Incidental Mutation 'R1164:Lrwd1'
ID 100814
Institutional Source Beutler Lab
Gene Symbol Lrwd1
Ensembl Gene ENSMUSG00000029703
Gene Name leucine-rich repeats and WD repeat domain containing 1
Synonyms Orca, 1200011O22Rik
MMRRC Submission 039237-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.862) question?
Stock # R1164 (G1)
Quality Score 225
Status Not validated
Chromosome 5
Chromosomal Location 136151920-136164928 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 136159844 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Histidine to Glutamine at position 406 (H406Q)
Ref Sequence ENSEMBL: ENSMUSP00000006301 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000006301] [ENSMUST00000150406]
AlphaFold Q8BUI3
Predicted Effect probably benign
Transcript: ENSMUST00000006301
AA Change: H406Q

PolyPhen 2 Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
SMART Domains Protein: ENSMUSP00000006301
Gene: ENSMUSG00000029703
AA Change: H406Q

DomainStartEndE-ValueType
low complexity region 25 38 N/A INTRINSIC
LRR_TYP 46 69 3.16e-3 SMART
LRR 90 113 1.58e2 SMART
WD40 271 327 6.36e1 SMART
Blast:WD40 330 380 2e-12 BLAST
WD40 383 423 1.49e-7 SMART
WD40 434 473 2.28e2 SMART
Blast:WD40 484 527 6e-15 BLAST
WD40 542 583 1.42e2 SMART
low complexity region 591 602 N/A INTRINSIC
Blast:WD40 603 646 8e-14 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000128255
SMART Domains Protein: ENSMUSP00000119546
Gene: ENSMUSG00000029703

DomainStartEndE-ValueType
Blast:WD40 13 66 2e-9 BLAST
Predicted Effect noncoding transcript
Transcript: ENSMUST00000132976
Predicted Effect noncoding transcript
Transcript: ENSMUST00000139908
Predicted Effect noncoding transcript
Transcript: ENSMUST00000148475
Predicted Effect noncoding transcript
Transcript: ENSMUST00000149673
Predicted Effect noncoding transcript
Transcript: ENSMUST00000199786
Predicted Effect probably benign
Transcript: ENSMUST00000150406
SMART Domains Protein: ENSMUSP00000121513
Gene: ENSMUSG00000029703

DomainStartEndE-ValueType
LRR_TYP 55 78 3.16e-3 SMART
LRR 99 122 1.58e2 SMART
Coding Region Coverage
  • 1x: 99.0%
  • 3x: 98.2%
  • 10x: 96.0%
  • 20x: 91.8%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene interacts with components of the origin recognition complex (ORC) and regulates the formation of the prereplicative complex. The encoded protein stabilizes the ORC and therefore aids in DNA replication. This protein is required for the G1/S phase transition of the cell cycle. In addition, the encoded protein binds to trimethylated histone H3 in heterochromatin and recruits the ORC and lysine methyltransferases, which help maintain the repressive heterochromatic state. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2015]
Allele List at MGI
Other mutations in this stock
Total: 67 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca3 T A 17: 24,621,305 (GRCm39) M1055K probably damaging Het
Adprh A T 16: 38,270,702 (GRCm39) D34E probably benign Het
Aldh1a1 A T 19: 20,595,310 (GRCm39) M80L probably benign Het
Arap2 T A 5: 62,840,820 (GRCm39) D682V probably damaging Het
Atp4a T A 7: 30,417,117 (GRCm39) L500Q probably benign Het
Atp6v1c2 T C 12: 17,358,317 (GRCm39) E10G probably damaging Het
B4galt2 G A 4: 117,734,141 (GRCm39) R299W possibly damaging Het
Bltp3a T C 17: 28,114,354 (GRCm39) probably null Het
Brinp1 A C 4: 68,716,928 (GRCm39) S307A probably benign Het
Cacna2d1 G A 5: 16,566,874 (GRCm39) probably null Het
Ccdc3 T C 2: 5,146,077 (GRCm39) V137A possibly damaging Het
Ccnb1ip1 T C 14: 51,029,594 (GRCm39) K156R possibly damaging Het
Cfap77 A T 2: 28,852,700 (GRCm39) W191R probably damaging Het
Chga A G 12: 102,529,304 (GRCm39) E427G probably damaging Het
Chrnd A T 1: 87,120,267 (GRCm39) Y32F probably benign Het
Cks1b C A 3: 89,323,249 (GRCm39) probably benign Het
Creld2 G A 15: 88,704,834 (GRCm39) W103* probably null Het
Dip2a C A 10: 76,112,231 (GRCm39) R1098L possibly damaging Het
Dmbx1 T A 4: 115,775,455 (GRCm39) H275L probably damaging Het
Dmrt2 A G 19: 25,655,357 (GRCm39) M319V possibly damaging Het
Dock8 A G 19: 25,067,391 (GRCm39) Y345C probably benign Het
Dpp6 A G 5: 27,926,103 (GRCm39) T668A probably benign Het
Eef1d A G 15: 75,774,526 (GRCm39) probably null Het
Epb41l3 A G 17: 69,581,762 (GRCm39) T568A possibly damaging Het
Erc2 A G 14: 28,024,929 (GRCm39) R603G probably damaging Het
Fam83d T C 2: 158,625,170 (GRCm39) S254P probably damaging Het
Fcgr4 A T 1: 170,856,739 (GRCm39) H202L possibly damaging Het
Gm4922 C T 10: 18,659,469 (GRCm39) A418T possibly damaging Het
Kmo A G 1: 175,486,125 (GRCm39) H416R probably benign Het
Lao1 A G 4: 118,822,602 (GRCm39) N174S probably benign Het
Magoh A G 4: 107,744,459 (GRCm39) I143V probably benign Het
Mpz A G 1: 170,986,008 (GRCm39) H49R possibly damaging Het
Nav1 T C 1: 135,400,148 (GRCm39) N474S probably benign Het
Ndufb10 T G 17: 24,941,757 (GRCm39) E68D probably benign Het
Obscn T C 11: 58,926,913 (GRCm39) D5534G possibly damaging Het
Or13c7d T C 4: 43,770,991 (GRCm39) T7A probably benign Het
Or14j5 T A 17: 38,161,575 (GRCm39) F31I probably damaging Het
Or1j16 A T 2: 36,530,132 (GRCm39) Y27F probably benign Het
Or4d10 A T 19: 12,051,605 (GRCm39) Y130* probably null Het
Or52l1 A T 7: 104,830,040 (GRCm39) F160Y probably benign Het
Or8k30 C A 2: 86,339,028 (GRCm39) T75K probably damaging Het
Padi1 A T 4: 140,559,640 (GRCm39) V79E possibly damaging Het
Pdha2 A G 3: 140,917,260 (GRCm39) Y83H probably damaging Het
Phpt1 A G 2: 25,464,727 (GRCm39) I42T probably damaging Het
Pot1b A C 17: 55,981,085 (GRCm39) S310A probably benign Het
Ptpn13 G A 5: 103,637,639 (GRCm39) V176I probably damaging Het
Ptprf A G 4: 118,114,689 (GRCm39) S189P probably damaging Het
Rere A T 4: 150,619,341 (GRCm39) Q381L unknown Het
Rfwd3 C T 8: 112,014,874 (GRCm39) R326Q probably damaging Het
Scn8a G A 15: 100,938,043 (GRCm39) C1804Y probably benign Het
Sema3c G A 5: 17,883,312 (GRCm39) D307N probably benign Het
Siah2 T C 3: 58,583,737 (GRCm39) E183G probably benign Het
Smarca5 G A 8: 81,437,260 (GRCm39) L699F probably damaging Het
Smo T A 6: 29,754,718 (GRCm39) S263T probably benign Het
Sox2 A G 3: 34,704,848 (GRCm39) E95G probably damaging Het
T T C 17: 8,658,771 (GRCm39) S171P probably benign Het
Tmc7 G T 7: 118,141,247 (GRCm39) A628D probably benign Het
Tmem45a2 A G 16: 56,869,789 (GRCm39) S52P probably damaging Het
Tubb3 C T 8: 124,148,186 (GRCm39) A373V probably damaging Het
Upp2 A G 2: 58,653,716 (GRCm39) Y69C probably damaging Het
Utp4 A G 8: 107,627,476 (GRCm39) probably null Het
Vmn1r59 T A 7: 5,457,410 (GRCm39) M117L probably benign Het
Xkr8 T C 4: 132,459,722 (GRCm39) S19G probably benign Het
Zbed6 G A 1: 133,586,941 (GRCm39) T132I probably damaging Het
Zbtb24 T C 10: 41,340,523 (GRCm39) Y518H probably damaging Het
Zfp324 T C 7: 12,705,551 (GRCm39) I580T probably benign Het
Zfp995 G A 17: 22,098,960 (GRCm39) H425Y probably damaging Het
Other mutations in Lrwd1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01593:Lrwd1 APN 5 136,163,483 (GRCm39) missense probably damaging 1.00
IGL01827:Lrwd1 APN 5 136,160,372 (GRCm39) nonsense probably null
IGL01919:Lrwd1 APN 5 136,164,729 (GRCm39) nonsense probably null
IGL02327:Lrwd1 APN 5 136,152,318 (GRCm39) missense probably damaging 1.00
R0614:Lrwd1 UTSW 5 136,152,354 (GRCm39) missense probably damaging 0.99
R0882:Lrwd1 UTSW 5 136,152,254 (GRCm39) splice site probably null
R1137:Lrwd1 UTSW 5 136,162,273 (GRCm39) missense probably benign 0.01
R1302:Lrwd1 UTSW 5 136,161,267 (GRCm39) missense probably benign 0.05
R1838:Lrwd1 UTSW 5 136,161,242 (GRCm39) missense probably benign 0.00
R2114:Lrwd1 UTSW 5 136,159,332 (GRCm39) missense probably damaging 1.00
R2116:Lrwd1 UTSW 5 136,159,332 (GRCm39) missense probably damaging 1.00
R2117:Lrwd1 UTSW 5 136,159,332 (GRCm39) missense probably damaging 1.00
R4514:Lrwd1 UTSW 5 136,160,402 (GRCm39) missense probably benign 0.00
R4595:Lrwd1 UTSW 5 136,152,810 (GRCm39) missense probably benign
R5304:Lrwd1 UTSW 5 136,160,004 (GRCm39) missense possibly damaging 0.49
R5384:Lrwd1 UTSW 5 136,152,728 (GRCm39) missense possibly damaging 0.84
R5719:Lrwd1 UTSW 5 136,161,093 (GRCm39) splice site probably null
R5771:Lrwd1 UTSW 5 136,152,516 (GRCm39) missense possibly damaging 0.95
R5791:Lrwd1 UTSW 5 136,159,887 (GRCm39) missense probably benign 0.44
R6431:Lrwd1 UTSW 5 136,161,888 (GRCm39) missense possibly damaging 0.90
R7074:Lrwd1 UTSW 5 136,152,511 (GRCm39) missense probably benign 0.01
R7132:Lrwd1 UTSW 5 136,152,129 (GRCm39) missense possibly damaging 0.71
R7838:Lrwd1 UTSW 5 136,160,983 (GRCm39) missense probably damaging 1.00
R7873:Lrwd1 UTSW 5 136,152,792 (GRCm39) missense probably benign 0.00
R8033:Lrwd1 UTSW 5 136,152,079 (GRCm39) missense probably damaging 1.00
R8738:Lrwd1 UTSW 5 136,162,257 (GRCm39) nonsense probably null
R8828:Lrwd1 UTSW 5 136,164,787 (GRCm39) missense probably benign 0.00
R8841:Lrwd1 UTSW 5 136,152,037 (GRCm39) missense possibly damaging 0.51
R9515:Lrwd1 UTSW 5 136,160,413 (GRCm39) missense probably benign 0.09
R9767:Lrwd1 UTSW 5 136,162,856 (GRCm39) missense possibly damaging 0.77
Z1176:Lrwd1 UTSW 5 136,162,862 (GRCm39) missense probably damaging 1.00
Z1177:Lrwd1 UTSW 5 136,160,395 (GRCm39) missense possibly damaging 0.92
Predicted Primers
Posted On 2014-01-15