Incidental Mutation 'IGL00162:Senp6'
ID |
1291 |
Institutional Source |
Australian Phenomics Network
(link to record)
|
Gene Symbol |
Senp6
|
Ensembl Gene |
ENSMUSG00000034252 |
Gene Name |
SUMO/sentrin specific peptidase 6 |
Synonyms |
2810017C20Rik, E130319N12Rik |
Accession Numbers |
|
Essential gene? |
Essential
(E-score: 1.000)
|
Stock # |
IGL00162
|
Quality Score |
|
Status
|
|
Chromosome |
9 |
Chromosomal Location |
79974185-80052235 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 80023892 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Aspartic acid to Glycine
at position 385
(D385G)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000126777
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000037484]
[ENSMUST00000164859]
[ENSMUST00000165607]
[ENSMUST00000175999]
[ENSMUST00000176360]
[ENSMUST00000176640]
|
AlphaFold |
Q6P7W0 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000037484
AA Change: D378G
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000047220 Gene: ENSMUSG00000034252 AA Change: D378G
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
12 |
N/A |
INTRINSIC |
ZnF_C2HC
|
242 |
260 |
7.23e0 |
SMART |
Pfam:Peptidase_C48
|
700 |
826 |
3.5e-23 |
PFAM |
Pfam:Peptidase_C48
|
965 |
1096 |
1.1e-14 |
PFAM |
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000164859
AA Change: D212G
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000128918 Gene: ENSMUSG00000034252 AA Change: D212G
Domain | Start | End | E-Value | Type |
ZnF_C2HC
|
76 |
94 |
7.23e0 |
SMART |
Pfam:Peptidase_C48
|
534 |
660 |
5.2e-23 |
PFAM |
Pfam:Peptidase_C48
|
799 |
930 |
1.6e-14 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000165458
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000165607
AA Change: D385G
PolyPhen 2
Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
|
SMART Domains |
Protein: ENSMUSP00000126777 Gene: ENSMUSG00000034252 AA Change: D385G
Domain | Start | End | E-Value | Type |
low complexity region
|
2 |
12 |
N/A |
INTRINSIC |
ZnF_C2HC
|
249 |
267 |
7.23e0 |
SMART |
Pfam:Peptidase_C48
|
707 |
833 |
3.4e-23 |
PFAM |
Pfam:Peptidase_C48
|
972 |
1103 |
1.1e-14 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000175910
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000175999
|
Predicted Effect |
unknown
Transcript: ENSMUST00000176360
AA Change: D129G
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000176607
|
SMART Domains |
Protein: ENSMUSP00000135231 Gene: ENSMUSG00000034252
Domain | Start | End | E-Value | Type |
ZnF_C2HC
|
76 |
94 |
7.23e0 |
SMART |
Pfam:Peptidase_C48
|
534 |
660 |
4.9e-23 |
PFAM |
Pfam:Peptidase_C48
|
799 |
911 |
2.1e-14 |
PFAM |
|
Predicted Effect |
unknown
Transcript: ENSMUST00000176648
AA Change: D57G
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000176640
|
Coding Region Coverage |
|
Validation Efficiency |
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Ubiquitin-like molecules (UBLs), such as SUMO1 (UBL1; MIM 601912), are structurally related to ubiquitin (MIM 191339) and can be ligated to target proteins in a similar manner as ubiquitin. However, covalent attachment of UBLs does not result in degradation of the modified proteins. SUMO1 modification is implicated in the targeting of RANGAP1 (MIM 602362) to the nuclear pore complex, as well as in stabilization of I-kappa-B-alpha (NFKBIA; MIM 164008) from degradation by the 26S proteasome. Like ubiquitin, UBLs are synthesized as precursor proteins, with 1 or more amino acids following the C-terminal glycine-glycine residues of the mature UBL protein. Thus, the tail sequences of the UBL precursors need to be removed by UBL-specific proteases, such as SENP6, prior to their conjugation to target proteins (Kim et al., 2000 [PubMed 10799485]). SENPs also display isopeptidase activity for deconjugation of SUMO-conjugated substrates (Lima and Reverter, 2008 [PubMed 18799455]).[supplied by OMIM, Jun 2009] PHENOTYPE: Mice homozygous for a gene trap insertion exhibit prenatal lethality. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 36 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Cc2d1b |
T |
G |
4: 108,484,575 (GRCm39) |
L470R |
probably damaging |
Het |
Cd96 |
A |
T |
16: 45,892,162 (GRCm39) |
N275K |
possibly damaging |
Het |
Col22a1 |
A |
G |
15: 71,732,807 (GRCm39) |
|
probably null |
Het |
Cyb561 |
T |
C |
11: 105,826,662 (GRCm39) |
H197R |
probably damaging |
Het |
Dlgap1 |
T |
C |
17: 70,823,080 (GRCm39) |
S22P |
probably benign |
Het |
Dnajc6 |
A |
G |
4: 101,365,286 (GRCm39) |
|
probably benign |
Het |
Fgf6 |
A |
T |
6: 127,001,048 (GRCm39) |
K185N |
possibly damaging |
Het |
Fshr |
T |
C |
17: 89,293,619 (GRCm39) |
N353S |
probably damaging |
Het |
Gabbr1 |
T |
A |
17: 37,359,335 (GRCm39) |
Y103* |
probably null |
Het |
Gm7247 |
G |
A |
14: 51,760,962 (GRCm39) |
C177Y |
possibly damaging |
Het |
Hikeshi |
A |
G |
7: 89,584,989 (GRCm39) |
F72L |
probably damaging |
Het |
Ikzf4 |
T |
C |
10: 128,470,416 (GRCm39) |
E368G |
probably benign |
Het |
Kdm3b |
A |
G |
18: 34,942,462 (GRCm39) |
E851G |
probably benign |
Het |
Kif3b |
A |
G |
2: 153,159,051 (GRCm39) |
D284G |
probably damaging |
Het |
Kyat3 |
G |
A |
3: 142,440,235 (GRCm39) |
A320T |
probably benign |
Het |
Mok |
C |
T |
12: 110,774,631 (GRCm39) |
|
probably benign |
Het |
Mrgpra3 |
A |
G |
7: 47,239,267 (GRCm39) |
F220L |
probably benign |
Het |
Nr4a1 |
T |
C |
15: 101,168,780 (GRCm39) |
V272A |
probably damaging |
Het |
Or10ag58 |
A |
G |
2: 87,265,407 (GRCm39) |
H192R |
probably benign |
Het |
Or2ag19 |
A |
G |
7: 106,444,574 (GRCm39) |
Y252C |
possibly damaging |
Het |
Pikfyve |
T |
A |
1: 65,299,280 (GRCm39) |
|
probably null |
Het |
Plekhn1 |
T |
G |
4: 156,307,820 (GRCm39) |
T369P |
probably damaging |
Het |
Ptpn12 |
T |
C |
5: 21,234,848 (GRCm39) |
E45G |
probably damaging |
Het |
Ralgps1 |
A |
T |
2: 33,027,694 (GRCm39) |
*516R |
probably null |
Het |
Rps23rg1 |
A |
G |
8: 3,633,904 (GRCm39) |
T2A |
probably benign |
Het |
Siglech |
T |
C |
7: 55,422,339 (GRCm39) |
|
probably benign |
Het |
Slit1 |
A |
G |
19: 41,639,274 (GRCm39) |
L212P |
probably damaging |
Het |
Smchd1 |
T |
A |
17: 71,772,668 (GRCm39) |
|
probably benign |
Het |
Snapc4 |
A |
T |
2: 26,259,324 (GRCm39) |
C609S |
probably benign |
Het |
Strn3 |
T |
C |
12: 51,707,979 (GRCm39) |
T139A |
possibly damaging |
Het |
Tcaf3 |
T |
C |
6: 42,570,319 (GRCm39) |
T478A |
probably benign |
Het |
Tlr3 |
A |
G |
8: 45,853,727 (GRCm39) |
S198P |
probably damaging |
Het |
Ttn |
C |
T |
2: 76,720,823 (GRCm39) |
|
probably benign |
Het |
Vil1 |
G |
A |
1: 74,463,034 (GRCm39) |
E406K |
probably damaging |
Het |
Zfp462 |
A |
G |
4: 55,011,483 (GRCm39) |
|
probably null |
Het |
Zfyve9 |
A |
G |
4: 108,499,304 (GRCm39) |
V1338A |
possibly damaging |
Het |
|
Other mutations in Senp6 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00487:Senp6
|
APN |
9 |
80,021,120 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL01285:Senp6
|
APN |
9 |
80,044,000 (GRCm39) |
missense |
probably benign |
0.05 |
IGL01337:Senp6
|
APN |
9 |
80,043,792 (GRCm39) |
missense |
probably damaging |
0.97 |
IGL01563:Senp6
|
APN |
9 |
80,029,290 (GRCm39) |
missense |
probably benign |
|
IGL01633:Senp6
|
APN |
9 |
79,999,676 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02115:Senp6
|
APN |
9 |
80,029,208 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02208:Senp6
|
APN |
9 |
80,021,225 (GRCm39) |
missense |
probably damaging |
1.00 |
IGL02378:Senp6
|
APN |
9 |
80,033,674 (GRCm39) |
missense |
probably damaging |
1.00 |
A4554:Senp6
|
UTSW |
9 |
80,055,740 (GRCm39) |
unclassified |
probably benign |
|
R0031:Senp6
|
UTSW |
9 |
80,033,525 (GRCm39) |
missense |
probably damaging |
1.00 |
R0121:Senp6
|
UTSW |
9 |
80,023,952 (GRCm39) |
missense |
probably benign |
0.01 |
R0276:Senp6
|
UTSW |
9 |
80,044,029 (GRCm39) |
missense |
probably benign |
|
R0294:Senp6
|
UTSW |
9 |
80,021,007 (GRCm39) |
splice site |
probably null |
|
R0308:Senp6
|
UTSW |
9 |
80,040,265 (GRCm39) |
critical splice donor site |
probably null |
|
R0531:Senp6
|
UTSW |
9 |
80,031,166 (GRCm39) |
missense |
probably damaging |
0.99 |
R0743:Senp6
|
UTSW |
9 |
80,000,871 (GRCm39) |
missense |
probably damaging |
1.00 |
R0883:Senp6
|
UTSW |
9 |
80,023,841 (GRCm39) |
missense |
probably damaging |
1.00 |
R1071:Senp6
|
UTSW |
9 |
80,044,011 (GRCm39) |
missense |
probably benign |
0.35 |
R1171:Senp6
|
UTSW |
9 |
80,024,007 (GRCm39) |
missense |
possibly damaging |
0.89 |
R1340:Senp6
|
UTSW |
9 |
80,029,305 (GRCm39) |
missense |
possibly damaging |
0.47 |
R1571:Senp6
|
UTSW |
9 |
80,000,853 (GRCm39) |
missense |
probably damaging |
1.00 |
R1760:Senp6
|
UTSW |
9 |
80,025,911 (GRCm39) |
missense |
probably benign |
0.36 |
R1909:Senp6
|
UTSW |
9 |
80,021,056 (GRCm39) |
missense |
possibly damaging |
0.67 |
R2008:Senp6
|
UTSW |
9 |
80,033,680 (GRCm39) |
missense |
probably damaging |
1.00 |
R2067:Senp6
|
UTSW |
9 |
79,997,151 (GRCm39) |
missense |
probably benign |
0.11 |
R2077:Senp6
|
UTSW |
9 |
80,033,437 (GRCm39) |
missense |
probably benign |
0.14 |
R2141:Senp6
|
UTSW |
9 |
80,031,102 (GRCm39) |
missense |
probably damaging |
1.00 |
R2321:Senp6
|
UTSW |
9 |
80,031,022 (GRCm39) |
missense |
possibly damaging |
0.83 |
R2760:Senp6
|
UTSW |
9 |
80,029,260 (GRCm39) |
missense |
probably null |
|
R2939:Senp6
|
UTSW |
9 |
80,051,124 (GRCm39) |
missense |
probably benign |
0.00 |
R2940:Senp6
|
UTSW |
9 |
80,051,124 (GRCm39) |
missense |
probably benign |
0.00 |
R3081:Senp6
|
UTSW |
9 |
80,051,124 (GRCm39) |
missense |
probably benign |
0.00 |
R3784:Senp6
|
UTSW |
9 |
79,999,568 (GRCm39) |
missense |
probably benign |
0.16 |
R3785:Senp6
|
UTSW |
9 |
79,999,568 (GRCm39) |
missense |
probably benign |
0.16 |
R3800:Senp6
|
UTSW |
9 |
79,994,735 (GRCm39) |
missense |
possibly damaging |
0.89 |
R3857:Senp6
|
UTSW |
9 |
79,999,603 (GRCm39) |
missense |
possibly damaging |
0.85 |
R4790:Senp6
|
UTSW |
9 |
79,997,140 (GRCm39) |
missense |
probably benign |
0.20 |
R5117:Senp6
|
UTSW |
9 |
80,038,028 (GRCm39) |
missense |
probably damaging |
1.00 |
R5418:Senp6
|
UTSW |
9 |
80,029,151 (GRCm39) |
missense |
possibly damaging |
0.89 |
R5477:Senp6
|
UTSW |
9 |
80,051,125 (GRCm39) |
missense |
probably damaging |
1.00 |
R5582:Senp6
|
UTSW |
9 |
79,997,158 (GRCm39) |
missense |
possibly damaging |
0.91 |
R5717:Senp6
|
UTSW |
9 |
79,999,594 (GRCm39) |
missense |
probably damaging |
0.99 |
R5800:Senp6
|
UTSW |
9 |
80,033,715 (GRCm39) |
missense |
probably damaging |
1.00 |
R5802:Senp6
|
UTSW |
9 |
80,025,926 (GRCm39) |
unclassified |
probably benign |
|
R5899:Senp6
|
UTSW |
9 |
80,049,352 (GRCm39) |
splice site |
probably benign |
|
R5918:Senp6
|
UTSW |
9 |
80,021,398 (GRCm39) |
critical splice donor site |
probably null |
|
R5958:Senp6
|
UTSW |
9 |
80,049,576 (GRCm39) |
missense |
probably damaging |
1.00 |
R6360:Senp6
|
UTSW |
9 |
80,021,088 (GRCm39) |
missense |
probably benign |
|
R6477:Senp6
|
UTSW |
9 |
80,000,907 (GRCm39) |
nonsense |
probably null |
|
R6628:Senp6
|
UTSW |
9 |
80,040,236 (GRCm39) |
missense |
probably damaging |
1.00 |
R6703:Senp6
|
UTSW |
9 |
80,029,203 (GRCm39) |
missense |
probably damaging |
1.00 |
R7236:Senp6
|
UTSW |
9 |
80,040,247 (GRCm39) |
missense |
probably damaging |
1.00 |
R7268:Senp6
|
UTSW |
9 |
80,049,406 (GRCm39) |
missense |
probably damaging |
1.00 |
R7290:Senp6
|
UTSW |
9 |
80,043,797 (GRCm39) |
missense |
probably benign |
0.25 |
R7319:Senp6
|
UTSW |
9 |
80,033,481 (GRCm39) |
missense |
probably damaging |
1.00 |
R7422:Senp6
|
UTSW |
9 |
80,021,159 (GRCm39) |
missense |
probably damaging |
1.00 |
R7474:Senp6
|
UTSW |
9 |
80,049,610 (GRCm39) |
missense |
probably damaging |
1.00 |
R7480:Senp6
|
UTSW |
9 |
80,029,199 (GRCm39) |
missense |
probably damaging |
1.00 |
R7491:Senp6
|
UTSW |
9 |
80,031,010 (GRCm39) |
nonsense |
probably null |
|
R8428:Senp6
|
UTSW |
9 |
80,025,794 (GRCm39) |
missense |
probably damaging |
1.00 |
R8920:Senp6
|
UTSW |
9 |
79,999,561 (GRCm39) |
missense |
probably benign |
0.06 |
R9158:Senp6
|
UTSW |
9 |
79,994,732 (GRCm39) |
missense |
probably benign |
0.03 |
R9300:Senp6
|
UTSW |
9 |
80,049,433 (GRCm39) |
missense |
probably damaging |
1.00 |
R9347:Senp6
|
UTSW |
9 |
80,046,379 (GRCm39) |
missense |
possibly damaging |
0.89 |
R9387:Senp6
|
UTSW |
9 |
79,999,646 (GRCm39) |
missense |
probably damaging |
1.00 |
R9521:Senp6
|
UTSW |
9 |
79,974,687 (GRCm39) |
start gained |
probably benign |
|
R9652:Senp6
|
UTSW |
9 |
80,021,228 (GRCm39) |
missense |
probably damaging |
1.00 |
R9794:Senp6
|
UTSW |
9 |
79,999,590 (GRCm39) |
missense |
probably benign |
0.04 |
Z1176:Senp6
|
UTSW |
9 |
80,049,548 (GRCm39) |
missense |
probably benign |
0.02 |
Z1177:Senp6
|
UTSW |
9 |
80,010,975 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
Posted On |
2011-07-12 |