Mutagenetix > Incidental Mutation

Incidental Mutation 'R1167:Nek4'

101181

Institutional Source

Beutler Lab

Gene Symbol

Nek4

Ensembl Gene

ENSMUSG00000021918

Gene Name

NIMA (never in mitosis gene a)-related expressed kinase 4

Synonyms

MMRRC Submission

039240-MU

Accession Numbers

Essential gene?

Possibly non essential (E-score: 0.368) question?

Stock #

R1167 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

30673334-30710778 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 30696302 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Histidine at position 499 (R499H)

Ref Sequence

ENSEMBL: ENSMUSP00000154090 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000050171] [ENSMUST00000226551] [ENSMUST00000228328]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000050171

SMART Domains

Protein: ENSMUSP00000057915
Gene: ENSMUSG00000021918

Domain	Start	End	E-Value	Type
S_TKc	6	261	6.93e-91	SMART
low complexity region	429	439	N/A	INTRINSIC
low complexity region	627	647	N/A	INTRINSIC
low complexity region	751	767	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000226146
AA Change: R336H

Predicted Effect

probably benign
Transcript: ENSMUST00000226551

Predicted Effect

possibly damaging
Transcript: ENSMUST00000228328
AA Change: R499H

PolyPhen 2 Score 0.684 (Sensitivity: 0.86; Specificity: 0.92)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000228392

Coding Region Coverage

1x: 99.2%
3x: 98.4%
10x: 96.6%
20x: 93.3%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a serine/threonine protein kinase required for normal entry into replicative senescence. The encoded protein also is involved in cell cycle arrest in response to double-stranded DNA damage. Finally, this protein plays a role in maintaining cilium integrity, and defects in this gene have been associated with ciliopathies. [provided by RefSeq, Jan 2017]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930433I11Rik	A	T	7: 40,643,003 (GRCm39)	D315V	probably damaging	Het
Acr	T	C	15: 89,458,177 (GRCm39)	I286T	probably damaging	Het
Adnp	A	G	2: 168,026,420 (GRCm39)	S292P	probably benign	Het
Apol6	T	A	15: 76,931,308 (GRCm39)	Y17*	probably null	Het
Arhgap22	A	G	14: 33,065,264 (GRCm39)		probably null	Het
Bfar	A	G	16: 13,516,758 (GRCm39)	K202E	possibly damaging	Het
Bmpr2	A	T	1: 59,898,463 (GRCm39)	S470C	probably damaging	Het
Cep135	A	G	5: 76,772,484 (GRCm39)	E623G	probably damaging	Het
Clcn3	A	G	8: 61,375,822 (GRCm39)		probably null	Het
Clptm1	A	T	7: 19,368,136 (GRCm39)	M523K	probably damaging	Het
Cyp26b1	A	G	6: 84,561,312 (GRCm39)	W117R	probably damaging	Het
Dnmt3c	T	G	2: 153,553,701 (GRCm39)		probably null	Het
Dst	A	G	1: 34,262,939 (GRCm39)	E2212G	probably damaging	Het
Edrf1	A	G	7: 133,245,795 (GRCm39)	T238A	probably benign	Het
Elmo1	T	C	13: 20,369,625 (GRCm39)	V10A	probably damaging	Het
Ermp1	A	G	19: 29,606,079 (GRCm39)	S225P	possibly damaging	Het
Fem1al	C	T	11: 29,773,567 (GRCm39)	R630H	probably damaging	Het
Fes	A	T	7: 80,032,857 (GRCm39)	L296Q	probably damaging	Het
Foxn1	A	T	11: 78,249,892 (GRCm39)	N544K	probably damaging	Het
Gga1	C	G	15: 78,772,370 (GRCm39)	N223K	probably damaging	Het
Gm10608	CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	CAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA	9: 118,989,784 (GRCm39)		probably null	Het
Gm4884	A	T	7: 40,693,336 (GRCm39)	Q435L	possibly damaging	Het
Gm8444	T	C	15: 81,727,581 (GRCm39)		probably benign	Het
Ift140	T	G	17: 25,254,719 (GRCm39)	S131A	probably benign	Het
Ipo4	A	G	14: 55,872,477 (GRCm39)	L88P	probably damaging	Het
Itgal	G	A	7: 126,900,111 (GRCm39)	S123N	probably damaging	Het
Kcnn3	C	T	3: 89,472,259 (GRCm39)	Q344*	probably null	Het
Lrrc8e	A	T	8: 4,285,337 (GRCm39)	M521L	probably benign	Het
Myocd	G	T	11: 65,087,203 (GRCm39)	D113E	possibly damaging	Het
Notch3	T	C	17: 32,341,719 (GRCm39)	D2011G	possibly damaging	Het
Ola1	A	G	2: 72,927,538 (GRCm39)	V347A	probably damaging	Het
Or13p5	C	A	4: 118,591,829 (GRCm39)	F34L	possibly damaging	Het
Or6c75	G	A	10: 129,337,019 (GRCm39)	V89I	probably benign	Het
Or8u10	A	G	2: 85,915,635 (GRCm39)	V162A	probably benign	Het
Oxct2b	A	G	4: 123,011,378 (GRCm39)	T433A	probably damaging	Het
P2ry14	T	C	3: 59,022,552 (GRCm39)	R312G	probably damaging	Het
Pbrm1	A	G	14: 30,772,099 (GRCm39)	N398D	probably damaging	Het
Pdc	T	C	1: 150,208,996 (GRCm39)	Y160H	probably damaging	Het
Pdlim2	C	T	14: 70,402,228 (GRCm39)	R296H	probably damaging	Het
Pop4	A	T	7: 37,962,693 (GRCm39)	D190E	probably benign	Het
Prb1c	G	A	6: 132,338,553 (GRCm39)	P222S	unknown	Het
R3hdm4	A	G	10: 79,747,907 (GRCm39)		probably null	Het
Rab1a	C	A	11: 20,173,172 (GRCm39)	T91K	possibly damaging	Het
Rad9a	A	G	19: 4,247,501 (GRCm39)	V215A	possibly damaging	Het
Rassf3	A	G	10: 121,252,159 (GRCm39)	V84A	probably damaging	Het
Rftn2	G	A	1: 55,243,458 (GRCm39)	T270M	probably damaging	Het
Rho	A	G	6: 115,912,384 (GRCm39)	T100A	probably damaging	Het
Rnft2	T	C	5: 118,366,947 (GRCm39)	I264V	possibly damaging	Het
Robo3	A	T	9: 37,335,203 (GRCm39)	Y567*	probably null	Het
Rpp14	T	A	14: 8,083,705 (GRCm38)		probably null	Het
Rtkn2	T	C	10: 67,833,450 (GRCm39)	S98P	probably damaging	Het
Ryr2	A	G	13: 11,674,999 (GRCm39)	V3376A	possibly damaging	Het
Sbf2	A	T	7: 109,963,756 (GRCm39)	W1030R	probably damaging	Het
Setbp1	G	A	18: 78,900,451 (GRCm39)	A1072V	possibly damaging	Het
Slc4a10	A	G	2: 62,058,918 (GRCm39)	K142E	probably damaging	Het
Slc52a2	A	G	15: 76,423,791 (GRCm39)	E40G	probably benign	Het
Slc8a2	A	G	7: 15,891,312 (GRCm39)	N784S	possibly damaging	Het
Spats2l	A	T	1: 57,982,270 (GRCm39)	Q384L	probably damaging	Het
Steap4	A	C	5: 8,026,520 (GRCm39)	K161T	probably benign	Het
Taf10	T	C	7: 105,392,438 (GRCm39)	S188G	probably benign	Het
Tbc1d4	C	T	14: 101,845,455 (GRCm39)	D148N	probably damaging	Het
Tenm2	T	G	11: 36,755,511 (GRCm39)	K162N	probably benign	Het
Tmem147	A	G	7: 30,427,221 (GRCm39)	V146A	probably benign	Het
Tnfsf8	A	G	4: 63,755,323 (GRCm39)	S100P	possibly damaging	Het
Trim56	T	C	5: 137,141,374 (GRCm39)	Y714C	probably damaging	Het
Ubxn8	A	G	8: 34,131,929 (GRCm39)	S13P	probably damaging	Het
Usp49	A	G	17: 47,983,151 (GRCm39)	D52G	possibly damaging	Het
Vegfc	A	C	8: 54,639,078 (GRCm39)	Y408S	probably benign	Het
Vmn2r77	A	G	7: 86,450,954 (GRCm39)	N280S	probably benign	Het
Vmn2r8	T	A	5: 108,951,042 (GRCm39)	L134F	probably benign	Het
Wdfy3	T	A	5: 102,023,797 (GRCm39)	I2437F	probably benign	Het
Wwc2	A	T	8: 48,311,814 (GRCm39)	L783*	probably null	Het
Zer1	C	T	2: 29,998,258 (GRCm39)	R351H	probably benign	Het
Zfp715	A	T	7: 42,947,861 (GRCm39)	F700I	possibly damaging	Het
Zfp995	G	A	17: 22,098,960 (GRCm39)	H425Y	probably damaging	Het

Other mutations in Nek4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01124:Nek4	APN	14	30,692,219 (GRCm39)	missense	probably benign	0.00
IGL01746:Nek4	APN	14	30,699,541 (GRCm39)	splice site	probably null
IGL02403:Nek4	APN	14	30,686,008 (GRCm39)	nonsense	probably null
IGL02606:Nek4	APN	14	30,685,916 (GRCm39)	missense	probably benign	0.01
IGL03261:Nek4	APN	14	30,697,247 (GRCm39)	missense	probably benign	0.05
R0266:Nek4	UTSW	14	30,679,253 (GRCm39)	missense	probably damaging	1.00
R0436:Nek4	UTSW	14	30,692,429 (GRCm39)	missense	probably damaging	0.96
R0520:Nek4	UTSW	14	30,681,263 (GRCm39)	splice site	probably benign
R0523:Nek4	UTSW	14	30,701,995 (GRCm39)	missense	probably benign	0.18
R0849:Nek4	UTSW	14	30,679,253 (GRCm39)	missense	probably damaging	1.00
R1465:Nek4	UTSW	14	30,678,844 (GRCm39)	missense	probably damaging	1.00
R1465:Nek4	UTSW	14	30,678,844 (GRCm39)	missense	probably damaging	1.00
R1484:Nek4	UTSW	14	30,704,290 (GRCm39)	missense	possibly damaging	0.56
R1563:Nek4	UTSW	14	30,704,408 (GRCm39)	missense	probably damaging	1.00
R1616:Nek4	UTSW	14	30,709,094 (GRCm39)	missense	probably damaging	0.98
R1670:Nek4	UTSW	14	30,704,384 (GRCm39)	missense	probably damaging	1.00
R1991:Nek4	UTSW	14	30,678,910 (GRCm39)	missense	probably damaging	0.98
R2045:Nek4	UTSW	14	30,675,880 (GRCm39)	missense	probably damaging	1.00
R2157:Nek4	UTSW	14	30,701,925 (GRCm39)	splice site	probably null
R2925:Nek4	UTSW	14	30,673,667 (GRCm39)	missense	probably benign	0.29
R4342:Nek4	UTSW	14	30,675,863 (GRCm39)	missense	probably damaging	1.00
R5964:Nek4	UTSW	14	30,679,036 (GRCm39)	critical splice donor site	probably null
R6030:Nek4	UTSW	14	30,678,890 (GRCm39)	missense	probably damaging	1.00
R6030:Nek4	UTSW	14	30,678,890 (GRCm39)	missense	probably damaging	1.00
R6171:Nek4	UTSW	14	30,692,304 (GRCm39)	missense	probably benign	0.01
R7145:Nek4	UTSW	14	30,704,305 (GRCm39)	missense	probably damaging	0.96
R7286:Nek4	UTSW	14	30,679,249 (GRCm39)	missense	probably damaging	1.00
R8098:Nek4	UTSW	14	30,685,908 (GRCm39)	missense	probably benign	0.03
R8300:Nek4	UTSW	14	30,692,352 (GRCm39)	missense
R8397:Nek4	UTSW	14	30,692,505 (GRCm39)	missense	possibly damaging	0.77
R8481:Nek4	UTSW	14	30,685,991 (GRCm39)	missense	probably damaging	0.97
R8962:Nek4	UTSW	14	30,675,915 (GRCm39)	missense	probably damaging	1.00
R8988:Nek4	UTSW	14	30,685,924 (GRCm39)	missense
R9003:Nek4	UTSW	14	30,704,471 (GRCm39)	missense	probably benign	0.09
R9531:Nek4	UTSW	14	30,692,307 (GRCm39)	missense	probably benign	0.01
R9608:Nek4	UTSW	14	30,675,904 (GRCm39)	missense	probably damaging	0.99
R9748:Nek4	UTSW	14	30,709,114 (GRCm39)	missense	possibly damaging	0.63
R9777:Nek4	UTSW	14	30,706,401 (GRCm39)	missense	probably benign	0.16

Predicted Primers

Posted On

2014-01-15