Mutagenetix > Incidental Mutation

Incidental Mutation 'R1168:Iqsec1'

101296

Institutional Source

Beutler Lab

Gene Symbol

Iqsec1

Ensembl Gene

ENSMUSG00000034312

Gene Name

IQ motif and Sec7 domain 1

Synonyms

D6Ertd349e, cI-43, BRAG2

MMRRC Submission

039241-MU

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.211) question?

Stock #

R1168 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

90656088-90988685 bp(-) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 90689676 bp (GRCm38)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 593 (Y593C)

Ref Sequence

ENSEMBL: ENSMUSP00000148669 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000101151] [ENSMUST00000101153] [ENSMUST00000156834] [ENSMUST00000212100]

AlphaFold

Q8R0S2

Predicted Effect

probably damaging
Transcript: ENSMUST00000101151
AA Change: Y489C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000098710
Gene: ENSMUSG00000034312
AA Change: Y489C

Domain	Start	End	E-Value	Type
low complexity region	57	68	N/A	INTRINSIC
Blast:Sec7	69	369	6e-39	BLAST
low complexity region	370	389	N/A	INTRINSIC
low complexity region	396	430	N/A	INTRINSIC
low complexity region	450	481	N/A	INTRINSIC
Sec7	505	696	1.31e-95	SMART
PH	737	848	2.39e-2	SMART
low complexity region	901	914	N/A	INTRINSIC
low complexity region	963	976	N/A	INTRINSIC
low complexity region	978	1000	N/A	INTRINSIC
low complexity region	1014	1060	N/A	INTRINSIC
low complexity region	1062	1094	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000101153
AA Change: Y503C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000098712
Gene: ENSMUSG00000034312
AA Change: Y503C

Domain	Start	End	E-Value	Type
low complexity region	71	82	N/A	INTRINSIC
Blast:Sec7	83	383	4e-39	BLAST
low complexity region	384	403	N/A	INTRINSIC
low complexity region	410	444	N/A	INTRINSIC
low complexity region	464	495	N/A	INTRINSIC
Sec7	519	710	1.31e-95	SMART
PH	751	862	2.39e-2	SMART
low complexity region	915	928	N/A	INTRINSIC
low complexity region	948	957	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000133492

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000146977

Predicted Effect

probably benign
Transcript: ENSMUST00000156834

SMART Domains

Protein: ENSMUSP00000118802
Gene: ENSMUSG00000034312

Domain	Start	End	E-Value	Type
low complexity region	72	83	N/A	INTRINSIC
Blast:Sec7	84	208	5e-24	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000204662

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000205068

Predicted Effect

probably damaging
Transcript: ENSMUST00000212100
AA Change: Y593C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Coding Region Coverage

1x: 99.1%
3x: 98.1%
10x: 95.2%
20x: 88.8%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a conditional allele activated in neurons fail to exhibit mGluR- and NMDAR-mediated long term depression. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 80 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	T	C	3: 138,067,900	V950A	probably benign	Het
4930452B06Rik	T	C	14: 8,442,939	N610S	probably benign	Het
Adgrb3	A	T	1: 25,826,199	S188T	probably benign	Het
Ahr	A	T	12: 35,504,532	N529K	possibly damaging	Het
Akr1c21	A	G	13: 4,583,837	N302D	probably benign	Het
Aldh8a1	T	A	10: 21,384,631		probably null	Het
Alpk3	A	T	7: 81,103,357	K1554M	probably damaging	Het
Arhgef5	T	A	6: 43,273,396	H360Q	probably benign	Het
Cacna1a	A	G	8: 84,579,501	I1293V	probably damaging	Het
Cacna2d4	C	T	6: 119,307,286	R745W	probably damaging	Het
Cd200r4	T	A	16: 44,832,944	W72R	probably damaging	Het
Ces2e	A	T	8: 104,927,014	D28V	possibly damaging	Het
Cfap45	T	C	1: 172,545,697	Y534H	probably damaging	Het
Cfap54	A	T	10: 92,937,920	C87S	probably damaging	Het
Chmp7	C	T	14: 69,719,450	M336I	probably benign	Het
Chrna4	T	A	2: 181,034,138	M67L	possibly damaging	Het
Cts7	T	A	13: 61,353,817	N290Y	probably damaging	Het
Enpp6	A	T	8: 47,030,454	M94L	probably damaging	Het
Fam83d	C	T	2: 158,768,523	A137V	probably benign	Het
Foxd2	C	T	4: 114,907,678	A382T	possibly damaging	Het
Galnt11	T	G	5: 25,250,246	S193R	probably damaging	Het
Gapvd1	A	T	2: 34,704,469	D856E	probably damaging	Het
Gclm	T	A	3: 122,262,688	H86Q	possibly damaging	Het
Gipc2	T	C	3: 152,107,997	T220A	probably benign	Het
Gm12185	G	T	11: 48,915,355	N336K	possibly damaging	Het
Gm5431	A	T	11: 48,895,364	S61R	probably benign	Het
Gm884	T	C	11: 103,618,950		probably benign	Het
Gorasp2	C	T	2: 70,688,400	P260S	probably damaging	Het
H2-M10.6	A	G	17: 36,813,160	Q172R	probably benign	Het
Ibsp	A	G	5: 104,302,152	I6V	probably damaging	Het
Itln1	G	T	1: 171,531,551	Y61*	probably null	Het
Kif21a	G	A	15: 90,993,753	T284I	probably damaging	Het
Kif3a	G	A	11: 53,598,312	G621R	probably damaging	Het
Klb	A	G	5: 65,378,974	Y549C	probably damaging	Het
Lman1l	G	A	9: 57,608,312	R427C	probably benign	Het
Map4	T	C	9: 110,034,964	V419A	probably benign	Het
Mastl	A	T	2: 23,133,132	D526E	probably benign	Het
Mrvi1	T	C	7: 110,895,931	K429R	probably damaging	Het
Mtif2	A	G	11: 29,536,914	D308G	probably benign	Het
Ncald	A	G	15: 37,397,334	F34S	probably damaging	Het
Ndc1	A	G	4: 107,395,812	T593A	probably benign	Het
Ndst3	C	T	3: 123,606,968	V15I	probably benign	Het
Nup214	A	G	2: 32,025,301	N1166D	probably benign	Het
Olfr1031	A	T	2: 85,992,684	Y289F	probably damaging	Het
Olfr1240	G	A	2: 89,439,869	Q137*	probably null	Het
Olfr1368	A	G	13: 21,142,617	S147P	probably benign	Het
Olfr403	A	G	11: 74,196,421	H306R	probably benign	Het
Pcdhb8	T	C	18: 37,356,727	I486T	probably benign	Het
Pdzrn4	A	T	15: 92,770,271	Y768F	probably benign	Het
Pgf	A	G	12: 85,171,767	S70P	probably benign	Het
Plcl2	G	A	17: 50,607,072	A370T	possibly damaging	Het
Pnkp	T	A	7: 44,862,537	W115R	probably benign	Het
Ppp1r16a	C	T	15: 76,693,669	Q328*	probably null	Het
Prag1	A	G	8: 36,146,645	E1117G	probably damaging	Het
Prr12	T	A	7: 45,029,047	Q1919L	unknown	Het
Ret	G	T	6: 118,173,558	H666N	possibly damaging	Het
Rfwd3	C	T	8: 111,288,242	R326Q	probably damaging	Het
Robo2	C	T	16: 73,948,296	G864S	probably damaging	Het
Rpa2	T	G	4: 132,771,860	I80S	probably damaging	Het
Ryk	A	T	9: 102,898,475	D428V	probably damaging	Het
Slc29a1	A	T	17: 45,590,278	N30K	probably damaging	Het
Stbd1	A	G	5: 92,604,936	N95S	probably benign	Het
Tbc1d22a	A	G	15: 86,292,134	E212G	probably benign	Het
Tex14	A	G	11: 87,536,742	T7A	probably benign	Het
Tmc8	T	C	11: 117,792,563	V648A	possibly damaging	Het
Tmem132b	G	T	5: 125,787,019	V730F	probably damaging	Het
Tmub2	G	A	11: 102,287,370	G33D	possibly damaging	Het
Trak1	G	A	9: 121,440,679	D124N	probably damaging	Het
Ttc28	A	T	5: 111,231,111	Y1154F	probably damaging	Het
Ttn	T	C	2: 76,909,369	T3609A	probably benign	Het
Tulp2	A	G	7: 45,517,842	T99A	probably benign	Het
Ugt2a2	A	T	5: 87,465,568		probably null	Het
Ush2a	G	A	1: 188,678,411	V2419I	probably benign	Het
Vill	C	A	9: 119,070,321	P343Q	probably damaging	Het
Vmn2r66	T	A	7: 85,006,854	H318L	possibly damaging	Het
Wdr3	A	C	3: 100,142,219	N800K	probably benign	Het
Wdr93	A	G	7: 79,749,174	K19E	probably damaging	Het
Wrn	A	G	8: 33,316,408	S333P	probably damaging	Het
Zfp418	T	C	7: 7,182,501	S488P	possibly damaging	Het
Zfp804a	A	G	2: 82,256,697	E290G	probably benign	Het

Other mutations in Iqsec1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01324:Iqsec1	APN	6	90689703	missense	probably damaging	1.00
IGL01749:Iqsec1	APN	6	90680504	missense	probably benign	0.03
IGL01960:Iqsec1	APN	6	90676780	missense	probably damaging	1.00
IGL02007:Iqsec1	APN	6	90690349	missense	probably benign	0.37
IGL02045:Iqsec1	APN	6	90664069	missense	probably damaging	0.96
IGL02186:Iqsec1	APN	6	90676877	missense	probably damaging	1.00
IGL02211:Iqsec1	APN	6	90671609	missense	probably damaging	1.00
IGL02503:Iqsec1	APN	6	90668788	missense	probably damaging	1.00
IGL02506:Iqsec1	APN	6	90672075	missense	possibly damaging	0.94
IGL02554:Iqsec1	APN	6	90669345	missense	probably damaging	1.00
PIT4260001:Iqsec1	UTSW	6	90690489	missense	probably damaging	1.00
PIT4810001:Iqsec1	UTSW	6	90670491	missense	probably damaging	1.00
R0139:Iqsec1	UTSW	6	90809758	intron	probably benign
R0371:Iqsec1	UTSW	6	90670403	splice site	probably benign
R0617:Iqsec1	UTSW	6	90689970	missense	probably damaging	1.00
R0619:Iqsec1	UTSW	6	90670406	splice site	probably null
R1157:Iqsec1	UTSW	6	90669384	missense	possibly damaging	0.83
R1190:Iqsec1	UTSW	6	90689677	missense	probably damaging	1.00
R1192:Iqsec1	UTSW	6	90671976	splice site	probably benign
R1435:Iqsec1	UTSW	6	90672024	missense	probably damaging	1.00
R1449:Iqsec1	UTSW	6	90690808	nonsense	probably null
R1697:Iqsec1	UTSW	6	90809770	nonsense	probably null
R1921:Iqsec1	UTSW	6	90662895	missense	probably benign	0.00
R1958:Iqsec1	UTSW	6	90670459	missense	probably damaging	1.00
R2017:Iqsec1	UTSW	6	90689930	missense	probably benign	0.02
R2082:Iqsec1	UTSW	6	90694574	missense	probably damaging	1.00
R2372:Iqsec1	UTSW	6	90694654	missense	probably damaging	1.00
R2442:Iqsec1	UTSW	6	90689883	missense	possibly damaging	0.52
R4120:Iqsec1	UTSW	6	90662602	nonsense	probably null
R4371:Iqsec1	UTSW	6	90694606	missense	probably damaging	1.00
R4645:Iqsec1	UTSW	6	90668013	missense	probably damaging	1.00
R4864:Iqsec1	UTSW	6	90664056	missense	probably damaging	1.00
R5436:Iqsec1	UTSW	6	90845361	intron	probably benign
R5790:Iqsec1	UTSW	6	90689880	nonsense	probably null
R6007:Iqsec1	UTSW	6	90660987	nonsense	probably null
R6143:Iqsec1	UTSW	6	90809684	splice site	probably null
R6218:Iqsec1	UTSW	6	90689635	missense	probably damaging	1.00
R6972:Iqsec1	UTSW	6	90676768	missense	probably damaging	1.00
R7506:Iqsec1	UTSW	6	90662806	missense	possibly damaging	0.53
R7506:Iqsec1	UTSW	6	90667909	missense	probably damaging	1.00
R7539:Iqsec1	UTSW	6	90662891	missense	probably benign	0.00
R7921:Iqsec1	UTSW	6	90667941	missense	probably damaging	1.00
R7946:Iqsec1	UTSW	6	90690270	missense	probably damaging	1.00
R8238:Iqsec1	UTSW	6	90689930	missense	probably benign	0.01
R9536:Iqsec1	UTSW	6	90689677	missense	probably damaging	1.00
R9738:Iqsec1	UTSW	6	90694690	nonsense	probably null

Predicted Primers

Posted On

2014-01-15