Incidental Mutation 'IGL01719:Lpar5'
ID |
105025 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Lpar5
|
Ensembl Gene |
ENSMUSG00000067714 |
Gene Name |
lysophosphatidic acid receptor 5 |
Synonyms |
Gpr92, LOC381810, GPR93, LPA5 |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.074)
|
Stock # |
IGL01719
|
Quality Score |
|
Status
|
|
Chromosome |
6 |
Chromosomal Location |
125044883-125059435 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
T to G
at 125058969 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Valine to Glycine
at position 230
(V230G)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000132511
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000088292]
[ENSMUST00000140346]
[ENSMUST00000171989]
|
AlphaFold |
no structure available at present |
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000088292
AA Change: V230G
PolyPhen 2
Score 0.937 (Sensitivity: 0.80; Specificity: 0.94)
|
SMART Domains |
Protein: ENSMUSP00000085630 Gene: ENSMUSG00000067714 AA Change: V230G
Domain | Start | End | E-Value | Type |
low complexity region
|
15 |
27 |
N/A |
INTRINSIC |
Pfam:7tm_1
|
55 |
313 |
7.4e-40 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000140346
|
SMART Domains |
Protein: ENSMUSP00000119904 Gene: ENSMUSG00000067714
Domain | Start | End | E-Value | Type |
low complexity region
|
15 |
27 |
N/A |
INTRINSIC |
Pfam:7tm_1
|
55 |
164 |
1.5e-30 |
PFAM |
|
Predicted Effect |
possibly damaging
Transcript: ENSMUST00000171989
AA Change: V230G
PolyPhen 2
Score 0.937 (Sensitivity: 0.80; Specificity: 0.94)
|
SMART Domains |
Protein: ENSMUSP00000132511 Gene: ENSMUSG00000067714 AA Change: V230G
Domain | Start | End | E-Value | Type |
low complexity region
|
15 |
27 |
N/A |
INTRINSIC |
Pfam:7tm_1
|
55 |
313 |
1.1e-48 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000203956
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the rhodopsin class of G protein-coupled transmembrane receptors. This protein transmits extracellular signals from lysophosphatidic acid to cells through heterotrimeric G proteins and mediates numerous cellular processes. Many G protein receptors serve as targets for pharmaceutical drugs. Transcript variants of this gene have been described.[provided by RefSeq, Dec 2008] PHENOTYPE: Mice homozygous for a knock-out allele exhibit resistance to neuropathic pain and myelin sheath alterations. Mice homozygous for a different targeted allele exhibit decreased nociception sensitivity, decreased anxiety-related response and enhanced coordination and spatial learning. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 25 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Alms1 |
G |
A |
6: 85,605,076 (GRCm39) |
R1773Q |
probably benign |
Het |
Ankk1 |
A |
G |
9: 49,328,081 (GRCm39) |
V366A |
probably benign |
Het |
Antxr2 |
C |
T |
5: 98,096,132 (GRCm39) |
R384Q |
possibly damaging |
Het |
Cdh13 |
G |
A |
8: 119,401,927 (GRCm39) |
V110M |
probably benign |
Het |
Ctnna2 |
T |
A |
6: 77,613,958 (GRCm39) |
K198* |
probably null |
Het |
Dpf3 |
C |
A |
12: 83,341,207 (GRCm39) |
S223I |
probably damaging |
Het |
Galnt5 |
A |
G |
2: 57,888,555 (GRCm39) |
R52G |
probably damaging |
Het |
Gm4787 |
G |
A |
12: 81,423,948 (GRCm39) |
R737C |
possibly damaging |
Het |
Grin2b |
T |
A |
6: 135,710,379 (GRCm39) |
I1056F |
probably damaging |
Het |
H2al2a |
T |
A |
2: 18,001,446 (GRCm39) |
H80L |
probably damaging |
Het |
Hipk3 |
T |
C |
2: 104,267,434 (GRCm39) |
H601R |
possibly damaging |
Het |
Hivep2 |
T |
C |
10: 14,006,267 (GRCm39) |
L955P |
probably damaging |
Het |
Jund |
C |
T |
8: 71,151,885 (GRCm39) |
A60V |
possibly damaging |
Het |
Klhdc7a |
A |
G |
4: 139,693,861 (GRCm39) |
L362P |
probably damaging |
Het |
Lrba |
C |
T |
3: 86,234,903 (GRCm39) |
|
probably benign |
Het |
Or11g24 |
T |
C |
14: 50,662,018 (GRCm39) |
F14S |
possibly damaging |
Het |
Pcdhb5 |
T |
G |
18: 37,454,075 (GRCm39) |
S152A |
probably benign |
Het |
Plekha5 |
A |
C |
6: 140,515,855 (GRCm39) |
E702D |
probably damaging |
Het |
Ppt1 |
A |
G |
4: 122,737,860 (GRCm39) |
Y66C |
probably damaging |
Het |
S1pr5 |
C |
A |
9: 21,155,250 (GRCm39) |
R392L |
probably benign |
Het |
Slc37a2 |
T |
C |
9: 37,145,474 (GRCm39) |
T410A |
probably damaging |
Het |
St18 |
A |
G |
1: 6,916,020 (GRCm39) |
|
probably benign |
Het |
Taar7d |
T |
A |
10: 23,903,865 (GRCm39) |
M249K |
probably benign |
Het |
Vwa5b2 |
T |
C |
16: 20,416,183 (GRCm39) |
|
probably null |
Het |
Zan |
T |
A |
5: 137,393,916 (GRCm39) |
T4512S |
unknown |
Het |
|
Other mutations in Lpar5 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01830:Lpar5
|
APN |
6 |
125,058,785 (GRCm39) |
missense |
probably benign |
0.01 |
IGL01975:Lpar5
|
APN |
6 |
125,058,750 (GRCm39) |
missense |
probably damaging |
0.99 |
IGL02021:Lpar5
|
APN |
6 |
125,058,955 (GRCm39) |
nonsense |
probably null |
|
IGL02718:Lpar5
|
APN |
6 |
125,059,207 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03027:Lpar5
|
APN |
6 |
125,059,203 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL03300:Lpar5
|
APN |
6 |
125,059,203 (GRCm39) |
missense |
probably damaging |
1.00 |
F5770:Lpar5
|
UTSW |
6 |
125,058,690 (GRCm39) |
missense |
possibly damaging |
0.88 |
R0633:Lpar5
|
UTSW |
6 |
125,058,954 (GRCm39) |
missense |
probably benign |
0.25 |
R1639:Lpar5
|
UTSW |
6 |
125,058,564 (GRCm39) |
missense |
probably damaging |
1.00 |
R1822:Lpar5
|
UTSW |
6 |
125,058,378 (GRCm39) |
missense |
possibly damaging |
0.76 |
R2227:Lpar5
|
UTSW |
6 |
125,058,098 (GRCm39) |
critical splice acceptor site |
probably null |
|
R4019:Lpar5
|
UTSW |
6 |
125,058,638 (GRCm39) |
missense |
probably damaging |
1.00 |
R4288:Lpar5
|
UTSW |
6 |
125,058,827 (GRCm39) |
missense |
probably benign |
0.00 |
R4705:Lpar5
|
UTSW |
6 |
125,059,170 (GRCm39) |
missense |
possibly damaging |
0.64 |
R4787:Lpar5
|
UTSW |
6 |
125,059,461 (GRCm39) |
splice site |
probably null |
|
R5027:Lpar5
|
UTSW |
6 |
125,059,110 (GRCm39) |
missense |
possibly damaging |
0.69 |
R6114:Lpar5
|
UTSW |
6 |
125,058,639 (GRCm39) |
missense |
probably damaging |
1.00 |
R7197:Lpar5
|
UTSW |
6 |
125,059,347 (GRCm39) |
missense |
probably benign |
0.00 |
R7779:Lpar5
|
UTSW |
6 |
125,059,207 (GRCm39) |
missense |
probably damaging |
1.00 |
R8193:Lpar5
|
UTSW |
6 |
125,058,302 (GRCm39) |
missense |
probably benign |
|
R8264:Lpar5
|
UTSW |
6 |
125,058,465 (GRCm39) |
missense |
probably damaging |
1.00 |
R9460:Lpar5
|
UTSW |
6 |
125,058,234 (GRCm39) |
start gained |
probably benign |
|
R9628:Lpar5
|
UTSW |
6 |
125,058,948 (GRCm39) |
missense |
probably damaging |
0.96 |
V7580:Lpar5
|
UTSW |
6 |
125,058,690 (GRCm39) |
missense |
possibly damaging |
0.88 |
V7581:Lpar5
|
UTSW |
6 |
125,058,690 (GRCm39) |
missense |
possibly damaging |
0.88 |
V7582:Lpar5
|
UTSW |
6 |
125,058,690 (GRCm39) |
missense |
possibly damaging |
0.88 |
Z1176:Lpar5
|
UTSW |
6 |
125,059,035 (GRCm39) |
missense |
probably damaging |
1.00 |
Z1176:Lpar5
|
UTSW |
6 |
125,058,342 (GRCm39) |
missense |
possibly damaging |
0.92 |
Z1177:Lpar5
|
UTSW |
6 |
125,058,981 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2014-01-21 |