Incidental Mutation 'IGL00813:Lysmd3'
ID |
12716 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Lysmd3
|
Ensembl Gene |
ENSMUSG00000035840 |
Gene Name |
LysM, putative peptidoglycan-binding, domain containing 3 |
Synonyms |
1110030H10Rik |
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.106)
|
Stock # |
IGL00813
|
Quality Score |
|
Status
|
|
Chromosome |
13 |
Chromosomal Location |
81805782-81820990 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
C to A
at 81813361 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Asparagine to Lysine
at position 76
(N76K)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000038275
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000049055]
[ENSMUST00000224300]
[ENSMUST00000224592]
|
AlphaFold |
Q99LE3 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000049055
AA Change: N76K
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000038275 Gene: ENSMUSG00000035840 AA Change: N76K
Domain | Start | End | E-Value | Type |
LysM
|
66 |
110 |
4.6e-4 |
SMART |
low complexity region
|
149 |
158 |
N/A |
INTRINSIC |
transmembrane domain
|
214 |
236 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000224300
AA Change: N76K
PolyPhen 2
Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
|
Predicted Effect |
unknown
Transcript: ENSMUST00000224420
AA Change: N16K
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000224592
|
Coding Region Coverage |
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 25 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Abca12 |
C |
A |
1: 71,392,921 (GRCm39) |
|
probably null |
Het |
Aco1 |
T |
C |
4: 40,180,290 (GRCm39) |
|
probably null |
Het |
Bloc1s5 |
T |
C |
13: 38,803,158 (GRCm39) |
N76S |
probably damaging |
Het |
Cyp3a44 |
A |
T |
5: 145,711,157 (GRCm39) |
*505R |
probably null |
Het |
Epor |
T |
C |
9: 21,871,887 (GRCm39) |
T253A |
possibly damaging |
Het |
Faim |
G |
A |
9: 98,874,218 (GRCm39) |
G15R |
probably damaging |
Het |
Hecw1 |
T |
A |
13: 14,452,961 (GRCm39) |
|
probably null |
Het |
Hhla1 |
A |
T |
15: 65,813,810 (GRCm39) |
V209E |
probably damaging |
Het |
Ino80d |
G |
A |
1: 63,132,462 (GRCm39) |
P67L |
probably damaging |
Het |
Lrrc37 |
A |
C |
11: 103,505,324 (GRCm39) |
F2215V |
probably benign |
Het |
Map10 |
G |
A |
8: 126,398,671 (GRCm39) |
R688Q |
probably benign |
Het |
Mars1 |
A |
T |
10: 127,135,916 (GRCm39) |
M554K |
probably damaging |
Het |
Mgat5 |
G |
A |
1: 127,312,543 (GRCm39) |
M227I |
probably benign |
Het |
Nup210l |
A |
G |
3: 90,039,725 (GRCm39) |
I389V |
probably benign |
Het |
Ppp1r16b |
A |
G |
2: 158,598,885 (GRCm39) |
K315R |
probably damaging |
Het |
Rae1 |
A |
G |
2: 172,848,726 (GRCm39) |
D114G |
probably damaging |
Het |
Rbms1 |
T |
C |
2: 60,628,049 (GRCm39) |
K64E |
probably damaging |
Het |
Shox2 |
C |
A |
3: 66,882,777 (GRCm39) |
Q105H |
probably damaging |
Het |
Simc1 |
C |
A |
13: 54,694,799 (GRCm39) |
F293L |
probably damaging |
Het |
Slc11a1 |
A |
G |
1: 74,422,639 (GRCm39) |
I289V |
probably benign |
Het |
Slit2 |
G |
A |
5: 48,146,493 (GRCm39) |
E95K |
possibly damaging |
Het |
Stk32a |
T |
A |
18: 43,443,585 (GRCm39) |
V254E |
probably benign |
Het |
Them5 |
A |
G |
3: 94,250,595 (GRCm39) |
K53E |
probably damaging |
Het |
Tmem67 |
T |
C |
4: 12,058,587 (GRCm39) |
|
probably benign |
Het |
Wdr7 |
T |
A |
18: 63,868,675 (GRCm39) |
L248Q |
possibly damaging |
Het |
|
Other mutations in Lysmd3 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00326:Lysmd3
|
APN |
13 |
81,813,363 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL00327:Lysmd3
|
APN |
13 |
81,813,197 (GRCm39) |
missense |
probably benign |
0.00 |
R1509:Lysmd3
|
UTSW |
13 |
81,817,390 (GRCm39) |
missense |
probably benign |
0.11 |
R2158:Lysmd3
|
UTSW |
13 |
81,817,737 (GRCm39) |
missense |
probably damaging |
1.00 |
R4170:Lysmd3
|
UTSW |
13 |
81,817,529 (GRCm39) |
nonsense |
probably null |
|
R4720:Lysmd3
|
UTSW |
13 |
81,817,584 (GRCm39) |
missense |
possibly damaging |
0.81 |
R5120:Lysmd3
|
UTSW |
13 |
81,817,311 (GRCm39) |
missense |
probably damaging |
1.00 |
R5728:Lysmd3
|
UTSW |
13 |
81,817,380 (GRCm39) |
missense |
probably damaging |
1.00 |
R5979:Lysmd3
|
UTSW |
13 |
81,813,393 (GRCm39) |
splice site |
probably null |
|
R5990:Lysmd3
|
UTSW |
13 |
81,817,707 (GRCm39) |
missense |
probably damaging |
1.00 |
R8223:Lysmd3
|
UTSW |
13 |
81,817,386 (GRCm39) |
missense |
|
|
R9013:Lysmd3
|
UTSW |
13 |
81,817,580 (GRCm39) |
missense |
probably damaging |
1.00 |
|
Posted On |
2012-12-06 |