |
|
R4383:Ermard
|
UTSW |
17 |
15,280,128 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R5424:Ermard
|
UTSW |
17 |
15,280,032 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R6313:Ermard
|
UTSW |
17 |
15,273,467 (GRCm39) |
splice site |
probably null |
|
|
R7685:Ermard
|
UTSW |
17 |
15,279,724 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7800:Ermard
|
UTSW |
17 |
15,277,065 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7802:Ermard
|
UTSW |
17 |
15,281,423 (GRCm39) |
missense |
probably benign |
|
|
R7895:Ermard
|
UTSW |
17 |
15,283,875 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
R8203:Ermard
|
UTSW |
17 |
15,240,548 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R8229:Ermard
|
UTSW |
17 |
15,279,596 (GRCm39) |
splice site |
probably benign |
|
|
R8318:Ermard
|
UTSW |
17 |
15,242,334 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R8369:Ermard
|
UTSW |
17 |
15,273,560 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9179:Ermard
|
UTSW |
17 |
15,273,495 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9329:Ermard
|
UTSW |
17 |
15,273,643 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9449:Ermard
|
UTSW |
17 |
15,273,554 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R9506:Ermard
|
UTSW |
17 |
15,281,368 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9792:Ermard
|
UTSW |
17 |
15,281,441 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9793:Ermard
|
UTSW |
17 |
15,281,441 (GRCm39) |
missense |
probably damaging |
1.00 |
|
| Posted On |
2013-12-09 |
Incidental Mutation