Incidental Mutation 'R1136:Ercc6l2'
| ID |
95043 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Ercc6l2
|
| Ensembl Gene |
ENSMUSG00000021470 |
| Gene Name |
excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2 |
| Synonyms |
0610007P08Rik, 9330134C04Rik, 1700019D06Rik |
| MMRRC Submission |
039209-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.278)
|
| Stock # |
R1136 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
13 |
| Chromosomal Location |
63963054-64048116 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to A
at 64016934 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Valine to Aspartic acid
at position 679
(V679D)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000069488
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000067821]
[ENSMUST00000095724]
[ENSMUST00000159957]
|
| AlphaFold |
Q9JIM3 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000067821
AA Change: V679D
PolyPhen 2
Score 0.747 (Sensitivity: 0.85; Specificity: 0.92)
|
| SMART Domains |
Protein: ENSMUSP00000069488
Gene: ENSMUSG00000021470
AA Change: V679D
| Domain | Start | End | E-Value | Type |
|---|
|
DEXDc
|
118 |
331 |
1.94e-33 |
SMART |
|
Blast:DEXDc
|
380 |
425 |
3e-13 |
BLAST |
|
HELICc
|
536 |
619 |
3.12e-23 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000095724
|
| SMART Domains |
Protein: ENSMUSP00000093392
Gene: ENSMUSG00000021470
| Domain | Start | End | E-Value | Type |
|---|
|
DEXDc
|
1 |
183 |
2.72e-14 |
SMART |
|
Blast:DEXDc
|
232 |
277 |
3e-13 |
BLAST |
|
HELICc
|
388 |
471 |
3.12e-23 |
SMART |
|
low complexity region
|
817 |
827 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000109776
|
| Predicted Effect |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000159957
|
| SMART Domains |
Protein: ENSMUSP00000124912
Gene: ENSMUSG00000021470
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:SNF2_N
|
101 |
195 |
2.1e-8 |
PFAM |
|
| Meta Mutation Damage Score |
0.1795 |
| Coding Region Coverage |
- 1x: 98.9%
- 3x: 98.1%
- 10x: 95.7%
- 20x: 90.5%
|
| Validation Efficiency |
100% (52/52) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the Snf2 family of helicase-like proteins. The encoded protein may play a role in DNA repair and mitochondrial function. Mutations in this gene have been associated with bone marrow failure syndrome 2. Alternatively spliced transcript variants that encode different protein isoforms have been described. [provided by RefSeq, Apr 2014]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 48 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adcy2 |
C |
T |
13: 68,878,436 (GRCm39) |
G401S |
probably damaging |
Het |
| Akap8l |
C |
T |
17: 32,551,457 (GRCm39) |
R511H |
probably damaging |
Het |
| Bmp2 |
T |
C |
2: 133,402,847 (GRCm39) |
F133L |
probably damaging |
Het |
| C1qtnf3 |
A |
G |
15: 10,978,670 (GRCm39) |
E290G |
probably damaging |
Het |
| Ccdc180 |
C |
A |
4: 45,914,589 (GRCm39) |
D701E |
probably benign |
Het |
| Chmp7 |
C |
T |
14: 69,956,899 (GRCm39) |
M336I |
probably benign |
Het |
| Csmd3 |
A |
T |
15: 47,539,213 (GRCm39) |
I1508N |
probably damaging |
Het |
| Dgkh |
T |
C |
14: 78,862,329 (GRCm39) |
R80G |
probably damaging |
Het |
| Dock1 |
T |
A |
7: 134,449,902 (GRCm39) |
V805D |
possibly damaging |
Het |
| Eef2 |
C |
CN |
10: 81,014,603 (GRCm39) |
|
probably null |
Het |
| Esp6 |
T |
C |
17: 40,876,284 (GRCm39) |
Y111H |
probably benign |
Het |
| Focad |
T |
C |
4: 88,244,417 (GRCm39) |
F799S |
unknown |
Het |
| Foxred1 |
C |
A |
9: 35,116,333 (GRCm39) |
M438I |
probably benign |
Het |
| Galnt11 |
T |
G |
5: 25,463,943 (GRCm39) |
V405G |
probably damaging |
Het |
| Gm4847 |
A |
G |
1: 166,457,935 (GRCm39) |
Y473H |
probably damaging |
Het |
| Gpbp1l1 |
C |
T |
4: 116,450,115 (GRCm39) |
T461M |
probably damaging |
Het |
| Hnrnpu |
A |
T |
1: 178,158,790 (GRCm39) |
|
probably benign |
Het |
| Kmt2d |
A |
T |
15: 98,755,646 (GRCm39) |
|
probably benign |
Het |
| Matr3 |
A |
G |
18: 35,705,948 (GRCm39) |
H291R |
probably damaging |
Het |
| Mfsd14b |
C |
T |
13: 65,243,506 (GRCm39) |
S46N |
probably benign |
Het |
| Mtch1 |
C |
T |
17: 29,552,744 (GRCm39) |
|
probably null |
Het |
| Muc6 |
G |
T |
7: 141,218,685 (GRCm39) |
T1996N |
possibly damaging |
Het |
| Mylk |
T |
C |
16: 34,820,688 (GRCm39) |
I1880T |
probably damaging |
Het |
| N4bp2 |
T |
C |
5: 65,965,815 (GRCm39) |
L1288P |
probably damaging |
Het |
| Ncf2 |
A |
T |
1: 152,706,123 (GRCm39) |
H245L |
probably damaging |
Het |
| Nmd3 |
T |
A |
3: 69,654,049 (GRCm39) |
|
probably benign |
Het |
| Npdc1 |
G |
T |
2: 25,297,727 (GRCm39) |
A127S |
probably benign |
Het |
| Nudt3 |
C |
A |
17: 27,842,080 (GRCm39) |
R27L |
probably benign |
Het |
| Nwd1 |
C |
T |
8: 73,424,397 (GRCm39) |
|
probably benign |
Het |
| Pex7 |
T |
A |
10: 19,764,434 (GRCm39) |
I170F |
probably benign |
Het |
| Phyhipl |
A |
G |
10: 70,404,902 (GRCm39) |
V57A |
probably damaging |
Het |
| Pkhd1 |
G |
A |
1: 20,593,053 (GRCm39) |
P1687S |
possibly damaging |
Het |
| Plekhj1 |
A |
T |
10: 80,633,654 (GRCm39) |
|
probably null |
Het |
| Prss21 |
T |
A |
17: 24,091,968 (GRCm39) |
L312H |
probably damaging |
Het |
| Samsn1 |
T |
C |
16: 75,670,408 (GRCm39) |
I232V |
probably null |
Het |
| Sec63 |
A |
T |
10: 42,682,542 (GRCm39) |
D411V |
probably damaging |
Het |
| Slc44a4 |
C |
T |
17: 35,146,998 (GRCm39) |
H343Y |
probably damaging |
Het |
| Sucla2 |
C |
T |
14: 73,798,074 (GRCm39) |
|
probably benign |
Het |
| Tedc2 |
T |
A |
17: 24,435,291 (GRCm39) |
E366V |
probably damaging |
Het |
| Tedc2 |
C |
A |
17: 24,435,292 (GRCm39) |
E366* |
probably null |
Het |
| Tent2 |
C |
T |
13: 93,312,205 (GRCm39) |
|
probably null |
Het |
| Tmtc3 |
A |
G |
10: 100,307,905 (GRCm39) |
|
probably benign |
Het |
| Trafd1 |
C |
T |
5: 121,511,387 (GRCm39) |
R477H |
possibly damaging |
Het |
| Uhrf2 |
T |
A |
19: 30,033,626 (GRCm39) |
|
probably benign |
Het |
| Vmn2r68 |
T |
A |
7: 84,871,549 (GRCm39) |
D578V |
possibly damaging |
Het |
| Wdcp |
G |
A |
12: 4,901,655 (GRCm39) |
V504I |
possibly damaging |
Het |
| Wdr93 |
T |
C |
7: 79,423,196 (GRCm39) |
Y487H |
probably damaging |
Het |
| Zfp457 |
T |
C |
13: 67,441,846 (GRCm39) |
H147R |
probably damaging |
Het |
|
| Other mutations in Ercc6l2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00430:Ercc6l2
|
APN |
13 |
64,006,133 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL00678:Ercc6l2
|
APN |
13 |
63,992,427 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL00765:Ercc6l2
|
APN |
13 |
63,996,586 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
IGL01062:Ercc6l2
|
APN |
13 |
63,995,268 (GRCm39) |
missense |
probably null |
1.00 |
|
IGL01655:Ercc6l2
|
APN |
13 |
63,967,566 (GRCm39) |
nonsense |
probably null |
|
|
IGL02175:Ercc6l2
|
APN |
13 |
64,017,004 (GRCm39) |
utr 3 prime |
probably benign |
|
|
IGL02201:Ercc6l2
|
APN |
13 |
64,000,783 (GRCm39) |
missense |
probably benign |
0.12 |
|
IGL02351:Ercc6l2
|
APN |
13 |
64,001,497 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02358:Ercc6l2
|
APN |
13 |
64,001,497 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02622:Ercc6l2
|
APN |
13 |
64,001,437 (GRCm39) |
splice site |
probably null |
|
|
PIT4812001:Ercc6l2
|
UTSW |
13 |
64,006,071 (GRCm39) |
missense |
possibly damaging |
0.58 |
|
R0142:Ercc6l2
|
UTSW |
13 |
64,020,320 (GRCm39) |
unclassified |
probably benign |
|
|
R0648:Ercc6l2
|
UTSW |
13 |
63,992,459 (GRCm39) |
missense |
probably benign |
0.04 |
|
R1536:Ercc6l2
|
UTSW |
13 |
63,972,685 (GRCm39) |
missense |
possibly damaging |
0.81 |
|
R1706:Ercc6l2
|
UTSW |
13 |
64,020,272 (GRCm39) |
unclassified |
probably benign |
|
|
R2108:Ercc6l2
|
UTSW |
13 |
64,019,802 (GRCm39) |
unclassified |
probably benign |
|
|
R2111:Ercc6l2
|
UTSW |
13 |
63,982,563 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2126:Ercc6l2
|
UTSW |
13 |
63,996,585 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2154:Ercc6l2
|
UTSW |
13 |
64,013,821 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3551:Ercc6l2
|
UTSW |
13 |
63,992,409 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3773:Ercc6l2
|
UTSW |
13 |
63,989,264 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3923:Ercc6l2
|
UTSW |
13 |
64,018,549 (GRCm39) |
unclassified |
probably benign |
|
|
R4233:Ercc6l2
|
UTSW |
13 |
64,019,982 (GRCm39) |
unclassified |
probably benign |
|
|
R4782:Ercc6l2
|
UTSW |
13 |
63,982,552 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4928:Ercc6l2
|
UTSW |
13 |
64,042,627 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R5163:Ercc6l2
|
UTSW |
13 |
64,046,845 (GRCm39) |
utr 3 prime |
probably benign |
|
|
R5268:Ercc6l2
|
UTSW |
13 |
64,016,925 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R5423:Ercc6l2
|
UTSW |
13 |
64,020,072 (GRCm39) |
unclassified |
probably benign |
|
|
R6128:Ercc6l2
|
UTSW |
13 |
64,001,563 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R6164:Ercc6l2
|
UTSW |
13 |
64,020,158 (GRCm39) |
unclassified |
probably benign |
|
|
R7238:Ercc6l2
|
UTSW |
13 |
64,013,798 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R7295:Ercc6l2
|
UTSW |
13 |
63,967,589 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R7708:Ercc6l2
|
UTSW |
13 |
63,989,328 (GRCm39) |
nonsense |
probably null |
|
|
R8085:Ercc6l2
|
UTSW |
13 |
63,992,367 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8131:Ercc6l2
|
UTSW |
13 |
63,982,561 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8259:Ercc6l2
|
UTSW |
13 |
64,020,285 (GRCm39) |
missense |
|
|
|
R8372:Ercc6l2
|
UTSW |
13 |
64,001,563 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R8479:Ercc6l2
|
UTSW |
13 |
63,972,629 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R9034:Ercc6l2
|
UTSW |
13 |
63,992,447 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R9065:Ercc6l2
|
UTSW |
13 |
63,967,866 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R9557:Ercc6l2
|
UTSW |
13 |
63,989,936 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9700:Ercc6l2
|
UTSW |
13 |
63,967,525 (GRCm39) |
missense |
probably benign |
0.32 |
|
R9763:Ercc6l2
|
UTSW |
13 |
63,982,438 (GRCm39) |
missense |
probably damaging |
1.00 |
|
RF013:Ercc6l2
|
UTSW |
13 |
64,000,831 (GRCm39) |
missense |
probably benign |
0.06 |
|
Z1088:Ercc6l2
|
UTSW |
13 |
64,001,542 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
| Predicted Primers |
PCR Primer
(F):5'- CAGGGAGTGCCAGGAAATTCTGAC -3'
(R):5'- TGTCTGAAAATGCCCACGGAGG -3'
Sequencing Primer
(F):5'- GTGCCAGGAAATTCTGACATACTG -3'
(R):5'- ATGCCCACGGAGGTCATATTATC -3'
|
| Posted On |
2014-01-05 |
Incidental Mutation