Incidental Mutation 'IGL01696:Slc1a3'
ID104280
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Slc1a3
Ensembl Gene ENSMUSG00000005360
Gene Namesolute carrier family 1 (glial high affinity glutamate transporter), member 3
SynonymsGLAST, MGluT1, Gmt1, B430115D02Rik, Eaat1
Accession Numbers
Is this an essential gene? Non essential (E-score: 0.000) question?
Stock #IGL01696
Quality Score
Status
Chromosome15
Chromosomal Location8634124-8710764 bp(-) (GRCm38)
Type of Mutationmissense
DNA Base Change (assembly) T to C at 8642338 bp
ZygosityHeterozygous
Amino Acid Change Glutamic Acid to Glycine at position 378 (E378G)
Ref Sequence ENSEMBL: ENSMUSP00000005493 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000005493]
Predicted Effect probably benign
Transcript: ENSMUST00000005493
AA Change: E378G

PolyPhen 2 Score 0.190 (Sensitivity: 0.92; Specificity: 0.87)
SMART Domains Protein: ENSMUSP00000005493
Gene: ENSMUSG00000005360
AA Change: E378G

DomainStartEndE-ValueType
Pfam:SDF 50 497 8.5e-135 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000125997
Predicted Effect noncoding transcript
Transcript: ENSMUST00000128879
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of a member of a high affinity glutamate transporter family. This gene functions in the termination of excitatory neurotransmission in central nervous system. Mutations are associated with episodic ataxia, Type 6. Alternative splicing results in multiple transcript variants.[provided by RefSeq, Feb 2014]
PHENOTYPE: Mice homozygous for disruptions in this gene display no abnormalities with respect to appearance or survival but do display functional abnormalities related to the central nervous system. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 26 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam1b A G 5: 121,500,793 S730P possibly damaging Het
Ano3 T G 2: 110,667,737 D753A probably damaging Het
Apoc4 C T 7: 19,678,184 C113Y probably damaging Het
Arhgdia A G 11: 120,580,376 probably benign Het
Ccdc129 A G 6: 55,897,695 H210R probably benign Het
Ccdc171 A G 4: 83,655,578 T459A possibly damaging Het
Ccdc190 A C 1: 169,933,824 K165T probably damaging Het
Dopey2 T C 16: 93,770,240 V1185A probably benign Het
Ednrb C T 14: 103,823,189 V223I probably benign Het
Ermp1 T C 19: 29,646,138 I151V possibly damaging Het
Gm15737 T A 6: 92,879,821 probably benign Het
Herc3 A G 6: 58,860,386 H348R possibly damaging Het
Immp2l G T 12: 41,628,807 A95S probably damaging Het
Invs A G 4: 48,425,997 Y928C probably damaging Het
Olfr365 A G 2: 37,201,511 E90G probably benign Het
Olfr829 A T 9: 18,857,056 I135L probably benign Het
Olfr893 A C 9: 38,209,049 probably benign Het
Pkd1l2 G T 8: 117,056,387 S731R probably benign Het
Pkhd1l1 T C 15: 44,529,351 M1694T possibly damaging Het
Pld2 C A 11: 70,542,780 R212S probably damaging Het
Plekhg6 A G 6: 125,378,830 F4L probably benign Het
Rps6ka6 T C X: 111,407,517 Q634R probably benign Het
Tmem184b T C 15: 79,378,529 T43A possibly damaging Het
Ttn A G 2: 76,746,788 V24587A probably damaging Het
Uba7 T A 9: 107,977,348 L262Q probably damaging Het
Zfp954 G T 7: 7,115,398 H382Q probably damaging Het
Other mutations in Slc1a3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01133:Slc1a3 APN 15 8645687 missense probably damaging 1.00
IGL01133:Slc1a3 APN 15 8650993 missense probably damaging 1.00
IGL03108:Slc1a3 APN 15 8639078 missense probably damaging 1.00
R0128:Slc1a3 UTSW 15 8636209 missense probably benign 0.07
R0206:Slc1a3 UTSW 15 8708556 splice site probably benign
R0312:Slc1a3 UTSW 15 8636237 missense probably benign 0.00
R0385:Slc1a3 UTSW 15 8639135 missense probably damaging 1.00
R0538:Slc1a3 UTSW 15 8650922 missense probably benign
R0579:Slc1a3 UTSW 15 8688309 missense probably damaging 0.98
R1799:Slc1a3 UTSW 15 8688404 missense probably damaging 1.00
R2029:Slc1a3 UTSW 15 8645669 missense probably benign 0.29
R3236:Slc1a3 UTSW 15 8639123 missense probably damaging 0.98
R4494:Slc1a3 UTSW 15 8639095 missense probably damaging 1.00
R5010:Slc1a3 UTSW 15 8650846 splice site probably benign
R5154:Slc1a3 UTSW 15 8642949 missense probably benign 0.09
R5226:Slc1a3 UTSW 15 8642225 missense probably damaging 1.00
R5538:Slc1a3 UTSW 15 8645704 missense probably damaging 0.99
R6049:Slc1a3 UTSW 15 8645693 missense probably damaging 1.00
R6072:Slc1a3 UTSW 15 8708568 missense probably damaging 0.99
R6496:Slc1a3 UTSW 15 8649581 missense probably benign 0.01
R7015:Slc1a3 UTSW 15 8649568 missense probably damaging 1.00
R7168:Slc1a3 UTSW 15 8645902 missense possibly damaging 0.79
R7255:Slc1a3 UTSW 15 8642999 missense possibly damaging 0.90
R7476:Slc1a3 UTSW 15 8643084 missense probably damaging 0.99
R7732:Slc1a3 UTSW 15 8650988 missense probably benign 0.09
Posted On2014-01-21