Incidental Mutation 'IGL00813:Lysmd3'
ID 12716
Institutional Source Australian Phenomics Network (link to record)
Gene Symbol Lysmd3
Ensembl Gene ENSMUSG00000035840
Gene Name LysM, putative peptidoglycan-binding, domain containing 3
Synonyms 1110030H10Rik
Accession Numbers
Essential gene? Probably non essential (E-score: 0.106) question?
Stock # IGL00813
Quality Score
Status
Chromosome 13
Chromosomal Location 81805782-81820990 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to A at 81813361 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Asparagine to Lysine at position 76 (N76K)
Ref Sequence ENSEMBL: ENSMUSP00000038275 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000049055] [ENSMUST00000224300] [ENSMUST00000224592]
AlphaFold Q99LE3
Predicted Effect probably damaging
Transcript: ENSMUST00000049055
AA Change: N76K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000038275
Gene: ENSMUSG00000035840
AA Change: N76K

DomainStartEndE-ValueType
LysM 66 110 4.6e-4 SMART
low complexity region 149 158 N/A INTRINSIC
transmembrane domain 214 236 N/A INTRINSIC
Predicted Effect probably damaging
Transcript: ENSMUST00000224300
AA Change: N76K

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
Predicted Effect unknown
Transcript: ENSMUST00000224420
AA Change: N16K
Predicted Effect probably benign
Transcript: ENSMUST00000224592
Coding Region Coverage
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 25 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca12 C A 1: 71,392,921 (GRCm39) probably null Het
Aco1 T C 4: 40,180,290 (GRCm39) probably null Het
Bloc1s5 T C 13: 38,803,158 (GRCm39) N76S probably damaging Het
Cyp3a44 A T 5: 145,711,157 (GRCm39) *505R probably null Het
Epor T C 9: 21,871,887 (GRCm39) T253A possibly damaging Het
Faim G A 9: 98,874,218 (GRCm39) G15R probably damaging Het
Hecw1 T A 13: 14,452,961 (GRCm39) probably null Het
Hhla1 A T 15: 65,813,810 (GRCm39) V209E probably damaging Het
Ino80d G A 1: 63,132,462 (GRCm39) P67L probably damaging Het
Lrrc37 A C 11: 103,505,324 (GRCm39) F2215V probably benign Het
Map10 G A 8: 126,398,671 (GRCm39) R688Q probably benign Het
Mars1 A T 10: 127,135,916 (GRCm39) M554K probably damaging Het
Mgat5 G A 1: 127,312,543 (GRCm39) M227I probably benign Het
Nup210l A G 3: 90,039,725 (GRCm39) I389V probably benign Het
Ppp1r16b A G 2: 158,598,885 (GRCm39) K315R probably damaging Het
Rae1 A G 2: 172,848,726 (GRCm39) D114G probably damaging Het
Rbms1 T C 2: 60,628,049 (GRCm39) K64E probably damaging Het
Shox2 C A 3: 66,882,777 (GRCm39) Q105H probably damaging Het
Simc1 C A 13: 54,694,799 (GRCm39) F293L probably damaging Het
Slc11a1 A G 1: 74,422,639 (GRCm39) I289V probably benign Het
Slit2 G A 5: 48,146,493 (GRCm39) E95K possibly damaging Het
Stk32a T A 18: 43,443,585 (GRCm39) V254E probably benign Het
Them5 A G 3: 94,250,595 (GRCm39) K53E probably damaging Het
Tmem67 T C 4: 12,058,587 (GRCm39) probably benign Het
Wdr7 T A 18: 63,868,675 (GRCm39) L248Q possibly damaging Het
Other mutations in Lysmd3
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00326:Lysmd3 APN 13 81,813,363 (GRCm39) missense probably damaging 1.00
IGL00327:Lysmd3 APN 13 81,813,197 (GRCm39) missense probably benign 0.00
R1509:Lysmd3 UTSW 13 81,817,390 (GRCm39) missense probably benign 0.11
R2158:Lysmd3 UTSW 13 81,817,737 (GRCm39) missense probably damaging 1.00
R4170:Lysmd3 UTSW 13 81,817,529 (GRCm39) nonsense probably null
R4720:Lysmd3 UTSW 13 81,817,584 (GRCm39) missense possibly damaging 0.81
R5120:Lysmd3 UTSW 13 81,817,311 (GRCm39) missense probably damaging 1.00
R5728:Lysmd3 UTSW 13 81,817,380 (GRCm39) missense probably damaging 1.00
R5979:Lysmd3 UTSW 13 81,813,393 (GRCm39) splice site probably null
R5990:Lysmd3 UTSW 13 81,817,707 (GRCm39) missense probably damaging 1.00
R8223:Lysmd3 UTSW 13 81,817,386 (GRCm39) missense
R9013:Lysmd3 UTSW 13 81,817,580 (GRCm39) missense probably damaging 1.00
Posted On 2012-12-06