Incidental Mutation 'R1166:Ebf3'
| ID |
101020 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Ebf3
|
| Ensembl Gene |
ENSMUSG00000010476 |
| Gene Name |
early B cell factor 3 |
| Synonyms |
3110018A08Rik, Olf-1/EBF-like 2, O/E-2 |
| MMRRC Submission |
039239-MU
|
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R1166 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
7 |
| Chromosomal Location |
136795402-136916174 bp(-) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
C to T
at 136914896 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000147829
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000033378]
[ENSMUST00000106118]
[ENSMUST00000168203]
[ENSMUST00000169486]
[ENSMUST00000210774]
|
| AlphaFold |
O08791 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000033378
|
| SMART Domains |
Protein: ENSMUSP00000033378
Gene: ENSMUSG00000010476
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
94 |
106 |
N/A |
INTRINSIC |
|
IPT
|
253 |
337 |
2.09e-7 |
SMART |
|
HLH
|
338 |
387 |
1.43e-1 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000106118
|
| SMART Domains |
Protein: ENSMUSP00000101724
Gene: ENSMUSG00000010476
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:COE1_DBD
|
17 |
247 |
2.6e-151 |
PFAM |
|
IPT
|
262 |
346 |
2.09e-7 |
SMART |
|
HLH
|
347 |
396 |
1.43e-1 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000168203
|
| SMART Domains |
Protein: ENSMUSP00000130334
Gene: ENSMUSG00000010476
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
94 |
106 |
N/A |
INTRINSIC |
|
IPT
|
253 |
337 |
2.09e-7 |
SMART |
|
HLH
|
338 |
387 |
1.43e-1 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000169486
|
| SMART Domains |
Protein: ENSMUSP00000132563
Gene: ENSMUSG00000010476
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
94 |
106 |
N/A |
INTRINSIC |
|
IPT
|
253 |
337 |
2.09e-7 |
SMART |
|
HLH
|
338 |
387 |
1.43e-1 |
SMART |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000209864
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000210774
|
| Coding Region Coverage |
- 1x: 99.4%
- 3x: 98.3%
- 10x: 95.0%
- 20x: 86.3%
|
| Validation Efficiency |
96% (43/45) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the early B-cell factor (EBF) family of DNA binding transcription factors. EBF proteins are involved in B-cell differentiation, bone development and neurogenesis, and may also function as tumor suppressors. The encoded protein inhibits cell survival through the regulation of genes involved in cell cycle arrest and apoptosis, and aberrant methylation or deletion of this gene may play a role in multiple malignancies including glioblastoma multiforme and gastric carcinoma. [provided by RefSeq, Sep 2011]
PHENOTYPE: Homozygous mutant mice die perinatally and exhibit impaired olfactory neuron projection. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 36 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A2ml1 |
T |
C |
6: 128,547,880 (GRCm39) |
K286R |
probably benign |
Het |
| Arhgef10l |
T |
C |
4: 140,302,581 (GRCm39) |
|
probably benign |
Het |
| Ccdc175 |
T |
G |
12: 72,152,706 (GRCm39) |
K733T |
probably damaging |
Het |
| Cenpn |
T |
G |
8: 117,652,946 (GRCm39) |
I39R |
probably damaging |
Het |
| Cfap53 |
A |
T |
18: 74,433,251 (GRCm39) |
Y112F |
possibly damaging |
Het |
| Cngb1 |
C |
A |
8: 95,986,809 (GRCm39) |
C361F |
probably damaging |
Het |
| Ctf2 |
T |
C |
7: 127,318,685 (GRCm39) |
T105A |
probably benign |
Het |
| Dnah7b |
A |
T |
1: 46,364,970 (GRCm39) |
T3584S |
probably damaging |
Het |
| Ep300 |
A |
G |
15: 81,514,265 (GRCm39) |
|
probably benign |
Het |
| Fbxo17 |
T |
A |
7: 28,432,953 (GRCm39) |
V158E |
probably damaging |
Het |
| Fbxw24 |
T |
C |
9: 109,436,066 (GRCm39) |
E322G |
probably benign |
Het |
| Gm5698 |
G |
T |
1: 31,016,366 (GRCm39) |
D228E |
probably damaging |
Het |
| Hfm1 |
A |
T |
5: 107,059,277 (GRCm39) |
D248E |
probably benign |
Het |
| Insm2 |
T |
C |
12: 55,647,281 (GRCm39) |
S342P |
probably benign |
Het |
| Krt36 |
G |
A |
11: 99,993,654 (GRCm39) |
R395C |
probably benign |
Het |
| Lrrc37 |
A |
G |
11: 103,506,209 (GRCm39) |
S1920P |
probably benign |
Het |
| Lsm14b |
T |
A |
2: 179,673,334 (GRCm39) |
|
probably benign |
Het |
| Map1a |
A |
G |
2: 121,130,741 (GRCm39) |
E519G |
probably damaging |
Het |
| Mfsd14a |
T |
C |
3: 116,427,543 (GRCm39) |
|
probably benign |
Het |
| Mfsd4b5 |
T |
C |
10: 39,846,419 (GRCm39) |
Y387C |
probably damaging |
Het |
| Mybpc2 |
T |
C |
7: 44,154,449 (GRCm39) |
N1063D |
possibly damaging |
Het |
| Nlrp10 |
T |
A |
7: 108,524,217 (GRCm39) |
H421L |
probably damaging |
Het |
| Nup155 |
A |
T |
15: 8,187,244 (GRCm39) |
H1391L |
probably damaging |
Het |
| Or4a81 |
A |
G |
2: 89,619,675 (GRCm39) |
V7A |
possibly damaging |
Het |
| Pacrg |
A |
T |
17: 10,622,268 (GRCm39) |
Y235* |
probably null |
Het |
| Pde4dip |
T |
A |
3: 97,620,512 (GRCm39) |
D1629V |
possibly damaging |
Het |
| Prl8a2 |
G |
T |
13: 27,537,935 (GRCm39) |
S204I |
possibly damaging |
Het |
| Sec24a |
A |
T |
11: 51,624,294 (GRCm39) |
M356K |
possibly damaging |
Het |
| Sh3tc2 |
A |
C |
18: 62,124,247 (GRCm39) |
S972R |
probably damaging |
Het |
| Shc2 |
C |
T |
10: 79,456,946 (GRCm39) |
V557M |
probably damaging |
Het |
| Slc2a9 |
A |
G |
5: 38,539,384 (GRCm39) |
|
probably null |
Het |
| Tcaf1 |
T |
C |
6: 42,655,612 (GRCm39) |
I455V |
probably benign |
Het |
| Umodl1 |
T |
G |
17: 31,221,772 (GRCm39) |
|
probably benign |
Het |
| Wdr27 |
T |
C |
17: 15,112,733 (GRCm39) |
T658A |
probably damaging |
Het |
| Zfp318 |
T |
C |
17: 46,720,618 (GRCm39) |
Y1119H |
possibly damaging |
Het |
| Zfp939 |
C |
A |
7: 39,122,763 (GRCm39) |
|
noncoding transcript |
Het |
|
| Other mutations in Ebf3 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01081:Ebf3
|
APN |
7 |
136,827,625 (GRCm39) |
splice site |
probably benign |
|
|
IGL01938:Ebf3
|
APN |
7 |
136,911,047 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02076:Ebf3
|
APN |
7 |
136,833,030 (GRCm39) |
missense |
possibly damaging |
0.61 |
|
IGL02260:Ebf3
|
APN |
7 |
136,807,919 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02303:Ebf3
|
APN |
7 |
136,911,094 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02828:Ebf3
|
APN |
7 |
136,909,247 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL03211:Ebf3
|
APN |
7 |
136,833,033 (GRCm39) |
missense |
probably benign |
0.21 |
|
R0885:Ebf3
|
UTSW |
7 |
136,827,613 (GRCm39) |
missense |
probably benign |
0.10 |
|
R0962:Ebf3
|
UTSW |
7 |
136,826,932 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1255:Ebf3
|
UTSW |
7 |
136,826,941 (GRCm39) |
missense |
probably benign |
0.35 |
|
R1804:Ebf3
|
UTSW |
7 |
136,802,250 (GRCm39) |
missense |
possibly damaging |
0.89 |
|
R4298:Ebf3
|
UTSW |
7 |
136,826,958 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R4393:Ebf3
|
UTSW |
7 |
136,826,886 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5061:Ebf3
|
UTSW |
7 |
136,915,288 (GRCm39) |
missense |
possibly damaging |
0.57 |
|
R5880:Ebf3
|
UTSW |
7 |
136,800,367 (GRCm39) |
missense |
probably benign |
0.04 |
|
R6024:Ebf3
|
UTSW |
7 |
136,802,264 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6109:Ebf3
|
UTSW |
7 |
136,807,955 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6634:Ebf3
|
UTSW |
7 |
136,802,889 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6958:Ebf3
|
UTSW |
7 |
136,800,994 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
R6997:Ebf3
|
UTSW |
7 |
136,826,994 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R7578:Ebf3
|
UTSW |
7 |
136,915,261 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7771:Ebf3
|
UTSW |
7 |
136,911,092 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8133:Ebf3
|
UTSW |
7 |
136,914,872 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8185:Ebf3
|
UTSW |
7 |
136,827,607 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R8356:Ebf3
|
UTSW |
7 |
136,800,916 (GRCm39) |
missense |
probably benign |
0.41 |
|
R8456:Ebf3
|
UTSW |
7 |
136,800,916 (GRCm39) |
missense |
probably benign |
0.41 |
|
R8520:Ebf3
|
UTSW |
7 |
136,802,853 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9025:Ebf3
|
UTSW |
7 |
136,914,098 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R9086:Ebf3
|
UTSW |
7 |
136,800,994 (GRCm39) |
missense |
possibly damaging |
0.66 |
|
R9679:Ebf3
|
UTSW |
7 |
136,832,964 (GRCm39) |
missense |
possibly damaging |
0.67 |
|
RF022:Ebf3
|
UTSW |
7 |
136,915,671 (GRCm39) |
start gained |
probably benign |
|
|
| Predicted Primers |
|
| Posted On |
2014-01-15 |
Incidental Mutation