Incidental Mutation 'IGL00714:Fxr1'
| ID |
10850 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Fxr1
|
| Ensembl Gene |
ENSMUSG00000027680 |
| Gene Name |
FMR1 autosomal homolog 1 |
| Synonyms |
1110050J02Rik, 9530073J07Rik, Fxr1p, Fxr1h |
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
IGL00714
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
3 |
| Chromosomal Location |
34074133-34124129 bp(+) (GRCm39) |
| Type of Mutation |
splice site |
| DNA Base Change (assembly) |
T to C
at 34101776 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000143392
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000001620]
[ENSMUST00000167354]
[ENSMUST00000197694]
[ENSMUST00000198051]
[ENSMUST00000200086]
[ENSMUST00000200392]
|
| AlphaFold |
Q61584 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000001620
|
| SMART Domains |
Protein: ENSMUSP00000001620
Gene: ENSMUSG00000027680
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Agenet
|
2 |
55 |
4.4e-7 |
PFAM |
|
Pfam:Agenet
|
62 |
120 |
7.1e-10 |
PFAM |
|
KH
|
217 |
284 |
3.57e-4 |
SMART |
|
KH
|
286 |
356 |
1.22e-2 |
SMART |
|
low complexity region
|
404 |
421 |
N/A |
INTRINSIC |
|
Pfam:FXR_C1
|
489 |
564 |
1.9e-41 |
PFAM |
|
low complexity region
|
572 |
582 |
N/A |
INTRINSIC |
|
Pfam:FXR_C3
|
610 |
676 |
1.3e-29 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000167354
|
| SMART Domains |
Protein: ENSMUSP00000130216
Gene: ENSMUSG00000027680
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Agenet
|
59 |
120 |
3.3e-14 |
PFAM |
|
KH
|
217 |
284 |
3.57e-4 |
SMART |
|
KH
|
286 |
356 |
1.22e-2 |
SMART |
|
Pfam:FXR1P_C
|
361 |
380 |
4.2e-9 |
PFAM |
|
Pfam:FXR1P_C
|
379 |
486 |
1.5e-41 |
PFAM |
|
low complexity region
|
502 |
510 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000197694
|
| SMART Domains |
Protein: ENSMUSP00000142441
Gene: ENSMUSG00000027680
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Agenet
|
59 |
120 |
3.9e-14 |
PFAM |
|
KH
|
217 |
284 |
3.57e-4 |
SMART |
|
KH
|
286 |
356 |
1.22e-2 |
SMART |
|
Pfam:FXR1P_C
|
361 |
380 |
5e-9 |
PFAM |
|
Pfam:FXR1P_C
|
379 |
486 |
1.8e-41 |
PFAM |
|
low complexity region
|
502 |
510 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000197853
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000198051
|
| SMART Domains |
Protein: ENSMUSP00000142847
Gene: ENSMUSG00000027680
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Agenet
|
59 |
120 |
1.2e-11 |
PFAM |
|
KH
|
217 |
284 |
2.2e-6 |
SMART |
|
KH
|
286 |
356 |
7.5e-5 |
SMART |
|
Pfam:FXR1P_C
|
361 |
515 |
1.6e-64 |
PFAM |
|
low complexity region
|
531 |
539 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000200086
|
| SMART Domains |
Protein: ENSMUSP00000143562
Gene: ENSMUSG00000027680
| Domain | Start | End | E-Value | Type |
|---|
|
PDB:3O8V|A
|
2 |
40 |
1e-17 |
PDB |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000200392
|
| SMART Domains |
Protein: ENSMUSP00000143392
Gene: ENSMUSG00000027680
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:Agenet
|
59 |
120 |
3.3e-14 |
PFAM |
|
KH
|
217 |
284 |
3.57e-4 |
SMART |
|
KH
|
286 |
356 |
1.22e-2 |
SMART |
|
Pfam:FXR1P_C
|
361 |
380 |
4.2e-9 |
PFAM |
|
Pfam:FXR1P_C
|
379 |
486 |
1.5e-41 |
PFAM |
|
low complexity region
|
502 |
510 |
N/A |
INTRINSIC |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000200425
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an RNA binding protein that interacts with the functionally-similar proteins FMR1 and FXR2. These proteins shuttle between the nucleus and cytoplasm and associate with polyribosomes, predominantly with the 60S ribosomal subunit. Three transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mice display neonatal lethality with impaired muscle development. Mice homozygous for a hypomorphic allele display a reduced life span with impaired muscle development, growth retardation, and reduced grip strength. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 10 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 2900092C05Rik |
A |
C |
7: 12,289,931 (GRCm39) |
|
probably benign |
Het |
| Casp8ap2 |
A |
G |
4: 32,649,192 (GRCm39) |
Q1951R |
probably damaging |
Het |
| Cd22 |
T |
C |
7: 30,575,572 (GRCm39) |
M157V |
probably benign |
Het |
| Csta1 |
A |
G |
16: 35,945,369 (GRCm39) |
V48A |
probably damaging |
Het |
| Pcdh1 |
G |
A |
18: 38,331,782 (GRCm39) |
T407I |
possibly damaging |
Het |
| Pcdha1 |
A |
T |
18: 37,065,228 (GRCm39) |
T631S |
probably damaging |
Het |
| Sec23b |
C |
T |
2: 144,401,145 (GRCm39) |
A2V |
probably benign |
Het |
| Tbc1d2 |
A |
G |
4: 46,649,745 (GRCm39) |
V97A |
probably benign |
Het |
| Ttll9 |
A |
C |
2: 152,826,180 (GRCm39) |
E130A |
probably damaging |
Het |
| Zfp160 |
A |
T |
17: 21,246,964 (GRCm39) |
T505S |
probably benign |
Het |
|
| Other mutations in Fxr1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01598:Fxr1
|
APN |
3 |
34,118,381 (GRCm39) |
missense |
possibly damaging |
0.61 |
|
Outer_limits
|
UTSW |
3 |
34,093,692 (GRCm39) |
missense |
probably benign |
0.30 |
|
pueblo
|
UTSW |
3 |
34,118,381 (GRCm39) |
missense |
possibly damaging |
0.61 |
|
R4877_Fxr1_968
|
UTSW |
3 |
34,101,847 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1294:Fxr1
|
UTSW |
3 |
34,101,201 (GRCm39) |
missense |
probably benign |
0.00 |
|
R2134:Fxr1
|
UTSW |
3 |
34,112,196 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2405:Fxr1
|
UTSW |
3 |
34,116,003 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3023:Fxr1
|
UTSW |
3 |
34,118,373 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3055:Fxr1
|
UTSW |
3 |
34,103,333 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3056:Fxr1
|
UTSW |
3 |
34,103,333 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4009:Fxr1
|
UTSW |
3 |
34,119,171 (GRCm39) |
missense |
probably benign |
0.31 |
|
R4010:Fxr1
|
UTSW |
3 |
34,119,171 (GRCm39) |
missense |
probably benign |
0.31 |
|
R4706:Fxr1
|
UTSW |
3 |
34,118,278 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4721:Fxr1
|
UTSW |
3 |
34,118,381 (GRCm39) |
missense |
possibly damaging |
0.61 |
|
R4877:Fxr1
|
UTSW |
3 |
34,101,847 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5583:Fxr1
|
UTSW |
3 |
34,123,125 (GRCm39) |
missense |
probably benign |
0.18 |
|
R6280:Fxr1
|
UTSW |
3 |
34,100,401 (GRCm39) |
intron |
probably benign |
|
|
R6801:Fxr1
|
UTSW |
3 |
34,108,452 (GRCm39) |
missense |
possibly damaging |
0.65 |
|
R7203:Fxr1
|
UTSW |
3 |
34,100,689 (GRCm39) |
missense |
possibly damaging |
0.76 |
|
R7422:Fxr1
|
UTSW |
3 |
34,103,369 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7523:Fxr1
|
UTSW |
3 |
34,093,692 (GRCm39) |
missense |
probably benign |
0.30 |
|
R7785:Fxr1
|
UTSW |
3 |
34,100,403 (GRCm39) |
missense |
|
|
|
R8195:Fxr1
|
UTSW |
3 |
34,101,878 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8250:Fxr1
|
UTSW |
3 |
34,101,178 (GRCm39) |
nonsense |
probably null |
|
|
R8809:Fxr1
|
UTSW |
3 |
34,108,430 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R8839:Fxr1
|
UTSW |
3 |
34,100,831 (GRCm39) |
intron |
probably benign |
|
|
R9385:Fxr1
|
UTSW |
3 |
34,074,120 (GRCm39) |
unclassified |
probably benign |
|
|
R9613:Fxr1
|
UTSW |
3 |
34,100,352 (GRCm39) |
missense |
probably benign |
0.01 |
|
X0067:Fxr1
|
UTSW |
3 |
34,100,193 (GRCm39) |
missense |
possibly damaging |
0.76 |
|
| Posted On |
2012-12-06 |
Incidental Mutation