Mutagenetix > Incidental Mutation

Incidental Mutation 'R1172:Bst1'

99547

Institutional Source

Beutler Lab

Gene Symbol

Bst1

Ensembl Gene

ENSMUSG00000029082

Gene Name

bone marrow stromal cell antigen 1

Synonyms

Bsta1, CD157, Bp3, 114/A10, Ly65

MMRRC Submission

039245-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.057) question?

Stock #

R1172 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

43976235-44000810 bp(+) (GRCm39)

Type of Mutation

splice site (4 bp from exon)

DNA Base Change (assembly)

A to G at 43982750 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000098796 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000101237] [ENSMUST00000114047] [ENSMUST00000126976]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000101237

SMART Domains

Protein: ENSMUSP00000098796
Gene: ENSMUSG00000029082

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
Pfam:Rib_hydrolayse	35	273	5.9e-103	PFAM
low complexity region	277	288	N/A	INTRINSIC
low complexity region	295	311	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000114047

SMART Domains

Protein: ENSMUSP00000109681
Gene: ENSMUSG00000039753

Domain	Start	End	E-Value	Type
Pfam:Hemerythrin	19	132	4.4e-11	PFAM
FBOX	202	242	2.31e-9	SMART
low complexity region	283	304	N/A	INTRINSIC
LRR	349	373	2.43e2	SMART
LRR	376	401	4.87e-4	SMART
low complexity region	475	486	N/A	INTRINSIC
LRR	590	615	2.45e0	SMART
LRR	618	643	4.65e-1	SMART
Blast:LRR	644	675	2e-13	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000118126

SMART Domains

Protein: ENSMUSP00000113593
Gene: ENSMUSG00000029082

Domain	Start	End	E-Value	Type
Pfam:Rib_hydrolayse	1	164	3.8e-69	PFAM
low complexity region	168	179	N/A	INTRINSIC
low complexity region	186	202	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000126976

SMART Domains

Protein: ENSMUSP00000143382
Gene: ENSMUSG00000029082

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
PDB:1ISM\|B	28	54	2e-7	PDB
SCOP:d1isia_	29	56	6e-12	SMART

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.6%
20x: 93.5%

Validation Efficiency

98% (62/63)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Bone marrow stromal cell antigen-1 is a stromal cell line-derived glycosylphosphatidylinositol-anchored molecule that facilitates pre-B-cell growth. The deduced amino acid sequence exhibits 33% similarity with CD38. BST1 expression is enhanced in bone marrow stromal cell lines derived from patients with rheumatoid arthritis. The polyclonal B-cell abnormalities in rheumatoid arthritis may be, at least in part, attributed to BST1 overexpression in the stromal cell population. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice show delayed peritoneal B-1 cell development and a rise in CD38^low/- B-lineage cells in bone marrow and spleen. The systemic thymus-independent-2 antigen-induced IgG3 and mucosal thymus-dependent antigen-elicited IgA responses are selectively impaired. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 60 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Accsl	A	T	2: 93,696,589 (GRCm39)		probably benign	Het
Adam7	T	G	14: 68,752,370 (GRCm39)	K371N	probably damaging	Het
Adgrv1	A	T	13: 81,705,182 (GRCm39)	S1543T	probably damaging	Het
Agbl4	A	T	4: 111,513,515 (GRCm39)		probably benign	Het
Arid1b	T	A	17: 5,389,575 (GRCm39)	I1707N	probably damaging	Het
Atp10a	T	C	7: 58,453,514 (GRCm39)	V864A	probably benign	Het
Bivm	A	G	1: 44,165,942 (GRCm39)	T131A	probably benign	Het
C9orf72	C	A	4: 35,218,630 (GRCm39)	E76D	probably damaging	Het
Cblb	T	C	16: 52,006,603 (GRCm39)		probably benign	Het
Ccdc28b	T	C	4: 129,514,682 (GRCm39)		probably benign	Het
Cmas	G	T	6: 142,702,604 (GRCm39)	G36C	probably benign	Het
Eml6	A	G	11: 29,699,824 (GRCm39)	S1771P	possibly damaging	Het
Epc1	A	C	18: 6,490,525 (GRCm39)	Y31D	probably damaging	Het
Fbn1	A	T	2: 125,236,607 (GRCm39)	C358S	probably benign	Het
Fbxl13	A	T	5: 21,825,602 (GRCm39)		probably benign	Het
Fermt2	T	C	14: 45,697,425 (GRCm39)	D642G	possibly damaging	Het
Fmnl2	A	T	2: 52,962,286 (GRCm39)	N257I	probably damaging	Het
Fry	G	A	5: 150,404,959 (GRCm39)	W793*	probably null	Het
Fsd2	T	C	7: 81,209,518 (GRCm39)	D108G	probably benign	Het
Glipr1l2	C	A	10: 111,919,371 (GRCm39)	L31I	possibly damaging	Het
Gm10608	CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	9: 118,989,784 (GRCm39)		probably null	Het
Gm10801	C	T	2: 98,494,252 (GRCm39)		probably benign	Het
Gm21718	T	C	14: 51,553,348 (GRCm39)		noncoding transcript	Het
Gpld1	A	G	13: 25,141,549 (GRCm39)		probably null	Het
Gtf3c2	A	T	5: 31,325,419 (GRCm39)	Y500N	probably damaging	Het
Hbs1l	A	G	10: 21,180,537 (GRCm39)	D73G	probably damaging	Het
Idh1	G	T	1: 65,200,319 (GRCm39)	N348K	probably benign	Het
Kank4	T	C	4: 98,653,806 (GRCm39)	Y874C	probably damaging	Het
Lamc2	A	T	1: 153,042,033 (GRCm39)	S34T	probably damaging	Het
Laptm4a	T	C	12: 8,986,716 (GRCm39)	V258A	probably damaging	Het
Lrrc19	A	T	4: 94,526,626 (GRCm39)	Y310*	probably null	Het
Map3k5	G	A	10: 19,932,394 (GRCm39)		probably benign	Het
Map7	G	A	10: 20,121,045 (GRCm39)	E92K	probably damaging	Het
Mettl24	G	A	10: 40,613,704 (GRCm39)	A148T	probably benign	Het
Mosmo	A	G	7: 120,329,745 (GRCm39)	Y122C	probably benign	Het
Ncr1	T	A	7: 4,341,120 (GRCm39)	I37N	probably benign	Het
Nkx3-1	T	C	14: 69,429,434 (GRCm39)	S151P	probably damaging	Het
Npm2	T	A	14: 70,889,661 (GRCm39)	K54*	probably null	Het
Npr1	T	A	3: 90,368,689 (GRCm39)	D457V	probably benign	Het
Nudt21	T	C	8: 94,757,757 (GRCm39)		probably benign	Het
Pcnt	A	T	10: 76,228,878 (GRCm39)		probably null	Het
Pik3r4	G	T	9: 105,540,373 (GRCm39)	G754C	probably damaging	Het
Rftn2	A	G	1: 55,250,376 (GRCm39)	V123A	probably damaging	Het
Rpa1	A	T	11: 75,203,219 (GRCm39)	V392D	probably damaging	Het
Rxfp2	T	C	5: 149,975,021 (GRCm39)	V210A	probably benign	Het
Slc45a4	C	T	15: 73,477,278 (GRCm39)		probably benign	Het
Syndig1l	T	A	12: 84,725,942 (GRCm39)		probably null	Het
Tctn1	G	A	5: 122,389,752 (GRCm39)	R257*	probably null	Het
Tenm4	A	T	7: 96,497,251 (GRCm39)	E1179V	probably damaging	Het
Txlnb	A	G	10: 17,718,504 (GRCm39)	N445S	probably benign	Het
Tyrp1	C	T	4: 80,763,105 (GRCm39)	Q331*	probably null	Het
Ubap2l	A	T	3: 89,930,807 (GRCm39)	S413T	probably benign	Het
Vdr	A	T	15: 97,767,214 (GRCm39)	Y185N	probably benign	Het
Vmn2r66	G	T	7: 84,654,799 (GRCm39)	D503E	probably benign	Het
Vmn2r72	T	A	7: 85,401,152 (GRCm39)	E89V	probably damaging	Het
Vmn2r87	T	C	10: 130,313,453 (GRCm39)	T438A	probably benign	Het
Xrcc6	A	G	15: 81,915,364 (GRCm39)	D94G	probably damaging	Het
Ywhaq	T	C	12: 21,445,024 (GRCm39)	N207S	probably benign	Het
Zfp185	A	T	X: 72,042,929 (GRCm39)	E138D	possibly damaging	Het
Zfp981	G	A	4: 146,622,221 (GRCm39)	S382N	probably benign	Het

Other mutations in Bst1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01906:Bst1	APN	5	43,994,861 (GRCm39)	missense	probably damaging	0.98
IGL02146:Bst1	APN	5	43,983,678 (GRCm39)	missense	probably damaging	1.00
IGL03008:Bst1	APN	5	43,983,604 (GRCm39)	critical splice acceptor site	probably null
ossobuco	UTSW	5	43,977,932 (GRCm39)	missense	probably benign	0.04
R0145:Bst1	UTSW	5	43,976,414 (GRCm39)	missense	probably damaging	1.00
R1158:Bst1	UTSW	5	43,997,834 (GRCm39)	critical splice donor site	probably null
R3926:Bst1	UTSW	5	43,997,796 (GRCm39)	missense	possibly damaging	0.81
R4438:Bst1	UTSW	5	43,982,682 (GRCm39)	splice site	probably null
R4622:Bst1	UTSW	5	43,976,261 (GRCm39)	utr 5 prime	probably benign
R4852:Bst1	UTSW	5	43,977,867 (GRCm39)	missense	probably benign	0.16
R4936:Bst1	UTSW	5	43,997,799 (GRCm39)	missense	probably damaging	0.97
R6048:Bst1	UTSW	5	43,976,306 (GRCm39)	intron	probably benign
R6505:Bst1	UTSW	5	43,977,932 (GRCm39)	missense	probably benign	0.04
R7442:Bst1	UTSW	5	43,979,084 (GRCm39)	missense	probably benign	0.00
R7643:Bst1	UTSW	5	43,997,791 (GRCm39)	missense	probably benign	0.02
R8849:Bst1	UTSW	5	43,977,927 (GRCm39)	missense	possibly damaging	0.87
R8900:Bst1	UTSW	5	43,977,942 (GRCm39)	missense	possibly damaging	0.87
R8956:Bst1	UTSW	5	43,982,716 (GRCm39)	nonsense	probably null
R9010:Bst1	UTSW	5	43,982,695 (GRCm39)	missense	possibly damaging	0.81
Z1177:Bst1	UTSW	5	43,976,374 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

Posted On

2014-01-15