Mutagenetix > Incidental Mutations

Incidental Mutation 'IGL01669:Cylc2'

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103419

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Cylc2

Ensembl Gene

ENSMUSG00000039555

Gene Name

cylicin, basic protein of sperm head cytoskeleton 2

Synonyms

4930488P18Rik

Accession Numbers

Is this an essential gene?

Probably non essential (E-score: 0.051) question?

Stock #

IGL01669

Quality Score

Status

Chromosome

Chromosomal Location

51216678-51230272 bp(+) (GRCm38)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 51228360 bp

Zygosity

Heterozygous

Amino Acid Change

Threonine to Alanine at position 144 (T144A)

Ref Sequence

ENSEMBL: ENSMUSP00000125758 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000041392] [ENSMUST00000166749]

Predicted Effect

probably benign
Transcript: ENSMUST00000041392
AA Change: T144A

PolyPhen 2 Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000039750
Gene: ENSMUSG00000039555
AA Change: T144A

Domain	Start	End	E-Value	Type
Pfam:Cylicin_N	7	115	1.1e-43	PFAM
low complexity region	122	131	N/A	INTRINSIC
low complexity region	174	220	N/A	INTRINSIC
low complexity region	224	245	N/A	INTRINSIC
low complexity region	249	272	N/A	INTRINSIC
low complexity region	278	300	N/A	INTRINSIC
low complexity region	312	329	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000156384

Predicted Effect

probably benign
Transcript: ENSMUST00000166749
AA Change: T144A

PolyPhen 2 Score 0.010 (Sensitivity: 0.96; Specificity: 0.77)

SMART Domains

Protein: ENSMUSP00000125758
Gene: ENSMUSG00000039555
AA Change: T144A

Domain	Start	End	E-Value	Type
Pfam:Cylicin_N	8	113	4.6e-46	PFAM
low complexity region	122	131	N/A	INTRINSIC
low complexity region	174	220	N/A	INTRINSIC
low complexity region	224	245	N/A	INTRINSIC
low complexity region	249	272	N/A	INTRINSIC
low complexity region	278	300	N/A	INTRINSIC
low complexity region	312	329	N/A	INTRINSIC
low complexity region	338	420	N/A	INTRINSIC

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 40 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsl4	G	T	X: 142,343,188	D313E	probably damaging	Het
Aifm3	A	C	16: 17,503,541	K453T	probably benign	Het
Anks1b	T	C	10: 90,897,238		probably benign	Het
Arfgef1	T	C	1: 10,159,615	D1287G	probably damaging	Het
Bcl3	G	A	7: 19,812,491	Q140*	probably null	Het
Bnipl	T	G	3: 95,242,734	R316S	probably damaging	Het
Cacna1i	T	A	15: 80,391,757	H1916Q	probably benign	Het
Ccdc171	C	T	4: 83,681,195	A749V	probably damaging	Het
Ceacam18	G	A	7: 43,645,515	G333E	probably damaging	Het
Cul7	G	T	17: 46,658,715	M969I	possibly damaging	Het
Cyp2c50	A	T	19: 40,098,051	H294L	probably damaging	Het
D430041D05Rik	T	C	2: 104,254,961	K1081R	probably damaging	Het
D930020B18Rik	A	G	10: 121,683,961	K456R	probably benign	Het
Drd2	A	G	9: 49,402,089	N186S	possibly damaging	Het
Fanci	A	T	7: 79,449,177	E1306D	probably benign	Het
Fbxl21	T	A	13: 56,527,709		probably benign	Het
Galk2	T	A	2: 125,887,887	Y63N	probably damaging	Het
Git2	T	C	5: 114,767,105	D97G	probably damaging	Het
Gm8258	T	A	5: 104,776,074		noncoding transcript	Het
Irf4	G	T	13: 30,757,471	S270I	probably damaging	Het
Itgb3	C	A	11: 104,633,390		probably benign	Het
Itpr2	A	C	6: 146,180,229	I2299R	probably damaging	Het
Lig4	T	C	8: 9,973,673	I36V	probably benign	Het
Nedd9	A	G	13: 41,338,635	V133A	probably damaging	Het
Nup133	A	C	8: 123,939,130	Y185*	probably null	Het
Olfr1162	T	C	2: 88,049,784	Y280C	possibly damaging	Het
Olfr623	A	T	7: 103,660,987	F88I	probably benign	Het
Olfr788	A	G	10: 129,473,211	H173R	probably damaging	Het
Pgbd5	T	A	8: 124,374,399	T373S	possibly damaging	Het
Ppp1r8	T	C	4: 132,828,169	E246G	probably benign	Het
Rmnd5b	C	T	11: 51,627,900	V89M	probably damaging	Het
Rnf123	T	C	9: 108,058,356	I969V	probably damaging	Het
Ror2	A	G	13: 53,111,088	I656T	probably damaging	Het
Sgsm1	T	C	5: 113,263,490	E503G	probably benign	Het
Smgc	T	A	15: 91,860,684	S381T	possibly damaging	Het
Tlr4	T	G	4: 66,841,267	F766V	possibly damaging	Het
Tnc	T	C	4: 64,000,701	T1162A	probably damaging	Het
Usp39	A	G	6: 72,338,493	V156A	probably damaging	Het
Zdhhc5	A	G	2: 84,691,194	Y352H	probably damaging	Het
Zfp646	A	G	7: 127,878,965	T105A	probably benign	Het

Other mutations in Cylc2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00476:Cylc2	APN	4	51228157	missense	probably damaging	1.00
IGL02662:Cylc2	APN	4	51216698	utr 5 prime	probably benign
R0277:Cylc2	UTSW	4	51228477	missense	unknown
R0323:Cylc2	UTSW	4	51228477	missense	unknown
R0968:Cylc2	UTSW	4	51216706	start codon destroyed	probably null	0.50
R1395:Cylc2	UTSW	4	51228366	missense	possibly damaging	0.53
R1639:Cylc2	UTSW	4	51228310	missense	probably benign	0.23
R1643:Cylc2	UTSW	4	51225173	missense	probably benign	0.38
R2829:Cylc2	UTSW	4	51229798	missense	unknown
R4464:Cylc2	UTSW	4	51229651	missense	unknown
R4467:Cylc2	UTSW	4	51229651	missense	unknown
R4496:Cylc2	UTSW	4	51229651	missense	unknown
R4505:Cylc2	UTSW	4	51229651	missense	unknown
R4514:Cylc2	UTSW	4	51229651	missense	unknown
R4546:Cylc2	UTSW	4	51229651	missense	unknown
R4546:Cylc2	UTSW	4	51229840	missense	unknown
R4654:Cylc2	UTSW	4	51228279	missense	probably benign	0.00
R4949:Cylc2	UTSW	4	51229804	missense	unknown
R5141:Cylc2	UTSW	4	51228587	intron	probably benign
R5176:Cylc2	UTSW	4	51228587	intron	probably benign
R5177:Cylc2	UTSW	4	51228587	intron	probably benign
R5179:Cylc2	UTSW	4	51228587	intron	probably benign
R7469:Cylc2	UTSW	4	51227970	splice site	probably null
R7508:Cylc2	UTSW	4	51229256	splice site	probably null
R7699:Cylc2	UTSW	4	51229335	missense	unknown

Posted On

2014-01-21