Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL00088:Traip'

1279

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Traip

Ensembl Gene

ENSMUSG00000032586

Gene Name

TRAF-interacting protein

Synonyms

Trip

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

IGL00088

Quality Score

Status

Chromosome

Chromosomal Location

107828158-107849469 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 107847749 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Tryptophan at position 391 (R391W)

Ref Sequence

ENSEMBL: ENSMUSP00000040001 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000035216] [ENSMUST00000049348]

AlphaFold

Q8VIG6

Predicted Effect

probably benign
Transcript: ENSMUST00000035216

SMART Domains

Protein: ENSMUSP00000035216
Gene: ENSMUSG00000032596

Domain	Start	End	E-Value	Type
Pfam:ThiF	6	401	1.2e-33	PFAM
Pfam:E1_FCCH	178	249	1.1e-26	PFAM
Pfam:E1_4HB	250	318	2.5e-22	PFAM
internal_repeat_1	402	510	8.05e-5	PROSPERO
Pfam:UBA_e1_thiolCys	592	808	1.3e-50	PFAM
UBA_e1_C	846	973	4.63e-65	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000049348
AA Change: R391W

PolyPhen 2 Score 0.154 (Sensitivity: 0.92; Specificity: 0.87)

SMART Domains

Protein: ENSMUSP00000040001
Gene: ENSMUSG00000032586
AA Change: R391W

Domain	Start	End	E-Value	Type
RING	7	49	6.68e-6	SMART
coiled coil region	70	278	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000176037

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000194191

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000194538

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000195803

Coding Region Coverage

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that contains an N-terminal RING finger motif and a putative coiled-coil domain. A similar murine protein interacts with TNFR-associated factor 1 (TRAF1), TNFR-associated factor 2 (TRAF2), and cylindromatosis. The interaction with TRAF2 inhibits TRAF2-mediated nuclear factor kappa-B, subunit 1 activation that is required for cell activation and protection against apoptosis. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a null allele exhibit embryonic lethality at prior to E8.5, embryonic growth retardation, decreased embryonic size, decreased cell proliferation and increased apoptosis. [provided by MGI curators]

Allele List at MGI

All alleles(10) : Targeted(1) Gene trapped(9)

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ankhd1	A	G	18: 36,798,512 (GRCm39)		probably benign	Het
Anpep	A	G	7: 79,475,484 (GRCm39)	V879A	possibly damaging	Het
Asb13	T	G	13: 3,693,476 (GRCm39)	V78G	probably null	Het
Atad2b	A	G	12: 5,074,593 (GRCm39)	R1051G	probably damaging	Het
Bdp1	T	C	13: 100,235,018 (GRCm39)	Y192C	probably damaging	Het
C1ql2	G	T	1: 120,269,399 (GRCm39)	G185C	probably damaging	Het
Catsperg2	A	G	7: 29,404,829 (GRCm39)	S745P	possibly damaging	Het
Col19a1	A	T	1: 24,600,387 (GRCm39)	S52T	unknown	Het
Col4a2	G	T	8: 11,493,685 (GRCm39)	G1418V	probably damaging	Het
Crnkl1	C	T	2: 145,760,388 (GRCm39)	D677N	possibly damaging	Het
Cyp2j8	T	A	4: 96,392,079 (GRCm39)	N125I	probably benign	Het
Cyp2t4	A	T	7: 26,854,723 (GRCm39)	M68L	probably benign	Het
Dclk2	T	A	3: 86,706,397 (GRCm39)		probably null	Het
Dmxl2	T	C	9: 54,308,988 (GRCm39)	D1921G	probably benign	Het
Dnah10	G	A	5: 124,905,667 (GRCm39)	G4104S	probably damaging	Het
Echdc2	T	C	4: 108,036,108 (GRCm39)	I273T	probably damaging	Het
Extl1	T	C	4: 134,085,330 (GRCm39)	K596E	probably damaging	Het
Fads3	A	T	19: 10,029,663 (GRCm39)	D108V	probably null	Het
Fam135b	A	G	15: 71,322,343 (GRCm39)	L1274P	probably damaging	Het
Fat1	T	A	8: 45,477,639 (GRCm39)	H2228Q	possibly damaging	Het
Gcc2	C	T	10: 58,128,502 (GRCm39)	H1341Y	probably damaging	Het
Gls2	A	G	10: 128,036,840 (GRCm39)		probably null	Het
Gpr137	A	C	19: 6,917,072 (GRCm39)	V139G	probably damaging	Het
Ikbke	A	G	1: 131,197,749 (GRCm39)		probably null	Het
Irak2	A	T	6: 113,655,636 (GRCm39)	N285Y	probably benign	Het
Kcnu1	G	A	8: 26,387,884 (GRCm39)	C566Y	probably benign	Het
Klhl29	G	A	12: 5,190,705 (GRCm39)	P97S	probably benign	Het
Lama4	T	C	10: 38,941,591 (GRCm39)		probably benign	Het
Lhx6	G	A	2: 35,981,728 (GRCm39)		probably benign	Het
Mdn1	T	C	4: 32,723,651 (GRCm39)	L2529P	probably damaging	Het
Muc4	G	A	16: 32,754,086 (GRCm38)	G1321R	probably benign	Het
Naa15	T	A	3: 51,345,826 (GRCm39)	V19D	probably damaging	Het
Ncbp3	A	T	11: 72,964,355 (GRCm39)		probably benign	Het
Nckipsd	G	A	9: 108,692,168 (GRCm39)	V530I	probably benign	Het
Neb	A	G	2: 52,198,759 (GRCm39)	I394T	possibly damaging	Het
Nnmt	A	T	9: 48,503,224 (GRCm39)		probably benign	Het
Nup58	T	A	14: 60,480,026 (GRCm39)	I207L	probably benign	Het
Or14j2	A	T	17: 37,885,808 (GRCm39)	C169S	probably damaging	Het
Or5ae1	T	A	7: 84,565,578 (GRCm39)	M197K	probably damaging	Het
Or5k16	C	T	16: 58,736,213 (GRCm39)	E264K	probably benign	Het
Otud4	T	A	8: 80,399,510 (GRCm39)	N741K	probably damaging	Het
Pard6a	T	A	8: 106,429,833 (GRCm39)	C264S	probably benign	Het
Plch2	T	C	4: 155,091,099 (GRCm39)	N276S	probably damaging	Het
Pramel31	T	A	4: 144,089,100 (GRCm39)	H139Q	possibly damaging	Het
Pramel32	T	A	4: 88,547,307 (GRCm39)	K121N	probably benign	Het
Racgap1	T	C	15: 99,534,003 (GRCm39)		probably benign	Het
Rad51d	T	C	11: 82,780,572 (GRCm39)	D70G	probably damaging	Het
Recql4	C	T	15: 76,591,536 (GRCm39)	A484T	possibly damaging	Het
Reg3g	A	T	6: 78,443,762 (GRCm39)	S149T	probably benign	Het
Rpl13a	C	A	7: 44,776,495 (GRCm39)		probably null	Het
Scn10a	T	C	9: 119,501,292 (GRCm39)	Y164C	probably damaging	Het
Scn2a	A	G	2: 65,594,784 (GRCm39)	I1878V	probably benign	Het
Sgcg	T	A	14: 61,477,796 (GRCm39)	R98*	probably null	Het
Speer4c2	C	A	5: 15,861,884 (GRCm39)		probably benign	Het
Tas2r140	A	T	6: 40,468,274 (GRCm39)	I35F	probably benign	Het
Tex19.2	A	G	11: 121,007,638 (GRCm39)	F270S	possibly damaging	Het
Trim7	A	G	11: 48,736,398 (GRCm39)	N251D	probably damaging	Het
Trmt2a	T	A	16: 18,067,351 (GRCm39)	V8D	probably benign	Het
Tut7	T	C	13: 59,964,512 (GRCm39)	E221G	probably damaging	Het
Ubr3	A	C	2: 69,819,154 (GRCm39)	I9L	probably benign	Het
Usp42	A	G	5: 143,702,897 (GRCm39)	S575P	probably benign	Het
Vmn2r52	G	T	7: 9,903,023 (GRCm39)	H468Q	probably benign	Het
Vmn2r59	T	A	7: 41,661,488 (GRCm39)	T776S	possibly damaging	Het

Other mutations in Traip

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01457:Traip	APN	9	107,847,671 (GRCm39)	missense	probably benign	0.00
IGL01597:Traip	APN	9	107,833,123 (GRCm39)	critical splice donor site	probably null
IGL02197:Traip	APN	9	107,845,936 (GRCm39)	missense	possibly damaging	0.89
IGL03077:Traip	APN	9	107,840,125 (GRCm39)	unclassified	probably benign
IGL03226:Traip	APN	9	107,848,192 (GRCm39)	missense	probably damaging	0.97
BB008:Traip	UTSW	9	107,848,241 (GRCm39)	missense	probably benign	0.04
BB018:Traip	UTSW	9	107,848,241 (GRCm39)	missense	probably benign	0.04
P0016:Traip	UTSW	9	107,845,855 (GRCm39)	missense	possibly damaging	0.93
R1693:Traip	UTSW	9	107,847,229 (GRCm39)	missense	probably damaging	0.99
R2054:Traip	UTSW	9	107,840,118 (GRCm39)	missense	probably benign	0.08
R4396:Traip	UTSW	9	107,836,686 (GRCm39)	missense	probably benign	0.02
R4617:Traip	UTSW	9	107,847,218 (GRCm39)	missense	probably benign	0.00
R6151:Traip	UTSW	9	107,847,818 (GRCm39)	critical splice donor site	probably null
R6241:Traip	UTSW	9	107,845,933 (GRCm39)	missense	probably benign	0.33
R6920:Traip	UTSW	9	107,838,240 (GRCm39)	nonsense	probably null
R7177:Traip	UTSW	9	107,838,184 (GRCm39)	missense	possibly damaging	0.62
R7191:Traip	UTSW	9	107,847,216 (GRCm39)	missense	probably benign
R7504:Traip	UTSW	9	107,838,743 (GRCm39)	missense	probably benign	0.05
R7931:Traip	UTSW	9	107,848,241 (GRCm39)	missense	probably benign	0.04
R7939:Traip	UTSW	9	107,833,077 (GRCm39)	missense	probably benign	0.21
R8228:Traip	UTSW	9	107,838,265 (GRCm39)	missense	probably benign	0.16
R9059:Traip	UTSW	9	107,840,549 (GRCm39)	missense	probably benign	0.01
R9511:Traip	UTSW	9	107,838,785 (GRCm39)	missense	probably damaging	1.00
R9548:Traip	UTSW	9	107,833,099 (GRCm39)	missense	probably damaging	1.00
X0018:Traip	UTSW	9	107,838,855 (GRCm39)	critical splice donor site	probably null

Posted On

2011-07-12