Incidental Mutation 'R1186:Vmn2r6'
ID |
102096 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn2r6
|
Ensembl Gene |
ENSMUSG00000090581 |
Gene Name |
vomeronasal 2, receptor 6 |
Synonyms |
EG667069, EG620718 |
MMRRC Submission |
039258-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.198)
|
Stock # |
R1186 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
3 |
Chromosomal Location |
64444916-64472855 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to A
at 64472488 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Methionine to Leucine
at position 78
(M78L)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000135148
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000176481]
|
AlphaFold |
H3BK29 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000176481
AA Change: M78L
PolyPhen 2
Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)
|
SMART Domains |
Protein: ENSMUSP00000135148 Gene: ENSMUSG00000090581 AA Change: M78L
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
Pfam:ANF_receptor
|
88 |
505 |
9.8e-77 |
PFAM |
Pfam:Peripla_BP_6
|
142 |
331 |
3.4e-10 |
PFAM |
Pfam:NCD3G
|
547 |
600 |
5.4e-17 |
PFAM |
Pfam:7tm_3
|
633 |
867 |
3.9e-47 |
PFAM |
|
Meta Mutation Damage Score |
0.0898 |
Coding Region Coverage |
- 1x: 99.5%
- 3x: 98.5%
- 10x: 95.7%
- 20x: 90.1%
|
Validation Efficiency |
97% (69/71) |
Allele List at MGI |
|
Other mutations in this stock |
Total: 68 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
1700020N01Rik |
G |
A |
10: 21,497,551 (GRCm39) |
R64Q |
probably benign |
Het |
9530068E07Rik |
G |
A |
11: 52,293,905 (GRCm39) |
V49I |
probably benign |
Het |
A2m |
T |
C |
6: 121,638,493 (GRCm39) |
S902P |
probably benign |
Het |
Aatf |
A |
T |
11: 84,361,375 (GRCm39) |
|
probably benign |
Het |
Adamtsl1 |
A |
G |
4: 86,306,746 (GRCm39) |
T1395A |
probably benign |
Het |
Alpk2 |
T |
C |
18: 65,427,412 (GRCm39) |
|
probably null |
Het |
Ank3 |
G |
T |
10: 69,703,290 (GRCm39) |
A308S |
probably damaging |
Het |
Arap1 |
A |
G |
7: 101,053,476 (GRCm39) |
|
probably benign |
Het |
Bltp1 |
T |
C |
3: 37,050,461 (GRCm39) |
|
probably benign |
Het |
C4b |
T |
C |
17: 34,955,283 (GRCm39) |
D769G |
possibly damaging |
Het |
Cep350 |
A |
G |
1: 155,751,122 (GRCm39) |
S2017P |
probably damaging |
Het |
Cfap54 |
T |
A |
10: 92,711,856 (GRCm39) |
I2704F |
unknown |
Het |
Crip2 |
G |
A |
12: 113,108,579 (GRCm39) |
|
probably benign |
Het |
Cyp4f14 |
T |
C |
17: 33,135,760 (GRCm39) |
I34V |
probably benign |
Het |
Dcstamp |
A |
G |
15: 39,618,025 (GRCm39) |
|
probably null |
Het |
Ddx5 |
T |
C |
11: 106,674,805 (GRCm39) |
|
probably null |
Het |
Dnah2 |
A |
T |
11: 69,406,526 (GRCm39) |
L572Q |
probably damaging |
Het |
Espl1 |
G |
A |
15: 102,212,474 (GRCm39) |
A527T |
probably benign |
Het |
Fam83d |
A |
G |
2: 158,627,094 (GRCm39) |
D261G |
probably damaging |
Het |
Fbxo34 |
T |
C |
14: 47,768,043 (GRCm39) |
F468L |
probably damaging |
Het |
Gabarapl1 |
A |
T |
6: 129,510,368 (GRCm39) |
|
probably benign |
Het |
Galnt17 |
G |
T |
5: 131,140,580 (GRCm39) |
T179K |
probably damaging |
Het |
Gm6899 |
C |
T |
11: 26,543,685 (GRCm39) |
|
probably benign |
Het |
Helz2 |
T |
A |
2: 180,872,921 (GRCm39) |
R2433W |
probably damaging |
Het |
Hivep3 |
T |
C |
4: 119,671,920 (GRCm39) |
|
probably benign |
Het |
Hsh2d |
G |
A |
8: 72,954,304 (GRCm39) |
D229N |
probably benign |
Het |
Ica1 |
A |
G |
6: 8,672,326 (GRCm39) |
L225P |
probably damaging |
Het |
Inpp5f |
T |
C |
7: 128,296,307 (GRCm39) |
I195T |
probably benign |
Het |
Isyna1 |
C |
A |
8: 71,047,851 (GRCm39) |
N115K |
probably benign |
Het |
Ly6g6e |
T |
C |
17: 35,296,984 (GRCm39) |
F75S |
probably benign |
Het |
Ly96 |
A |
G |
1: 16,771,118 (GRCm39) |
D101G |
possibly damaging |
Het |
Mapk9 |
A |
G |
11: 49,769,096 (GRCm39) |
T243A |
probably damaging |
Het |
Mcc |
A |
G |
18: 44,892,470 (GRCm39) |
V48A |
probably benign |
Het |
Mcpt2 |
C |
T |
14: 56,281,402 (GRCm39) |
|
probably benign |
Het |
Med24 |
T |
C |
11: 98,608,583 (GRCm39) |
|
probably benign |
Het |
Mtbp |
G |
A |
15: 55,428,067 (GRCm39) |
G162S |
probably null |
Het |
Mtfr2 |
G |
A |
10: 20,228,598 (GRCm39) |
C48Y |
probably benign |
Het |
Naip2 |
AGGG |
AGG |
13: 100,298,545 (GRCm39) |
|
probably null |
Het |
Naip2 |
C |
T |
13: 100,298,489 (GRCm39) |
A516T |
possibly damaging |
Het |
Ncoa4-ps |
A |
C |
12: 119,225,206 (GRCm39) |
|
noncoding transcript |
Het |
Nup107 |
A |
C |
10: 117,613,051 (GRCm39) |
Y292* |
probably null |
Het |
Nwd2 |
C |
T |
5: 63,807,367 (GRCm39) |
|
probably benign |
Het |
Nxpe4 |
A |
C |
9: 48,304,692 (GRCm39) |
N260H |
probably benign |
Het |
Ofcc1 |
C |
T |
13: 40,362,305 (GRCm39) |
G206R |
probably benign |
Het |
Or6z7 |
T |
C |
7: 6,483,541 (GRCm39) |
I205V |
probably benign |
Het |
Or8b42 |
T |
C |
9: 38,342,397 (GRCm39) |
V273A |
possibly damaging |
Het |
Or8b47 |
T |
C |
9: 38,435,453 (GRCm39) |
S142P |
probably damaging |
Het |
Or8k37 |
A |
T |
2: 86,469,807 (GRCm39) |
L82M |
probably damaging |
Het |
P2rx7 |
T |
C |
5: 122,808,514 (GRCm39) |
Y299H |
probably damaging |
Het |
Per3 |
T |
A |
4: 151,110,595 (GRCm39) |
E401V |
probably damaging |
Het |
Rbm34 |
C |
A |
8: 127,692,197 (GRCm39) |
E182* |
probably null |
Het |
Sdk2 |
C |
T |
11: 113,729,472 (GRCm39) |
|
silent |
Het |
Senp2 |
T |
C |
16: 21,830,254 (GRCm39) |
S38P |
probably damaging |
Het |
Slc36a2 |
A |
T |
11: 55,055,057 (GRCm39) |
|
probably null |
Het |
Spred1 |
A |
T |
2: 117,008,178 (GRCm39) |
R361S |
possibly damaging |
Het |
Spry2 |
A |
G |
14: 106,130,341 (GRCm39) |
C282R |
probably damaging |
Het |
Srp54b |
T |
C |
12: 55,302,313 (GRCm39) |
|
probably benign |
Het |
Taar8c |
G |
C |
10: 23,977,463 (GRCm39) |
Y116* |
probably null |
Het |
Tchh |
C |
G |
3: 93,355,353 (GRCm39) |
R1598G |
unknown |
Het |
Tex15 |
A |
G |
8: 34,061,661 (GRCm39) |
M364V |
probably benign |
Het |
Ttbk1 |
T |
C |
17: 46,778,057 (GRCm39) |
R662G |
probably damaging |
Het |
Ttc5 |
G |
A |
14: 51,004,683 (GRCm39) |
Q374* |
probably null |
Het |
Usp46 |
C |
T |
5: 74,162,783 (GRCm39) |
A312T |
probably benign |
Het |
Vmn1r176 |
A |
T |
7: 23,535,051 (GRCm39) |
L34Q |
probably damaging |
Het |
Vmn1r178 |
A |
T |
7: 23,593,317 (GRCm39) |
R122* |
probably null |
Het |
Zfp407 |
A |
T |
18: 84,227,573 (GRCm39) |
I2012N |
probably benign |
Het |
Zfp980 |
G |
A |
4: 145,428,653 (GRCm39) |
G461S |
probably benign |
Het |
Zfyve26 |
G |
A |
12: 79,310,723 (GRCm39) |
L161F |
probably damaging |
Het |
|
Other mutations in Vmn2r6 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01547:Vmn2r6
|
APN |
3 |
64,445,525 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01968:Vmn2r6
|
APN |
3 |
64,463,766 (GRCm39) |
missense |
possibly damaging |
0.94 |
IGL02009:Vmn2r6
|
APN |
3 |
64,445,323 (GRCm39) |
missense |
possibly damaging |
0.61 |
IGL02039:Vmn2r6
|
APN |
3 |
64,463,610 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02652:Vmn2r6
|
APN |
3 |
64,463,749 (GRCm39) |
missense |
probably benign |
0.24 |
IGL02737:Vmn2r6
|
APN |
3 |
64,463,911 (GRCm39) |
missense |
possibly damaging |
0.55 |
IGL02808:Vmn2r6
|
APN |
3 |
64,463,917 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03066:Vmn2r6
|
APN |
3 |
64,472,574 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL03331:Vmn2r6
|
APN |
3 |
64,445,428 (GRCm39) |
missense |
probably damaging |
1.00 |
BB010:Vmn2r6
|
UTSW |
3 |
64,467,224 (GRCm39) |
missense |
probably benign |
0.02 |
BB020:Vmn2r6
|
UTSW |
3 |
64,467,224 (GRCm39) |
missense |
probably benign |
0.02 |
R0010:Vmn2r6
|
UTSW |
3 |
64,466,966 (GRCm39) |
nonsense |
probably null |
|
R0206:Vmn2r6
|
UTSW |
3 |
64,447,333 (GRCm39) |
missense |
probably benign |
|
R0206:Vmn2r6
|
UTSW |
3 |
64,447,333 (GRCm39) |
missense |
probably benign |
|
R0208:Vmn2r6
|
UTSW |
3 |
64,447,333 (GRCm39) |
missense |
probably benign |
|
R0427:Vmn2r6
|
UTSW |
3 |
64,467,008 (GRCm39) |
missense |
probably damaging |
1.00 |
R0466:Vmn2r6
|
UTSW |
3 |
64,463,723 (GRCm39) |
missense |
probably damaging |
1.00 |
R1018:Vmn2r6
|
UTSW |
3 |
64,464,261 (GRCm39) |
missense |
probably benign |
0.00 |
R1104:Vmn2r6
|
UTSW |
3 |
64,445,487 (GRCm39) |
missense |
possibly damaging |
0.93 |
R1245:Vmn2r6
|
UTSW |
3 |
64,464,211 (GRCm39) |
missense |
possibly damaging |
0.53 |
R1295:Vmn2r6
|
UTSW |
3 |
64,445,694 (GRCm39) |
missense |
probably damaging |
1.00 |
R1473:Vmn2r6
|
UTSW |
3 |
64,445,579 (GRCm39) |
nonsense |
probably null |
|
R1498:Vmn2r6
|
UTSW |
3 |
64,463,890 (GRCm39) |
missense |
probably damaging |
1.00 |
R1925:Vmn2r6
|
UTSW |
3 |
64,463,698 (GRCm39) |
missense |
possibly damaging |
0.87 |
R2044:Vmn2r6
|
UTSW |
3 |
64,445,262 (GRCm39) |
missense |
probably damaging |
0.96 |
R2069:Vmn2r6
|
UTSW |
3 |
64,463,519 (GRCm39) |
missense |
possibly damaging |
0.89 |
R2253:Vmn2r6
|
UTSW |
3 |
64,467,139 (GRCm39) |
missense |
probably damaging |
1.00 |
R2261:Vmn2r6
|
UTSW |
3 |
64,464,090 (GRCm39) |
missense |
probably benign |
0.24 |
R2262:Vmn2r6
|
UTSW |
3 |
64,464,090 (GRCm39) |
missense |
probably benign |
0.24 |
R2350:Vmn2r6
|
UTSW |
3 |
64,463,773 (GRCm39) |
missense |
probably benign |
0.01 |
R2680:Vmn2r6
|
UTSW |
3 |
64,445,707 (GRCm39) |
missense |
possibly damaging |
0.91 |
R2846:Vmn2r6
|
UTSW |
3 |
64,464,211 (GRCm39) |
missense |
possibly damaging |
0.53 |
R2860:Vmn2r6
|
UTSW |
3 |
64,454,760 (GRCm39) |
missense |
probably benign |
0.00 |
R2861:Vmn2r6
|
UTSW |
3 |
64,454,760 (GRCm39) |
missense |
probably benign |
0.00 |
R3766:Vmn2r6
|
UTSW |
3 |
64,463,929 (GRCm39) |
missense |
probably benign |
0.19 |
R3870:Vmn2r6
|
UTSW |
3 |
64,464,042 (GRCm39) |
missense |
probably damaging |
0.96 |
R4018:Vmn2r6
|
UTSW |
3 |
64,463,893 (GRCm39) |
missense |
probably benign |
0.05 |
R4024:Vmn2r6
|
UTSW |
3 |
64,445,671 (GRCm39) |
missense |
possibly damaging |
0.73 |
R4026:Vmn2r6
|
UTSW |
3 |
64,445,671 (GRCm39) |
missense |
possibly damaging |
0.73 |
R4227:Vmn2r6
|
UTSW |
3 |
64,445,369 (GRCm39) |
missense |
probably damaging |
0.99 |
R4526:Vmn2r6
|
UTSW |
3 |
64,445,145 (GRCm39) |
missense |
probably benign |
0.32 |
R4570:Vmn2r6
|
UTSW |
3 |
64,467,068 (GRCm39) |
missense |
probably benign |
0.31 |
R4894:Vmn2r6
|
UTSW |
3 |
64,454,829 (GRCm39) |
missense |
probably benign |
|
R4934:Vmn2r6
|
UTSW |
3 |
64,463,766 (GRCm39) |
missense |
probably damaging |
0.99 |
R5057:Vmn2r6
|
UTSW |
3 |
64,445,207 (GRCm39) |
missense |
probably damaging |
1.00 |
R5059:Vmn2r6
|
UTSW |
3 |
64,445,044 (GRCm39) |
missense |
possibly damaging |
0.89 |
R5148:Vmn2r6
|
UTSW |
3 |
64,464,015 (GRCm39) |
missense |
probably damaging |
0.99 |
R5155:Vmn2r6
|
UTSW |
3 |
64,445,935 (GRCm39) |
missense |
probably benign |
0.44 |
R5179:Vmn2r6
|
UTSW |
3 |
64,445,411 (GRCm39) |
missense |
probably benign |
0.00 |
R5256:Vmn2r6
|
UTSW |
3 |
64,464,263 (GRCm39) |
missense |
probably benign |
0.33 |
R5861:Vmn2r6
|
UTSW |
3 |
64,463,454 (GRCm39) |
missense |
probably benign |
0.00 |
R5950:Vmn2r6
|
UTSW |
3 |
64,472,652 (GRCm39) |
missense |
probably benign |
0.05 |
R6081:Vmn2r6
|
UTSW |
3 |
64,463,953 (GRCm39) |
missense |
probably benign |
0.25 |
R6173:Vmn2r6
|
UTSW |
3 |
64,467,176 (GRCm39) |
missense |
probably damaging |
1.00 |
R6190:Vmn2r6
|
UTSW |
3 |
64,445,424 (GRCm39) |
missense |
probably benign |
0.04 |
R6240:Vmn2r6
|
UTSW |
3 |
64,464,226 (GRCm39) |
missense |
probably damaging |
1.00 |
R6433:Vmn2r6
|
UTSW |
3 |
64,454,801 (GRCm39) |
nonsense |
probably null |
|
R6645:Vmn2r6
|
UTSW |
3 |
64,464,297 (GRCm39) |
missense |
probably damaging |
1.00 |
R6791:Vmn2r6
|
UTSW |
3 |
64,445,580 (GRCm39) |
missense |
probably damaging |
1.00 |
R7265:Vmn2r6
|
UTSW |
3 |
64,464,195 (GRCm39) |
missense |
probably benign |
0.00 |
R7503:Vmn2r6
|
UTSW |
3 |
64,447,372 (GRCm39) |
nonsense |
probably null |
|
R7562:Vmn2r6
|
UTSW |
3 |
64,463,941 (GRCm39) |
missense |
probably benign |
0.00 |
R7584:Vmn2r6
|
UTSW |
3 |
64,472,683 (GRCm39) |
missense |
probably benign |
0.07 |
R7611:Vmn2r6
|
UTSW |
3 |
64,472,563 (GRCm39) |
missense |
probably damaging |
0.98 |
R7759:Vmn2r6
|
UTSW |
3 |
64,463,991 (GRCm39) |
missense |
probably damaging |
1.00 |
R7834:Vmn2r6
|
UTSW |
3 |
64,445,443 (GRCm39) |
missense |
probably damaging |
1.00 |
R7933:Vmn2r6
|
UTSW |
3 |
64,467,224 (GRCm39) |
missense |
probably benign |
0.02 |
R7982:Vmn2r6
|
UTSW |
3 |
64,467,241 (GRCm39) |
missense |
probably damaging |
1.00 |
R8024:Vmn2r6
|
UTSW |
3 |
64,467,245 (GRCm39) |
missense |
probably benign |
0.40 |
R8074:Vmn2r6
|
UTSW |
3 |
64,455,064 (GRCm39) |
intron |
probably benign |
|
R8169:Vmn2r6
|
UTSW |
3 |
64,447,310 (GRCm39) |
missense |
probably benign |
0.01 |
R8337:Vmn2r6
|
UTSW |
3 |
64,463,526 (GRCm39) |
nonsense |
probably null |
|
R8736:Vmn2r6
|
UTSW |
3 |
64,467,221 (GRCm39) |
missense |
probably damaging |
1.00 |
R8962:Vmn2r6
|
UTSW |
3 |
64,463,576 (GRCm39) |
missense |
probably damaging |
1.00 |
R9139:Vmn2r6
|
UTSW |
3 |
64,464,277 (GRCm39) |
missense |
probably benign |
0.12 |
R9206:Vmn2r6
|
UTSW |
3 |
64,467,032 (GRCm39) |
missense |
probably damaging |
0.97 |
R9295:Vmn2r6
|
UTSW |
3 |
64,463,484 (GRCm39) |
missense |
probably benign |
0.00 |
R9332:Vmn2r6
|
UTSW |
3 |
64,454,671 (GRCm39) |
missense |
probably benign |
0.01 |
R9616:Vmn2r6
|
UTSW |
3 |
64,445,724 (GRCm39) |
missense |
probably damaging |
1.00 |
R9663:Vmn2r6
|
UTSW |
3 |
64,463,549 (GRCm39) |
missense |
possibly damaging |
0.90 |
R9685:Vmn2r6
|
UTSW |
3 |
64,464,081 (GRCm39) |
missense |
probably benign |
0.19 |
X0020:Vmn2r6
|
UTSW |
3 |
64,445,871 (GRCm39) |
missense |
probably benign |
|
X0066:Vmn2r6
|
UTSW |
3 |
64,454,799 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1176:Vmn2r6
|
UTSW |
3 |
64,463,746 (GRCm39) |
missense |
probably damaging |
0.98 |
|
Predicted Primers |
PCR Primer
(F):5'- TTTCACAAGGAGCTGCCACAGG -3'
(R):5'- AGCTGCCAGTGCCAAACAAGAG -3'
Sequencing Primer
(F):5'- TGCCACAGGCTTCTGAGATG -3'
(R):5'- CAAGTGACTGCAACATCTGTGTC -3'
|
Posted On |
2014-01-15 |