Incidental Mutation 'IGL01726:Pcgf1'
ID105306
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Pcgf1
Ensembl Gene ENSMUSG00000069678
Gene Namepolycomb group ring finger 1
SynonymsNspc1, 2010002K04Rik
Accession Numbers
Is this an essential gene? Essential (E-score: 1.000) question?
Stock #IGL01726
Quality Score
Status
Chromosome6
Chromosomal Location83077869-83080855 bp(+) (GRCm38)
Type of Mutationsplice site
DNA Base Change (assembly) T to A at 83078886 bp
ZygosityHeterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000135291 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000092614] [ENSMUST00000165164] [ENSMUST00000176027] [ENSMUST00000176089] [ENSMUST00000176100] [ENSMUST00000177177]
Predicted Effect probably null
Transcript: ENSMUST00000092614
SMART Domains Protein: ENSMUSP00000090277
Gene: ENSMUSG00000069678

DomainStartEndE-ValueType
RING 35 73 6.58e-5 SMART
PDB:4HPM|D 155 243 9e-45 PDB
Predicted Effect probably null
Transcript: ENSMUST00000165164
SMART Domains Protein: ENSMUSP00000130614
Gene: ENSMUSG00000069678

DomainStartEndE-ValueType
RING 47 85 6.58e-5 SMART
Pfam:RAWUL 174 253 9.7e-19 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000176027
SMART Domains Protein: ENSMUSP00000135664
Gene: ENSMUSG00000069678

DomainStartEndE-ValueType
PDB:2CKL|A 1 46 2e-13 PDB
PDB:4HPM|D 84 106 1e-5 PDB
Predicted Effect probably null
Transcript: ENSMUST00000176089
SMART Domains Protein: ENSMUSP00000135268
Gene: ENSMUSG00000069678

DomainStartEndE-ValueType
PDB:2CKL|A 1 32 5e-9 PDB
PDB:4HPM|D 33 104 3e-27 PDB
Predicted Effect probably null
Transcript: ENSMUST00000176100
SMART Domains Protein: ENSMUSP00000135882
Gene: ENSMUSG00000069678

DomainStartEndE-ValueType
PDB:2CKL|A 19 52 3e-9 PDB
Predicted Effect noncoding transcript
Transcript: ENSMUST00000176372
Predicted Effect probably null
Transcript: ENSMUST00000177177
SMART Domains Protein: ENSMUSP00000135291
Gene: ENSMUSG00000069678

DomainStartEndE-ValueType
PDB:2CKL|A 1 46 2e-12 PDB
PDB:4HPM|D 84 172 7e-46 PDB
Predicted Effect noncoding transcript
Transcript: ENSMUST00000193381
Predicted Effect noncoding transcript
Transcript: ENSMUST00000204211
Coding Region Coverage
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] PCGF1 is a mammalian homolog of the Drosophila polycomb group genes, which act as transcriptional repressors to regulate anterior-posterior patterning in early embryonic development (Nunes et al., 2001 [PubMed 11287196]). See also PCGF2 (MIM 600346).[supplied by OMIM, Aug 2008]
Allele List at MGI
Other mutations in this stock
Total: 52 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adar T C 3: 89,730,840 probably null Het
Arpc2 A G 1: 74,248,179 T53A probably benign Het
Ccdc170 C A 10: 4,549,713 L545M probably benign Het
Ccm2l T C 2: 153,080,901 probably benign Het
Celsr1 T C 15: 85,926,190 N2166D probably benign Het
Clca4b T G 3: 144,928,342 D104A probably damaging Het
Clcnka C T 4: 141,392,740 probably null Het
Clip2 A T 5: 134,522,664 N201K probably damaging Het
Cyp1a2 G A 9: 57,682,202 L110F possibly damaging Het
Dhtkd1 T C 2: 5,942,656 T6A unknown Het
Enthd1 A C 15: 80,452,451 L594R probably damaging Het
Espnl A G 1: 91,344,904 D618G probably benign Het
Gm6096 A T 7: 34,251,479 I148F probably damaging Het
Hsf5 C T 11: 87,636,125 T541I probably benign Het
Il18r1 A G 1: 40,498,403 S443G possibly damaging Het
Il1a T C 2: 129,304,720 D151G possibly damaging Het
Ints1 A G 5: 139,768,411 probably benign Het
Kcnh1 A C 1: 192,505,856 D875A possibly damaging Het
Naip6 T A 13: 100,303,252 I336F probably benign Het
Napepld A G 5: 21,675,659 F246S possibly damaging Het
Nova1 C T 12: 46,713,497 probably null Het
Nsa2 C A 13: 97,132,017 A181S probably damaging Het
Ntn5 C A 7: 45,694,247 R337S probably damaging Het
Nynrin T C 14: 55,864,154 S427P probably benign Het
Olfr678 A G 7: 105,069,629 E54G probably damaging Het
Pfn4 T A 12: 4,774,446 L58I probably benign Het
Plekha1 C A 7: 130,897,329 P116Q probably damaging Het
Pou5f2 T C 13: 78,025,181 S81P possibly damaging Het
Prag1 A G 8: 36,102,992 D243G probably damaging Het
Rbm26 G A 14: 105,152,507 P227L probably damaging Het
Rgl1 A T 1: 152,519,153 N756K probably damaging Het
Rhou A T 8: 123,654,141 T66S possibly damaging Het
Rspo3 A T 10: 29,504,708 D103E probably benign Het
Rundc3b T C 5: 8,520,902 K306E probably benign Het
Slc25a32 A G 15: 39,102,071 probably benign Het
St6galnac2 C T 11: 116,685,119 D169N probably damaging Het
Tarsl2 A G 7: 65,682,818 T556A possibly damaging Het
Tmem266 A G 9: 55,435,202 K324E probably benign Het
Tnrc6c T C 11: 117,749,335 probably benign Het
Trappc9 A T 15: 72,946,122 S452T probably damaging Het
Tspear T A 10: 77,881,287 probably benign Het
Ttll5 T G 12: 85,918,934 I571S probably benign Het
Ttn T C 2: 76,967,089 T544A probably benign Het
Ubn1 T C 16: 5,073,470 probably null Het
Ubr2 C A 17: 46,992,981 probably benign Het
Usp21 A T 1: 171,284,001 W360R probably damaging Het
Vmn2r62 A T 7: 42,765,102 L639H probably damaging Het
Zc3h7b T A 15: 81,771,799 I116N possibly damaging Het
Zfp618 C T 4: 63,132,635 T551I probably damaging Het
Zfp804b T C 5: 7,180,707 probably benign Het
Zkscan8 T C 13: 21,520,803 H322R probably benign Het
Zwint T G 10: 72,657,187 probably null Het
Other mutations in Pcgf1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00911:Pcgf1 APN 6 83080625 missense probably damaging 1.00
IGL01432:Pcgf1 APN 6 83078417 missense possibly damaging 0.86
IGL03394:Pcgf1 APN 6 83079140 missense probably damaging 1.00
R0513:Pcgf1 UTSW 6 83080574 missense probably damaging 0.99
R0764:Pcgf1 UTSW 6 83079169 missense probably damaging 1.00
R1486:Pcgf1 UTSW 6 83079126 missense probably damaging 1.00
R4282:Pcgf1 UTSW 6 83079733 missense probably damaging 1.00
R4283:Pcgf1 UTSW 6 83079733 missense probably damaging 1.00
R4324:Pcgf1 UTSW 6 83079957 critical splice donor site probably null
R4732:Pcgf1 UTSW 6 83079957 critical splice donor site probably benign
R4733:Pcgf1 UTSW 6 83079957 critical splice donor site probably benign
R5569:Pcgf1 UTSW 6 83079705 nonsense probably null
Posted On2014-01-21